Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGAATAACCGATGACGAGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATT  >  NC_000913/3902570‑3902755
                                                                                             |                                                                                             
GGAATAACCGATGACGAGTAATTCAACAATGTGAACGGAATACCCA‑GGCAATCCAGCCCCAGCGCATCCGCTTTTTGACCGTTCTCGAAAGCGG                                                                                              >  SRR4302532.2862739/1‑94 (MQ=60)
 GAGTAACCGATGACGAGTAATTCAACAATGTGACCGGAATACCCAGGGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAG                                                                                              >  SRR4302532.4503760/1‑94 (MQ=60)
  AATAACCGATGACGAGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTC                                                                                            <  SRR4302532.2284584/94‑1 (MQ=60)
    TAACCGATGACGAGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAG                                                                                          >  SRR4302532.5011846/1‑94 (MQ=60)
       CCGATGACGAGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAAT                                                                                       >  SRR4302532.5757200/1‑94 (MQ=60)
       CCGATGACGAGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAAT                                                                                       >  SRR4302532.3504920/1‑94 (MQ=60)
       CCGATGACGAGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAAT                                                                                       >  SRR4302532.6029319/1‑94 (MQ=60)
        CGATGACGAGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATT                                                                                      >  SRR4302532.1157840/1‑94 (MQ=60)
        CGATGACGAGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATT                                                                                      >  SRR4302532.73117/1‑94 (MQ=60)
        CGATGACGAGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATT                                                                                      >  SRR4302532.73116/1‑94 (MQ=60)
         GATGACGAGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTA                                                                                     >  SRR4302532.4037369/1‑94 (MQ=60)
           TGACGAGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAAT                                                                                   <  SRR4302532.3489588/94‑1 (MQ=60)
           TGACGAGTAATTCAACAATGTCACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAAT                                                                                   <  SRR4302532.2751335/94‑1 (MQ=60)
             ACGAGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATAG                                                                                 >  SRR4302532.3556140/1‑94 (MQ=60)
               GAGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGAT                                                                               >  SRR4302532.3900540/1‑94 (MQ=60)
                AGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATG                                                                              >  SRR4302532.6086975/1‑94 (MQ=60)
                AGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATG                                                                              >  SRR4302532.6086974/1‑94 (MQ=60)
                AGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATG                                                                              <  SRR4302532.1222249/94‑1 (MQ=60)
                 GTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGC                                                                             >  SRR4302532.1829080/1‑94 (MQ=60)
                  TAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCA                                                                            >  SRR4302532.5149165/1‑94 (MQ=60)
                  GAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCA                                                                            <  SRR4302532.4857157/94‑1 (MQ=60)
                   AATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCAC                                                                           >  SRR4302532.5452341/1‑94 (MQ=60)
                    ATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACT                                                                          >  SRR4302532.5946371/1‑94 (MQ=60)
                      TCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAA                                                                        >  SRR4302532.2101788/1‑94 (MQ=60)
                       CAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAAC                                                                       >  SRR4302532.3782242/1‑94 (MQ=60)
                       CAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAAC                                                                       <  SRR4302532.4317483/94‑1 (MQ=60)
                        AACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACG                                                                      >  SRR4302532.5089191/1‑94 (MQ=60)
                        AACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACG                                                                      >  SRR4302532.6015921/1‑94 (MQ=60)
                         ACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGC                                                                     >  SRR4302532.5996454/1‑94 (MQ=60)
                          CAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCT                                                                    >  SRR4302532.3375304/1‑94 (MQ=60)
                          CAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCT                                                                    >  SRR4302532.5862086/1‑94 (MQ=60)
                            ATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCC                                                                  <  SRR4302532.229080/94‑1 (MQ=60)
                            ATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCC                                                                  >  SRR4302532.6231992/1‑94 (MQ=60)
                                  CCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAAT                                                            <  SRR4302532.5785852/94‑1 (MQ=60)
                                  CCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAAT                                                            <  SRR4302532.2704637/94‑1 (MQ=60)
                                  CCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAAT                                                            <  SRR4302532.2642554/94‑1 (MQ=60)
                                   CGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCCCCAATC                                                           >  SRR4302532.5380591/1‑94 (MQ=60)
                                    cgcatgCCCA‑GGAAAGCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCA                                                          <  SRR4302532.5614205/88‑1 (MQ=60)
                                        TACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCAT                                                      <  SRR4302532.1030868/94‑1 (MQ=60)
                                        TACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCAT                                                      >  SRR4302532.4233831/1‑94 (MQ=60)
