Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	521	238.2	12299412	96.0%	11807435	93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCCG‑‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACT  >  NC_000913/4013084‑4013261

CTTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGG                                                                                          >  SRR4302532.5559094/1‑94 (MQ=60)

 TTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAAT‑CG‑‑GC                                                                                      <  SRR4302532.3581238/94‑1 (MQ=60)

  TTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAAT‑CG‑‑GC‑‑G                                                                                   <  SRR4302532.3843538/94‑1 (MQ=60)

  TTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAAT‑CG‑‑GC‑‑G                                                                                   <  SRR4302532.3843537/94‑1 (MQ=60)

       ATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGGCGAGAATCGGC‑GC‑‑GTTA                                                                                >  SRR4302532.5931398/1‑94 (MQ=60)

       ATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTA                                                                                >  SRR4302532.932341/1‑94 (MQ=60)

          AGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGA                                                                             >  SRR4302532.3899575/1‑94 (MQ=60)

          AGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGA                                                                             >  SRR4302532.5180532/1‑94 (MQ=60)

           GCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGAT                                                                            <  SRR4302532.4872598/94‑1 (MQ=60)

            CAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATC                                                                           <  SRR4302532.5180628/94‑1 (MQ=60)

             AGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCG                                                                          >  SRR4302532.3272198/1‑94 (MQ=60)

             AGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCG                                                                          >  SRR4302532.5202160/1‑94 (MQ=60)

             AGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCG                                                                          <  SRR4302532.1223867/94‑1 (MQ=60)

             AGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCG                                                                          >  SRR4302532.3664750/1‑94 (MQ=60)

              GCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGG                                                                         >  SRR4302532.1152387/1‑94 (MQ=60)

              GCCCGCAGCGCCTGGCGCATGGTTTAAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGG                                                                         <  SRR4302532.2745873/94‑1 (MQ=60)

               CCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAGGCCGCGAATAGGC‑GC‑‑GTTAAGATCGGT                                                                        >  SRR4302532.1495698/1‑94 (MQ=60)

               CCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGT                                                                        <  SRR4302532.2204217/94‑1 (MQ=60)

               CCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGT                                                                        <  SRR4302532.3203293/94‑1 (MQ=60)

                CCGCAGCGCCTGGCGCGTGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGCCCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTT                                                                       <  SRR4302532.5640217/94‑1 (MQ=60)

                CCGCAGCGCCTGGCGCATGCTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTT                                                                       <  SRR4302532.116620/94‑1 (MQ=60)

                 CGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTG                                                                      >  SRR4302532.6306328/1‑94 (MQ=60)

                 CGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTG                                                                      <  SRR4302532.3078560/94‑1 (MQ=60)

                 CGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTG                                                                      >  SRR4302532.180927/1‑94 (MQ=60)

                  GCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGC                                                                     >  SRR4302532.6082037/1‑94 (MQ=60)

                   CAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCG                                                                    >  SRR4302532.5855725/1‑94 (MQ=60)

                   CAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCG                                                                    <  SRR4302532.4036518/94‑1 (MQ=60)

                    AGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGA                                                                   >  SRR4302532.6185089/1‑94 (MQ=60)

                       GCCTGGCGCATGTTTTCACCCTTCTCCTGCGGAATGCTGTTATCCTGCCCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATAT                                                                <  SRR4302532.2490987/94‑1 (MQ=60)

                       GCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATAT                                                                <  SRR4302532.5040050/94‑1 (MQ=60)

                        CCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATC                                                               >  SRR4302532.3067116/1‑94 (MQ=60)

                        CCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATC                                                               >  SRR4302532.1883372/1‑94 (MQ=60)

                         CTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCA                                                              >  SRR4302532.4741479/1‑94 (MQ=60)

                            GCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACA                                                           <  SRR4302532.1738728/94‑1 (MQ=60)

                             CGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAG                                                          >  SRR4302532.6166889/1‑94 (MQ=60)

