Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGATTCGGTGACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCATTTACATTATTCG  >  NC_000913/4113115‑4113300
                                                                                            |                                                                                             
TGATTCGGTGACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGG                                                                                              >  SRR4302532.1778003/1‑94 (MQ=60)
TGATTCGGTGACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAG                                                                                              >  SRR4302532.2587237/1‑94 (MQ=60)
 GATTCGGTGACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGG                                                                                             <  SRR4302532.4102013/94‑1 (MQ=60)
  ATTCGGTGACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGG                                                                                            <  SRR4302532.496408/94‑1 (MQ=60)
   TTCGGTGACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGA                                                                                           <  SRR4302532.388856/94‑1 (MQ=60)
   TTCGGTGACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCACAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGA                                                                                           <  SRR4302532.1136521/94‑1 (MQ=60)
    TCGGTGACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAG                                                                                          <  SRR4302532.3503493/94‑1 (MQ=60)
    TCGGTGACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAG                                                                                          <  SRR4302532.942482/94‑1 (MQ=60)
    TCGGTGACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAG                                                                                          <  SRR4302532.4184843/94‑1 (MQ=60)
      GGTGACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGG                                                                                        <  SRR4302532.629430/94‑1 (MQ=60)
      GGTGACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGG                                                                                        >  SRR4302532.5484346/1‑94 (MQ=60)
       GTGACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGA                                                                                       <  SRR4302532.5182578/94‑1 (MQ=60)
         GACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATT                                                                                     <  SRR4302532.4464422/94‑1 (MQ=60)
          ACGCGGGAAAATTCGAAGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGGAGGGAGGGATTA                                                                                    >  SRR4302532.4617617/1‑94 (MQ=60)
            GCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATT                                                                                  <  SRR4302532.1200991/94‑1 (MQ=60)
               GGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGAT                                                                               <  SRR4302532.13816/94‑1 (MQ=60)
                GAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATG                                                                              <  SRR4302532.1590486/94‑1 (MQ=60)
                GAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATG                                                                              <  SRR4302532.1788538/94‑1 (MQ=60)
                 AAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGT                                                                             >  SRR4302532.19073/1‑94 (MQ=60)
                    ATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTG                                                                          <  SRR4302532.2150128/94‑1 (MQ=60)
                     TTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGC                                                                         <  SRR4302532.5935768/94‑1 (MQ=60)
                     TTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGC                                                                         <  SRR4302532.1963573/94‑1 (MQ=60)
                     TTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGC                                                                         <  SRR4302532.2718881/94‑1 (MQ=60)
                        GATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGG                                                                      <  SRR4302532.743024/94‑1 (MQ=60)
                        GATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGG                                                                      <  SRR4302532.3174010/94‑1 (MQ=60)
                         ATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGG                                                                     <  SRR4302532.5437941/94‑1 (MQ=60)
                           GGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGGTTATTGATGTGTGCGGGGTG                                                                   >  SRR4302532.5717608/1‑94 (MQ=60)
                           GGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTT                                                                   <  SRR4302532.2910532/94‑1 (MQ=60)
                           GGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTT                                                                   <  SRR4302532.1468943/94‑1 (MQ=60)
                           GGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTT                                                                   <  SRR4302532.2899389/94‑1 (MQ=60)
                             CAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGC                                                                 >  SRR4302532.42528/1‑94 (MQ=60)
                             CAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGC                                                                 <  SRR4302532.5925415/94‑1 (MQ=60)
                              AAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCC                                                                >  SRR4302532.172914/1‑94 (MQ=60)
                                GTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGTGGGTAGGGATTATTGATGTGTGCGGGGTTGCCGC                                                              >  SRR4302532.5418489/1‑94 (MQ=60)
                                 TTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCC                                                             <  SRR4302532.3024870/94‑1 (MQ=60)
                                 TTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCC                                                             >  SRR4302532.190147/1‑94 (MQ=60)
