Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGG  >  NC_000913/4111639‑4111824
                                                                                            |                                                                                             
GACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTT                                                                                              >  SRR4302532.5011656/1‑94 (MQ=60)
GACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCT                                                                                              >  SRR4302532.5267505/1‑94 (MQ=60)
GACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCT                                                                                              >  SRR4302532.3699612/1‑94 (MQ=60)
GACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCT                                                                                              >  SRR4302532.2679100/1‑94 (MQ=60)
 ACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTT                                                                                             >  SRR4302532.5573934/1‑94 (MQ=60)
  CCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTC                                                                                            <  SRR4302532.1530096/94‑1 (MQ=60)
   CAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCG                                                                                           >  SRR4302532.264708/1‑94 (MQ=60)
   CAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCG                                                                                           <  SRR4302532.4214196/94‑1 (MQ=60)
   CAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCG                                                                                           >  SRR4302532.1682302/1‑94 (MQ=60)
   CAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAAGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCG                                                                                           >  SRR4302532.5572242/1‑94 (MQ=60)
    AGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGC                                                                                          >  SRR4302532.357529/1‑94 (MQ=60)
        TTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTCCCGGTTGCCAGCATCCATAGCGCTTCGCAGTG                                                                                      <  SRR4302532.565749/94‑1 (MQ=60)
        TTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTG                                                                                      >  SRR4302532.946826/1‑94 (MQ=60)
        TTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTG                                                                                      <  SRR4302532.565750/94‑1 (MQ=60)
         TTTGAAGCAATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCTAGCATCCATAGCGTTTCGCAGTGC                                                                                     >  SRR4302532.434092/1‑94 (MQ=60)
          TTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCG                                                                                    <  SRR4302532.1624579/94‑1 (MQ=60)
          TTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCG                                                                                    <  SRR4302532.1754911/94‑1 (MQ=60)
          TTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCG                                                                                    <  SRR4302532.3472422/94‑1 (MQ=60)
          TTGAAGCGATCTAAATCTTTACCGAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCG                                                                                    <  SRR4302532.6119786/94‑1 (MQ=60)
             AAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCA                                                                                 <  SRR4302532.6149314/94‑1 (MQ=60)
             AAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCA                                                                                 >  SRR4302532.5889843/1‑94 (MQ=60)
             AAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCA                                                                                 >  SRR4302532.2721637/1‑94 (MQ=60)
                CGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCACTGCGGCAATT                                                                              >  SRR4302532.1857530/1‑94 (MQ=60)
                 GATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTC                                                                             >  SRR4302532.4085930/1‑94 (MQ=60)
                  ATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCA                                                                            >  SRR4302532.665685/1‑94 (MQ=60)
                   TCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCAT                                                                           <  SRR4302532.2117184/94‑1 (MQ=60)
                   TCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCAT                                                                           <  SRR4302532.4786619/94‑1 (MQ=60)
                   TCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCAT                                                                           >  SRR4302532.1004087/1‑94 (MQ=60)
                   TCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCAT                                                                           >  SRR4302532.3782438/1‑94 (MQ=60)
                     TAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCG                                                                         >  SRR4302532.3680755/1‑94 (MQ=60)
                      AAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGA                                                                        >  SRR4302532.2669033/1‑94 (MQ=60)
                       AATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAG                                                                       <  SRR4302532.4289030/94‑1 (MQ=60)
                         TCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCA                                                                     <  SRR4302532.3944114/94‑1 (MQ=60)
                          CTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCAC                                                                    >  SRR4302532.3133210/1‑94 (MQ=60)
                          CTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCAC                                                                    <  SRR4302532.4385465/94‑1 (MQ=60)
                          CTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCAC                                                                    >  SRR4302532.4509627/1‑94 (MQ=60)
                            TTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAA                                                                  >  SRR4302532.2414734/1‑94 (MQ=60)
                             TACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCTGCACTTCATCGAGCACAAA                                                                 >  SRR4302532.3737310/1‑94 (MQ=60)
                             TACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAA                                                                 >  SRR4302532.5377545/1‑94 (MQ=60)
                             TACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCATTGCGGCACTTCATCGAGCACAAA                                                                 >  SRR4302532.3631280/1‑94 (MQ=60)