                             CGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAG                                                          <  SRR4302532.3995347/94‑1 (MQ=60)

                               CATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGT                                                        <  SRR4302532.1501223/94‑1 (MQ=60)

                               CATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GCTAAGATCGGTTGCGATATCAACAGGT                                                        >  SRR4302532.5803650/1‑94 (MQ=60)

                                ATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTT                                                       <  SRR4302532.4450117/94‑1 (MQ=60)

                                ATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTT                                                       >  SRR4302532.4052298/1‑94 (MQ=60)

                                  GGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGT                                                     <  SRR4302532.3132149/94‑1 (MQ=60)

                                   GTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCActaggttggt                                                    >  SRR4302532.1679778/1‑84 (MQ=60)

                                   GTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTT                                                    <  SRR4302532.3503564/94‑1 (MQ=60)

                                   GTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTT                                                    >  SRR4302532.2491907/1‑94 (MQ=60)

                                   GTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTT                                                    >  SRR4302532.3185660/1‑94 (MQ=60)

                                     TTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTC                                                  <  SRR4302532.3037883/94‑1 (MQ=60)

                                     TTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTC                                                  <  SRR4302532.869664/94‑1 (MQ=60)

                                     TTCAACGCCCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTC                                                  <  SRR4302532.3738218/94‑1 (MQ=60)

                                      TCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCG                                                 <  SRR4302532.6298015/94‑1 (MQ=60)

                                         ACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTG                                              <  SRR4302532.4972872/94‑1 (MQ=60)

                                         ACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTG                                              <  SRR4302532.925080/94‑1 (MQ=60)

                                         ACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTG                                              <  SRR4302532.4309675/94‑1 (MQ=60)

                                          CGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGA                                             >  SRR4302532.5300752/1‑94 (MQ=60)

                                           cccctccgGCGGACTGCTGGTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGAGCGGTTGCGATATCAACAGTTTGTTTCGGTGAA                                            <  SRR4302532.4054929/86‑1 (MQ=60)

                                           GCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAA                                            >  SRR4302532.2236864/1‑94 (MQ=60)

                                             TCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATT                                          <  SRR4302532.6165817/94‑1 (MQ=60)

                                             CCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATT                                          <  SRR4302532.2529441/94‑1 (MQ=60)

                                              CTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTC                                         >  SRR4302532.1590947/1‑94 (MQ=60)

                                              CTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTC                                         >  SRR4302532.5538336/1‑94 (MQ=60)

                                              CTCCTGCGGAACGCTGTTATCCTGGCCGCCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTC                                         <  SRR4302532.1132589/94‑1 (MQ=60)

                                               TCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAAGCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCA                                        <  SRR4302532.248224/94‑1 (MQ=60)

                                                CCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAG                                       <  SRR4302532.6277515/94‑1 (MQ=60)

                                                CCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAG                                       <  SRR4302532.4763146/94‑1 (MQ=60)

                                                    CGGAATGCTGTTATCCTGACCATCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCTGTTGCTATATCAACAGGTTGTTTCGGTGAAGTCAGCGAC                                   >  SRR4302532.5670793/1‑94 (MQ=60)

                                                    CGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGAC                                   >  SRR4302532.5511510/1‑94 (MQ=60)

                                                    CGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGAC                                   >  SRR4302532.186347/1‑94 (MQ=60)

                                                    CGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGAC                                   >  SRR4302532.879902/1‑94 (MQ=60)

                                                    CGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGAC                                   <  SRR4302532.5849755/94‑1 (MQ=60)

                                                     GGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACT                                  >  SRR4302532.5411166/1‑94 (MQ=60)

                                                        ATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGT                               >  SRR4302532.1865440/1‑94 (MQ=60)

                                                        ATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGT                               >  SRR4302532.2116578/1‑94 (MQ=60)

                                                         TGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTC                              >  SRR4302532.6157267/1‑94 (MQ=60)

                                                         TGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTC                              <  SRR4302532.5449656/94‑1 (MQ=60)

