Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGCTCAGCA  >  NC_000913/3689950‑3690135
                                                                                             |                                                                                            
CCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCG                                                                                              <  SRR4302532.3268306/94‑1 (MQ=60)
CCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCA                                                                                              <  SRR4302532.4667078/94‑1 (MQ=60)
 CGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCAC                                                                                             >  SRR4302532.658439/1‑94 (MQ=60)
  GTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCC                                                                                            >  SRR4302532.1939967/1‑94 (MQ=60)
  GTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCC                                                                                            >  SRR4302532.1939966/1‑94 (MQ=60)
  GTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCC                                                                                            >  SRR4302532.3497033/1‑94 (MQ=60)
  GTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCC                                                                                            >  SRR4302532.2643873/1‑94 (MQ=60)
  GTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCC                                                                                            >  SRR4302532.4821736/1‑94 (MQ=60)
  GTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGGGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCC                                                                                            >  SRR4302532.4057834/1‑94 (MQ=60)
   TTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCA                                                                                           >  SRR4302532.3108648/1‑94 (MQ=60)
   TTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCA                                                                                           >  SRR4302532.2121287/1‑94 (MQ=60)
    TCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCAC                                                                                          <  SRR4302532.2556551/94‑1 (MQ=60)
     CGGGTTAATGCCACGTAGCGCCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACG                                                                                         <  SRR4302532.15005/94‑1 (MQ=60)
     CGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACG                                                                                         <  SRR4302532.4889525/94‑1 (MQ=60)
     CGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCATCACG                                                                                         <  SRR4302532.790136/94‑1 (MQ=60)
     CGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACG                                                                                         <  SRR4302532.2965753/94‑1 (MQ=60)
        GTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACT                                                                                      >  SRR4302532.3917816/1‑94 (MQ=60)
        GTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACT                                                                                      <  SRR4302532.6139261/94‑1 (MQ=60)
        GTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACT                                                                                      >  SRR4302532.3453488/1‑94 (MQ=60)
        GTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACT                                                                                      >  SRR4302532.4486771/1‑94 (MQ=60)
         TTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTG                                                                                     <  SRR4302532.3764939/94‑1 (MQ=60)
          TAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGG                                                                                    <  SRR4302532.477104/94‑1 (MQ=60)
            ATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCG                                                                                  >  SRR4302532.2044587/1‑94 (MQ=60)
            ATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCG                                                                                  >  SRR4302532.3061546/1‑94 (MQ=60)
             TGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGC                                                                                 >  SRR4302532.3395548/1‑94 (MQ=60)
             TGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGC                                                                                 >  SRR4302532.3710386/1‑94 (MQ=60)
              GCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCA                                                                                >  SRR4302532.1064831/1‑94 (MQ=60)
               CCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCAT                                                                               >  SRR4302532.5285933/1‑94 (MQ=60)
                CACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATC                                                                              <  SRR4302532.3832423/94‑1 (MQ=60)
                 ACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCA                                                                             <  SRR4302532.2353941/94‑1 (MQ=60)
                  CGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAG                                                                            >  SRR4302532.6189713/1‑94 (MQ=60)
                  CGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAG                                                                            <  SRR4302532.123256/94‑1 (MQ=60)
                   GTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGC                                                                           >  SRR4302532.3644142/1‑94 (MQ=60)
                   GTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGC                                                                           >  SRR4302532.1387366/1‑94 (MQ=60)
                   GTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGC                                                                           <  SRR4302532.5906565/94‑1 (MQ=60)
                    TAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCG                                                                          <  SRR4302532.4516305/94‑1 (MQ=60)
                    TAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCG                                                                          <  SRR4302532.781535/94‑1 (MQ=60)
                    TAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCG                                                                          <  SRR4302532.3830760/94‑1 (MQ=60)
                    TAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCG                                                                          >  SRR4302532.2575478/1‑94 (MQ=60)
                       CACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCC                                                                       >  SRR4302532.2017897/1‑94 (MQ=60)