                                  TCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCG                                                            <  SRR4302532.6267235/94‑1 (MQ=60)
                                   CTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGC                                                           >  SRR4302532.6153612/1‑94 (MQ=60)
                                   CTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGC                                                           >  SRR4302532.5432370/1‑94 (MQ=60)
                                     CGTCTCATAGCAAACTCTAAGCGGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCAC                                                         <  SRR4302532.1416882/94‑1 (MQ=60)
                                     CGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCAC                                                         >  SRR4302532.1813095/1‑94 (MQ=60)
                                     CGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCAC                                                         <  SRR4302532.3681541/94‑1 (MQ=60)
                                     CGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTG‑CCCCGCACG                                                        <  SRR4302532.6102038/94‑1 (MQ=60)
                                     CGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCAC                                                         <  SRR4302532.6092664/94‑1 (MQ=60)
                                      GTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGGGCGGGGGTGGCCCCGCGCG                                                        >  SRR4302532.1253321/1‑94 (MQ=60)
                                      GGCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGgccccccact                                                        >  SRR4302532.4841544/1‑84 (MQ=60)
                                       TCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGGCCCCGCGCGT                                                       >  SRR4302532.1275574/1‑94 (MQ=60)
                                        CTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTT                                                      <  SRR4302532.5126235/94‑1 (MQ=60)
                                        CTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTT                                                      >  SRR4302532.1436333/1‑94 (MQ=60)
                                        CTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTT                                                      >  SRR4302532.3572948/1‑94 (MQ=60)
                                         TCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTT                                                     >  SRR4302532.3085891/1‑94 (MQ=60)
                                         TCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTT                                                     >  SRR4302532.6078888/1‑94 (MQ=60)
                                           ATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCG                                                   >  SRR4302532.882751/1‑94 (MQ=60)
                                           ATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCG                                                   >  SRR4302532.882750/1‑94 (MQ=60)
                                           ATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTCCCCCCGCACGTTTCG                                                   <  SRR4302532.3010765/94‑1 (MQ=60)
                                            aagaAAACTCAAAGCAGTAAGGAATGGCGCGAAGTGTAGCACGGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGG                                                  <  SRR4302532.733200/90‑1 (MQ=60)
                                            TAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGG                                                  >  SRR4302532.2791810/1‑94 (MQ=60)
                                                AACCTCTAAGCAGTAAGGAATGGCGCTAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACT                                              <  SRR4302532.5294197/94‑1 (MQ=60)
                                                AAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACT                                              <  SRR4302532.1169529/94‑1 (MQ=60)
                                                 AACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTA                                             >  SRR4302532.1442876/1‑94 (MQ=60)
                                                  ACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTAC                                            >  SRR4302532.2267561/1‑94 (MQ=60)
                                                   CTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACC                                           >  SRR4302532.3387478/1‑94 (MQ=60)
                                                   CTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACC                                           >  SRR4302532.3262729/1‑94 (MQ=60)
                                                     CTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGGTGCCCCCGCACGTTTCGGGACTACCGG                                         >  SRR4302532.4689128/1‑94 (MQ=60)
                                                     CTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGG                                         >  SRR4302532.2944218/1‑94 (MQ=60)
                                                       AAGCAGTAAGGAATGGCGCGAAGTGTAGCACGGGGGAGGGGAGGTATTATTGATGTGTGGGGGTTTCCCCCCGCACGTTTCGGGACTACCGGAT                                       <  SRR4302532.3825118/94‑1 (MQ=60)
                                                       AAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGAT                                       <  SRR4302532.3449936/94‑1 (MQ=60)
                                                       AAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGAATTATTGATGTGTGCGGGGTGGCCCCCGCACGTTTCGGGACTACCGGAT                                       <  SRR4302532.4454365/94‑1 (MQ=60)
                                                           AGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGG                                   >  SRR4302532.1142249/1‑94 (MQ=60)
                                                            GTAAGGAGTGGCGCGAAGTGTAGCACGGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGC                                  <  SRR4302532.437240/94‑1 (MQ=60)
                                                            GTAAGGAATGGCGCGAGGTGGAGCCGGGGGGAGGGGAGGAATTATTGATGTGTGGGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGC                                  <  SRR4302532.437241/94‑1 (MQ=60)
                                                            GTAAGGAATGGCGCGAAGTGTAGCACAGGGGCGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGA                                  >  SRR4302532.5289557/1‑94 (MQ=60)
                                                            GTAAGGAATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGC                                  >  SRR4302532.1596281/1‑94 (MQ=60)
                                                            GTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGC                                  >  SRR4302532.4532225/1‑94 (MQ=60)