                                                         TGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTC                              <  SRR4302532.3168845/94‑1 (MQ=60)

                                                         TGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGATGTTTCGGTGAATTCAGCGACTTGTC                              >  SRR4302532.3465025/1‑94 (MQ=60)

                                                          GCTGTTATCCAGTCCACCATATAAGCCGAGAA‑GCG‑‑GCCAGTTAAGATCGGTCGCGATAACTACAGTTTGTTTCGGTGAATTCAGCGACTTGTCG                             <  SRR4302532.5952985/94‑1 (MQ=38)

                                                           CTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGC                            >  SRR4302532.422899/1‑94 (MQ=60)

                                                           CTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGC                            >  SRR4302532.3878604/1‑94 (MQ=60)

                                                           CTGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGC                            <  SRR4302532.3737047/94‑1 (MQ=60)

                                                            TGTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCC                           >  SRR4302532.5970333/1‑94 (MQ=60)

                                                             GTTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCC                          <  SRR4302532.154244/94‑1 (MQ=60)

                                                              TTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCG                         <  SRR4302532.3027359/94‑1 (MQ=60)

                                                              TTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCG                         >  SRR4302532.4827137/1‑94 (MQ=60)

                                                              TTATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCG                         >  SRR4302532.6197139/1‑94 (MQ=60)

                                                               TATCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGT                        >  SRR4302532.5204457/1‑94 (MQ=60)

                                                                 TCCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCA                      <  SRR4302532.3374741/94‑1 (MQ=60)

                                                                  CCTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAG                     <  SRR4302532.3429048/94‑1 (MQ=60)

                                                                   CTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGT                    >  SRR4302532.3306181/1‑94 (MQ=60)

                                                                   CTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGT                    >  SRR4302532.5508749/1‑94 (MQ=60)

                                                                   CTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGT                    >  SRR4302532.3964978/1‑94 (MQ=60)

                                                                   CTGACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGT                    >  SRR4302532.812577/1‑94 (MQ=60)

                                                                     GACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTT                  >  SRR4302532.5373882/1‑94 (MQ=60)

                                                                     GACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTT                  >  SRR4302532.2076433/1‑94 (MQ=60)

                                                                     GACCACCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTT                  <  SRR4302532.1746886/94‑1 (MQ=60)

                                                                     GACCACCATATAAGCCGAGAA‑CCGGCGC‑‑GTTAAGATCGGTTGCGATATCACCAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTT                  <  SRR4302532.1661381/94‑1 (MQ=60)

                                                                         CCCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCG              <  SRR4302532.3008926/94‑1 (MQ=60)

                                                                          CCATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGT             >  SRR4302532.2023501/1‑94 (MQ=60)

                                                                           CATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATCTCACCAGGTTGTTTCGGTGAATTCACCGACTTGTCGCCCGCCAGTATGCCCTA            >  SRR4302532.4660204/1‑94 (MQ=60)

                                                                           CATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTA            >  SRR4302532.2762820/1‑94 (MQ=60)

                                                                            ATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTAC           >  SRR4302532.1939017/1‑94 (MQ=60)

                                                                            ATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTAC           <  SRR4302532.4715872/94‑1 (MQ=60)

                                                                            ATATAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTAC           >  SRR4302532.1659228/1‑94 (MQ=60)

                                                                               AAAGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCAC        <  SRR4302532.3524038/94‑1 (MQ=60)

                                                                                 AGCCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGC      >  SRR4302532.1136948/1‑94 (MQ=60)

                                                                                   CCGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCA    >  SRR4302532.1496392/1‑94 (MQ=60)

                                                                                    CGAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGCACCACGCCAC   <  SRR4302532.4326196/94‑1 (MQ=60)

                                                                                     GAGAATCGGC‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCCTCAGTTTGCCGTACCACGCCACT  >  SRR4302532.3622026/1‑94 (MQ=60)

CTTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCCG‑‑GC‑‑GTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACT  >  NC_000913/4013084‑4013261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`