                               CCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGA                                                               >  SRR4302532.3233482/1‑94 (MQ=60)
                                CTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAA                                                              >  SRR4302532.1657772/1‑94 (MQ=60)
                                CTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAA                                                              >  SRR4302532.3655930/1‑94 (MQ=60)
                                CTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAA                                                              <  SRR4302532.4030816/94‑1 (MQ=60)
                                CTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAA                                                              <  SRR4302532.5703070/94‑1 (MQ=60)
                                CTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGCTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAA                                                              >  SRR4302532.5363390/1‑94 (MQ=60)
                                  AGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTGATCGAGCACAAAGAATC                                                            >  SRR4302532.3533456/1‑94 (MQ=60)
                                  AGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATC                                                            <  SRR4302532.1202879/94‑1 (MQ=60)
                                  AGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATC                                                            <  SRR4302532.3785779/94‑1 (MQ=60)
                                  AGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATC                                                            <  SRR4302532.3237426/94‑1 (MQ=60)
                                  AGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATC                                                            <  SRR4302532.1817512/94‑1 (MQ=60)
                                   GTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCC                                                           >  SRR4302532.2051482/1‑94 (MQ=60)
                                    TTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCT                                                          <  SRR4302532.483967/94‑1 (MQ=60)
                                    TTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCT                                                          <  SRR4302532.1210865/94‑1 (MQ=60)
                                    TTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCT                                                          <  SRR4302532.4364741/94‑1 (MQ=60)
                                    TTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCT                                                          >  SRR4302532.3814425/1‑94 (MQ=60)
                                     TGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTG                                                         >  SRR4302532.2171888/1‑94 (MQ=60)
                                     TGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTG                                                         <  SRR4302532.2859682/94‑1 (MQ=60)
                                      GCAGAATCGATAAATAAGGGCCAATCGCTGTACCAGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGC                                                        >  SRR4302532.1436743/1‑94 (MQ=60)
                                       CAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCC                                                       >  SRR4302532.1590575/1‑94 (MQ=60)
                                        AGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCG                                                      >  SRR4302532.3825581/1‑94 (MQ=60)
                                        AGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCG                                                      >  SRR4302532.6136018/1‑94 (MQ=60)
                                         GAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGC                                                     <  SRR4302532.5619828/94‑1 (MQ=60)
                                          AATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCT                                                    >  SRR4302532.3010298/1‑94 (MQ=60)
                                           ATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTT                                                   >  SRR4302532.5486790/1‑94 (MQ=60)
                                             CGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCG                                                 <  SRR4302532.1934065/94‑1 (MQ=60)
                                             CGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCG                                                 <  SRR4302532.2502284/94‑1 (MQ=60)
                                             CGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCG                                                 <  SRR4302532.3224508/94‑1 (MQ=60)
                                              GATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCGTCGAGCACAAAGAATCGTGCCGCTTCGC                                                >  SRR4302532.5422988/1‑94 (MQ=60)
                                              GATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGC                                                >  SRR4302532.736784/1‑94 (MQ=60)
                                               ATAAATAAGTTCAAATCGTTGTAACGGTTGCTTGCATCCATAGCGTTTCGCAGTGCGGCACTTCATGGAGCCCAAAGACTCCTGCAGGTTCGCT                                               <  SRR4302532.15948/94‑1 (MQ=28)
                                               ATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCT                                               >  SRR4302532.2284341/1‑94 (MQ=60)
                                                TAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTA                                              >  SRR4302532.4880277/1‑94 (MQ=60)
                                                  AATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAAC                                            <  SRR4302532.5712346/94‑1 (MQ=60)
                                                   ATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACC                                           >  SRR4302532.1835468/1‑94 (MQ=60)
                                                   ATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACC                                           <  SRR4302532.3174253/94‑1 (MQ=60)
                                                    TAAGGGCCAATCGCTGTACCGGTTTCAAGCATCCATAGCGCTTCGCGGTGCGGCACTTCATCGAGCACAAAGAATCCTTCCGCTTCGCTAACCA                                          <  SRR4302532.6244552/94‑1 (MQ=60)
                                                     AAGGGCCAATCGCTGTACGGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCAC                                         >  SRR4302532.1967444/1‑94 (MQ=60)
                                                     AAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCAC                                         <  SRR4302532.1094651/94‑1 (MQ=60)
                                                     AAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCAC                                         >  SRR4302532.2541891/1‑94 (MQ=60)
                                                      AGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACC                                        <  SRR4302532.126778/94‑1 (MQ=60)