                        CCCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCT                                                                      <  SRR4302532.88949/94‑1 (MQ=60)
                         CCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTG                                                                     <  SRR4302532.5602853/94‑1 (MQ=60)
                          CATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGC                                                                    <  SRR4302532.2840264/94‑1 (MQ=60)
                           ATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCA                                                                   >  SRR4302532.5513827/1‑94 (MQ=60)
                           ATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCA                                                                   >  SRR4302532.2525520/1‑94 (MQ=60)
                             GCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACG                                                                 <  SRR4302532.4083934/94‑1 (MQ=60)
                             GCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACG                                                                 >  SRR4302532.3951024/1‑94 (MQ=60)
                             GCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACG                                                                 <  SRR4302532.5314219/94‑1 (MQ=60)
                              CTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGC                                                                >  SRR4302532.1136468/1‑94 (MQ=60)
                              CTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGC                                                                >  SRR4302532.4471214/1‑94 (MQ=60)
                               TGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCC                                                               >  SRR4302532.3080628/1‑94 (MQ=60)
                                 CCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCG                                                             >  SRR4302532.5379520/1‑94 (MQ=60)
                                  CCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGG                                                            >  SRR4302532.5056276/1‑94 (MQ=60)
                                      CGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATC                                                        <  SRR4302532.3135819/94‑1 (MQ=60)
                                       GGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCCTCAGCGCCCTGCACGCCCGGCATCC                                                       >  SRR4302532.4894069/1‑94 (MQ=60)
                                       GGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCA                                                       <  SRR4302532.3991628/94‑1 (MQ=60)
                                         CGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACT                                                     >  SRR4302532.871402/1‑94 (MQ=60)
                                         CGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACT                                                     <  SRR4302532.3433525/94‑1 (MQ=60)
                                         CGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACT                                                     >  SRR4302532.3257941/1‑94 (MQ=60)
                                          GGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTT                                                    <  SRR4302532.100349/94‑1 (MQ=60)
                                          GGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCCCTT                                                    >  SRR4302532.1708809/1‑94 (MQ=60)
                                          GGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTT                                                    >  SRR4302532.2780578/1‑94 (MQ=60)
                                          GGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTT                                                    <  SRR4302532.1316768/94‑1 (MQ=60)
                                           GTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTG                                                   <  SRR4302532.314950/94‑1 (MQ=60)
                                           GTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTG                                                   >  SRR4302532.1439738/1‑94 (MQ=60)
                                           GTGCAATTTGCGCAAAGGTCAGCGTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTG                                                   <  SRR4302532.5024978/94‑1 (MQ=60)
                                            TGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGC                                                  >  SRR4302532.5541799/1‑94 (MQ=60)
                                            TGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGC                                                  >  SRR4302532.826083/1‑94 (MQ=60)
                                            TGCAATTTGCGCAAAGGTCAGATTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGC                                                  <  SRR4302532.292259/94‑1 (MQ=60)
                                             GCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCC                                                 >  SRR4302532.5656137/1‑94 (MQ=60)
                                             GCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCC                                                 >  SRR4302532.4850991/1‑94 (MQ=60)
                                                ATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCA                                              >  SRR4302532.1278609/1‑94 (MQ=60)
                                                  TTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACC                                            <  SRR4302532.5267393/94‑1 (MQ=60)
                                                     CGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGC                                         >  SRR4302532.1252437/1‑94 (MQ=60)
                                                      GCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCG                                        >  SRR4302532.2896218/1‑94 (MQ=60)
                                                       CAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGG                                       >  SRR4302532.4509497/1‑94 (MQ=60)
                                                       CAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGG                                       >  SRR4302532.1132224/1‑94 (MQ=60)
                                                        AAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGA                                      >  SRR4302532.5954766/1‑94 (MQ=60)
                                                            GTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTT                                  >  SRR4302532.2318756/1‑94 (MQ=60)
                                                              CAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGT                                >  SRR4302532.2484077/1‑94 (MQ=60)
                                                              CAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGT                                <  SRR4302532.3558037/94‑1 (MQ=60)
                                                              CAGCTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGT                                <  SRR4302532.2542753/94‑1 (MQ=60)