                                         ACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATG                                                     <  SRR4302532.1718844/94‑1 (MQ=60)
                                          CCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGG                                                    >  SRR4302532.609151/1‑94 (MQ=60)
                                          CCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGG                                                    >  SRR4302532.5346942/1‑94 (MQ=60)
                                          CCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCAACGAATCACCATGG                                                    >  SRR4302532.5346941/1‑94 (MQ=60)
                                           CTA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGC                                                   <  SRR4302532.1175922/94‑1 (MQ=60)
                                             A‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAG                                                 <  SRR4302532.5753704/94‑1 (MQ=60)
                                             A‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAG                                                 >  SRR4302532.4305490/1‑94 (MQ=60)
                                               GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGT                                                >  SRR4302532.4314964/1‑94 (MQ=60)
                                               GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGT                                                >  SRR4302532.769141/1‑94 (MQ=60)
                                               AGAAAACCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGT                                                <  SRR4302532.2090207/94‑1 (MQ=60)
                                                  AATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAA                                             >  SRR4302532.4839398/1‑94 (MQ=60)
                                                   ATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAAT                                            >  SRR4302532.213917/1‑94 (MQ=60)
                                                     CCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGG                                          >  SRR4302532.2733024/1‑94 (MQ=60)
                                                     CCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGG                                          <  SRR4302532.4611515/94‑1 (MQ=60)
                                                     CCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGG                                          <  SRR4302532.5343117/94‑1 (MQ=60)
                                                      CAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGA                                         >  SRR4302532.4938861/1‑94 (MQ=60)
                                                       AGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCCCCAATCACCATGGCAGTAAATGGAT                                        <  SRR4302532.1558332/94‑1 (MQ=60)
                                                       AGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGAT                                        <  SRR4302532.3287801/94‑1 (MQ=60)
                                                        GCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATT                                       <  SRR4302532.905169/94‑1 (MQ=60)
                                                         CCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTA                                      >  SRR4302532.5978638/1‑94 (MQ=60)
                                                          CCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTAC                                     >  SRR4302532.5410903/1‑94 (MQ=60)
                                                           CCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACC                                    >  SRR4302532.92005/1‑94 (MQ=60)
                                                           CCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACC                                    <  SRR4302532.1548171/94‑1 (MQ=60)
                                                            CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCG                                   <  SRR4302532.1521012/94‑1 (MQ=60)
                                                            CAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCG                                   >  SRR4302532.5456504/1‑94 (MQ=60)
                                                              GCGCATCCGCTTTTTGCCCGTTCTGGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCC                                 <  SRR4302532.1965516/94‑1 (MQ=60)
                                                              GCGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCC                                 >  SRR4302532.3148556/1‑94 (MQ=60)
                                                               CGCATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCG                                >  SRR4302532.2089474/1‑94 (MQ=60)
                                                               CGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCG                                >  SRR4302532.3296412/1‑94 (MQ=60)
                                                                GCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGA                               >  SRR4302532.3471263/1‑94 (MQ=60)
                                                                  ATCCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAG                             <  SRR4302532.4245139/94‑1 (MQ=60)
                                                                  ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAG                             >  SRR4302532.572500/1‑94 (MQ=60)
                                                                  ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAG                             >  SRR4302532.2831594/1‑94 (MQ=60)
                                                                  ATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAG                             >  SRR4302532.950837/1‑94 (MQ=60)
                                                                    CCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCG                           <  SRR4302532.1605193/94‑1 (MQ=60)
                                                                    CCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCG                           <  SRR4302532.83260/94‑1 (MQ=60)
                                                                    CCGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCG                           <  SRR4302532.3639902/94‑1 (MQ=60)
                                                                    CCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCG                           <  SRR4302532.1232933/94‑1 (MQ=60)
                                                                    CCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCG                           <  SRR4302532.5200195/94‑1 (MQ=60)
                                                                     CGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGT                          >  SRR4302532.1340746/1‑94 (MQ=60)
                                                                     CGCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGT                          >  SRR4302532.742209/1‑94 (MQ=60)
                                                                     CGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGT                          <  SRR4302532.717479/94‑1 (MQ=60)
                                                                      GCTTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTT                         >  SRR4302532.3825400/1‑94 (MQ=60)
                                                                      GCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCACCGAAGCGTT                         <  SRR4302532.2480531/94‑1 (MQ=60)