                                                       GGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCT                                       <  SRR4302532.1832165/94‑1 (MQ=60)
                                                       GGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCT                                       >  SRR4302532.1955254/1‑94 (MQ=60)
                                                       GGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGCGCGGCACTTCATCGAGCACCAAGAATCATGCCGCTTCGCTAcctcccc                                       >  SRR4302532.1955253/1‑87 (MQ=60)
                                                          CCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCA                                    <  SRR4302532.75461/94‑1 (MQ=60)
                                                          CCAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCA                                    >  SRR4302532.1663438/1‑94 (MQ=60)
                                                           CAATCGCTTTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCAC                                   <  SRR4302532.1958164/94‑1 (MQ=60)
                                                           CAATCGCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCCCTAACAACCTGCAC                                   >  SRR4302532.2828327/1‑94 (MQ=60)
                                                            AATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACGAAGAATCCGGCCGCTTCGCTAACCACCTGCGCT                                  >  SRR4302532.3343150/1‑94 (MQ=60)
                                                             ATCGCTGTGCCTGTTCCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTACCCACCTGCACTT                                 <  SRR4302532.2401054/94‑1 (MQ=60)
                                                               CGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCA                               >  SRR4302532.1342338/1‑94 (MQ=60)
                                                                GCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCAT                              >  SRR4302532.4277125/1‑94 (MQ=60)
                                                                GCTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCAT                              <  SRR4302532.5769957/94‑1 (MQ=60)
                                                                 CTGTGCCGGTTGTCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATC                             <  SRR4302532.2316206/94‑1 (MQ=60)
                                                                 CTGTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATC                             >  SRR4302532.2969216/1‑94 (MQ=60)
                                                                  TGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCG                            >  SRR4302532.4746110/1‑94 (MQ=60)
                                                                   GTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGC                           >  SRR4302532.1385696/1‑94 (MQ=60)
                                                                   GTACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGC                           >  SRR4302532.5411792/1‑94 (MQ=60)
                                                                    TACCGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCC                          >  SRR4302532.2006409/1‑94 (MQ=60)
                                                                     ACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCT                         <  SRR4302532.2667150/94‑1 (MQ=60)
                                                                      CCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTG                        >  SRR4302532.3050847/1‑94 (MQ=60)
                                                                      CCGGTTGCCAGCATCCATAGCGGTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGGCTG                        >  SRR4302532.3664874/1‑94 (MQ=60)
                                                                       CGGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGG                       <  SRR4302532.5103766/94‑1 (MQ=60)
                                                                        GGTTGCCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGT                      >  SRR4302532.2116983/1‑94 (MQ=60)
                                                                             CCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAG                 <  SRR4302532.3625945/94‑1 (MQ=60)
                                                                             CCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAG                 <  SRR4302532.1212580/94‑1 (MQ=60)
                                                                             CCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAG                 >  SRR4302532.4728577/1‑94 (MQ=60)
                                                                             CCAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAG                 <  SRR4302532.4218477/94‑1 (MQ=60)
                                                                              CAGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGT                >  SRR4302532.2495383/1‑94 (MQ=60)
                                                                               CGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCAAAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTG               <  SRR4302532.1933433/94‑1 (MQ=60)
                                                                               AGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTG               <  SRR4302532.1737862/94‑1 (MQ=60)
                                                                               AGCATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTG               <  SRR4302532.885442/94‑1 (MQ=60)
                                                                                 CATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCC             >  SRR4302532.1688771/1‑94 (MQ=60)
                                                                                 CATCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCC             <  SRR4302532.5859375/94‑1 (MQ=60)
                                                                                   TCCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGC           <  SRR4302532.3813687/94‑1 (MQ=60)
                                                                                    CCATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCC          >  SRR4302532.5125988/1‑94 (MQ=60)
                                                                                      ATAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAG        >  SRR4302532.4971437/1‑94 (MQ=60)
                                                                                       TAGCGCTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGT       >  SRR4302532.3458573/1‑94 (MQ=60)
                                                                                          CGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGT    >  SRR4302532.5336499/1‑94 (MQ=60)
                                                                                            TTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGG  >  SRR4302532.5715623/1‑94 (MQ=60)
                                                                                            |                                                                                             
GACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGG  >  NC_000913/4111639‑4111824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