                                                             TAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCA                                 >  SRR4302532.1959546/1‑94 (MQ=60)
                                                             TAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCA                                 >  SRR4302532.1054890/1‑94 (MQ=60)
                                                               AGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATA                               >  SRR4302532.217001/1‑94 (MQ=60)
                                                                  AATGGCGCGAAGTGTAGCCCAGGGGAGGGGGGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAAC                            <  SRR4302532.1998964/94‑1 (MQ=60)
                                                                  AATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAAC                            <  SRR4302532.3412486/94‑1 (MQ=60)
                                                                  AATGGCGCGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAAC                            <  SRR4302532.1998965/94‑1 (MQ=60)
                                                                  AATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAAC                            >  SRR4302532.6199622/1‑94 (MQ=60)
                                                                   ATGGCGGGAAGTGGAGCACAGGGGAAGGGAGGTATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACG                           <  SRR4302532.1767053/94‑1 (MQ=60)
                                                                   ATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGGTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACG                           >  SRR4302532.2586323/1‑94 (MQ=60)
                                                                   ATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGGGGGGGGGTGCCCCCGCACGTTTCGGGGCTACCGGATGCGGCACAAACG                           >  SRR4302532.2586322/1‑94 (MQ=60)
                                                                     GGCGCGAAGTGTAGCACAGGGGAGGGGAGGTATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCT                         <  SRR4302532.3299727/94‑1 (MQ=60)
                                                                       CGAGAAGTGTAGCAGAGGGGAGGGGAGTGTTTATTGGTGTGGGGGGGGTCCCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTC                       <  SRR4302532.130918/94‑1 (MQ=46)
                                                                         GGAAGTGTAGCACGGGGGGGGGGGGGTATTATTGATGTGTGGGGGGTTCCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCAT                     <  SRR4302532.4913665/94‑1 (MQ=60)
                                                                         CGAAGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCAT                     <  SRR4302532.4015214/94‑1 (MQ=60)
                                                                         CGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCAT                     <  SRR4302532.3358396/94‑1 (MQ=60)
                                                                           AAGTGTAGCACAGGGGGAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTC                   >  SRR4302532.5205995/1‑94 (MQ=60)
                                                                           AAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTC                   >  SRR4302532.3705660/1‑94 (MQ=60)
                                                                            ggttgagcaggGGGGAGGGGAGGGATTATTAGTGTGTGGGGGATTGCCCCGGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCG                  <  SRR4302532.5886032/83‑1 (MQ=60)
                                                                            AGTGTAGCACAGGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCG                  >  SRR4302532.4113084/1‑94 (MQ=60)
                                                                             GTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGG                 >  SRR4302532.1520557/1‑94 (MQ=60)
                                                                                GAGCAGAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTCCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCAT              <  SRR4302532.3690699/94‑1 (MQ=60)
                                                                                  GCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCATTT            <  SRR4302532.5453758/94‑1 (MQ=60)
                                                                                  GCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCATTT            <  SRR4302532.904265/94‑1 (MQ=60)
                                                                                  GCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCATTT            <  SRR4302532.5360334/94‑1 (MQ=60)
                                                                                    cgAGGGGAAGGGAGGTATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCATTTAC          <  SRR4302532.6035143/92‑1 (MQ=60)
                                                                                     CAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGGTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCATTTACA         >  SRR4302532.4093013/1‑94 (MQ=60)
                                                                                       GGGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCATTTACATT       >  SRR4302532.4179011/1‑94 (MQ=60)
                                                                                       GGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCATTTACATT       <  SRR4302532.1900374/94‑1 (MQ=60)
                                                                                        GGGAGGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCATTTACATTA      <  SRR4302532.4427065/94‑1 (MQ=60)
                                                                                        GGGAAGGGAGTGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCATTTACATTA      <  SRR4302532.3785236/94‑1 (MQ=60)
                                                                                         GGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCATTTACATTAT     <  SRR4302532.1164209/94‑1 (MQ=60)
                                                                                           AGGGGAGGGATAATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCATTTACATTATTC   <  SRR4302532.6321871/94‑1 (MQ=60)
                                                                                            GGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCATTTACATTATTCG  <  SRR4302532.2829577/94‑1 (MQ=60)
                                                                                            |                                                                                             
TGATTCGGTGACGCGGGAAAATTCGATGGCAAGTTCTCGTCTCATAGCAAACTCTAAGCAGTAAGGAATGGCGCGAAGTGTAGCACAGGGGAAGGGAGGGATTATTGATGTGTGCGGGGTTGCCCCCGCACGTTTCGGGACTACCGGATGCGGCATAAACGCTTCATTCGGCATTTACATTATTCG  >  NC_000913/4113115‑4113300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