                                                                       gatcttcgggaTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCatggtgatt                        <  SRR4302532.3388755/83‑10 (MQ=60)
                                                                        TTTTTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTC                       <  SRR4302532.4696280/94‑1 (MQ=60)
                                                                           TTGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCC                    <  SRR4302532.3201659/94‑1 (MQ=60)
                                                                           TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCC                    >  SRR4302532.842814/1‑94 (MQ=60)
                                                                           TTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCC                    <  SRR4302532.4992124/94‑1 (MQ=60)
                                                                            TGCCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGCCAGTAAATGGATTACCGCCGAAGCGCTTCCCCG                   >  SRR4302532.6161930/1‑94 (MQ=60)
                                                                            TGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCG                   >  SRR4302532.4284529/1‑94 (MQ=60)
                                                                              CCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCG                 >  SRR4302532.1488609/1‑94 (MQ=60)
                                                                              CCCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCG                 <  SRR4302532.5881005/94‑1 (MQ=60)
                                                                              CCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCG                 >  SRR4302532.3137518/1‑94 (MQ=60)
                                                                               CCGTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGG                >  SRR4302532.800831/1‑94 (MQ=60)
                                                                                 GTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGTGTTTCCCCGCGGTG              <  SRR4302532.3715325/94‑1 (MQ=60)
                                                                                 GTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTG              >  SRR4302532.3359087/1‑94 (MQ=60)
                                                                                 GTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTG              <  SRR4302532.5263909/94‑1 (MQ=60)
                                                                                 GTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTG              >  SRR4302532.3251213/1‑94 (MQ=60)
                                                                                 GTTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGCG              >  SRR4302532.443578/1‑94 (MQ=60)
                                                                                 GTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTG              >  SRR4302532.5236752/1‑94 (MQ=60)
                                                                                 GTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTG              >  SRR4302532.5056797/1‑94 (MQ=60)
                                                                                 GTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTG              >  SRR4302532.4119685/1‑94 (MQ=60)
                                                                                  TTCTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGT             <  SRR4302532.4757906/94‑1 (MQ=60)
                                                                                  TTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGT             <  SRR4302532.642474/94‑1 (MQ=60)
                                                                                    CTCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTAT           <  SRR4302532.5918101/94‑1 (MQ=60)
                                                                                     TCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATC          >  SRR4302532.1493172/1‑94 (MQ=60)
                                                                                     TCGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATC          >  SRR4302532.3453981/1‑94 (MQ=60)
                                                                                     TCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCACGCGGTGTATC          >  SRR4302532.1222053/1‑94 (MQ=60)
                                                                                      CGAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGCGTATCC         >  SRR4302532.207276/1‑94 (MQ=60)
                                                                                       GAAAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCC        >  SRR4302532.2833341/1‑94 (MQ=60)
                                                                                       GAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCC        <  SRR4302532.421224/94‑1 (MQ=60)
                                                                                        AAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCA       <  SRR4302532.2738272/94‑1 (MQ=60)
                                                                                         AAGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGGGTATCCCAG      >  SRR4302532.1584268/1‑94 (MQ=60)
                                                                                          AGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGG     >  SRR4302532.957831/1‑94 (MQ=60)
                                                                                          AGCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGG     <  SRR4302532.2341108/94‑1 (MQ=60)
                                                                                          AGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCGGGGGTGATTCCCAGG     >  SRR4302532.4937818/1‑94 (MQ=60)
                                                                                           GCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGA    >  SRR4302532.771977/1‑94 (MQ=60)
                                                                                           GCGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGA    <  SRR4302532.1825598/94‑1 (MQ=60)
                                                                                            CGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGAT   <  SRR4302532.775916/94‑1 (MQ=60)
                                                                                            CGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGAT   <  SRR4302532.5708096/94‑1 (MQ=60)
                                                                                            CGGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGAT   <  SRR4302532.3006369/94‑1 (MQ=60)
                                                                                             AGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATT  >  SRR4302532.4589825/1‑94 (MQ=60)
                                                                                             AGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGAATTAACGCCGAAGCGTTTCCCCGCGGTGCATCCCAGGATT  >  SRR4302532.4589824/1‑94 (MQ=60)
                                                                                             |                                                                                             
GGAATAACCGATGACGAGTAATTCAACAATGTGACCGGAATACCCA‑GGAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATT  >  NC_000913/3902570‑3902755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