                                                                 CTTCACATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCC                             <  SRR4302532.2311584/94‑1 (MQ=60)
                                                                  TTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCG                            >  SRR4302532.2097679/1‑94 (MQ=60)
                                                                   TCAAATCACGCGAAGGAGCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTCCCCCACCTGCGGATTTTGTTCCGT                           <  SRR4302532.6013795/94‑1 (MQ=60)
                                                                     ACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCT                         <  SRR4302532.2746148/94‑1 (MQ=60)
                                                                      CATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTG                        >  SRR4302532.859222/1‑94 (MQ=60)
                                                                       ATCACGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCCCGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGG                       <  SRR4302532.187336/94‑1 (MQ=60)
                                                                           CGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGG                   <  SRR4302532.5084333/94‑1 (MQ=60)
                                                                           CGCGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGG                   >  SRR4302532.1320105/1‑94 (MQ=60)
                                                                             CGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGTGGCT                 >  SRR4302532.146079/1‑94 (MQ=60)
                                                                             CGAAGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCT                 >  SRR4302532.4496449/1‑94 (MQ=60)
                                                                              GAAGGACCGTTCTGAACCACGACTGGCGCATAAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGAGGATTTTGTTCCGTCTGGGCGGCTA                >  SRR4302532.4784550/1‑94 (MQ=60)
                                                                               AAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTAC               <  SRR4302532.1866484/94‑1 (MQ=60)
                                                                               AAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTAC               >  SRR4302532.5106507/1‑94 (MQ=60)
                                                                               AAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTAC               >  SRR4302532.834467/1‑94 (MQ=60)
                                                                                AGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACA              <  SRR4302532.2991071/94‑1 (MQ=60)
                                                                                AGGACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACA              <  SRR4302532.5328861/94‑1 (MQ=60)
                                                                                 GGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAG             <  SRR4302532.3976546/94‑1 (MQ=60)
                                                                                  GACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGC            <  SRR4302532.2708810/94‑1 (MQ=60)
                                                                                  GACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGC            <  SRR4302532.2723786/94‑1 (MQ=60)
                                                                                   ACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCT           <  SRR4302532.2827443/94‑1 (MQ=60)
                                                                                   ACCGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCT           <  SRR4302532.3173724/94‑1 (MQ=60)
                                                                                    CCGTTCTGCCCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTG          <  SRR4302532.1399573/94‑1 (MQ=60)
                                                                                     CGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGG         <  SRR4302532.3861911/94‑1 (MQ=60)
                                                                                     CGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGG         <  SRR4302532.4321700/94‑1 (MQ=60)
                                                                                     CGTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGG         >  SRR4302532.154205/1‑94 (MQ=60)
                                                                                      GTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGC        >  SRR4302532.4656418/1‑94 (MQ=60)
                                                                                      GTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGC        <  SRR4302532.5178136/94‑1 (MQ=60)
                                                                                      GTTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGC        >  SRR4302532.4603536/1‑94 (MQ=60)
                                                                                       TTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGCT       <  SRR4302532.5627740/94‑1 (MQ=60)
                                                                                       TTCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGCT       <  SRR4302532.1739516/94‑1 (MQ=60)
                                                                                        TCTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGCTC      >  SRR4302532.4314243/1‑94 (MQ=60)
                                                                                         CTGCACCCCGCCTGGCGCAACAGCGCCCTGCCCGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGCTCA     <  SRR4302532.1639468/94‑1 (MQ=60)
                                                                                         CTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGCTCA     <  SRR4302532.3970018/94‑1 (MQ=60)
                                                                                         CTGCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGCTCA     <  SRR4302532.3654514/94‑1 (MQ=60)
                                                                                          TGCACCACGACTGGCGCAGCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGCTCAG    <  SRR4302532.3078871/94‑1 (MQ=60)
                                                                                           GCACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGCTCAGC   <  SRR4302532.4462852/94‑1 (MQ=60)
                                                                                            CACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGCTCAGCA  >  SRR4302532.1556779/1‑94 (MQ=60)
                                                                                            CACCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGCTCAGCA  <  SRR4302532.3350939/94‑1 (MQ=60)
                                                                                             |                                                                                            
CCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGCGCAAAGGTCAGCTTCACATCACGCGAAGGACCGTTCTGCGCCACGACTGGCGCATCAGCGCCCTGCACGCCCGGCATCACTTGCCCCACCTGCGGATTTTGTTCCGTCTGGGCGGCTACAGCTGGCTCAGCA  >  NC_000913/3689950‑3690135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