Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTATGGCTAACCCGAGT  >  NC_000913/4175902‑4176087
                                                                                              |                                                                                             
CACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGG                                                                                               <  SRR4302532.3260858/94‑1 (MQ=60)
CACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGG                                                                                               <  SRR4302532.4161717/94‑1 (MQ=60)
 ACAAGTCGGGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGTCCGTAAAACGA‑TTTTTTATATCACGGCGAGCCTTTCAGGG                                                                                              >  SRR4302532.416651/1‑94 (MQ=60)
   AAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGC                                                                                            >  SRR4302532.3294754/1‑94 (MQ=60)
   AAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGC                                                                                            <  SRR4302532.5745779/94‑1 (MQ=60)
    AGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCG                                                                                           >  SRR4302532.3635842/1‑94 (MQ=60)
      GCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTT                                                                                         <  SRR4302532.610837/94‑1 (MQ=60)
      GCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTT                                                                                         <  SRR4302532.5283186/94‑1 (MQ=60)
        GTGAGATTGGAATACAATTTCGCGTTTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTAT                                                                                       <  SRR4302532.1821062/94‑1 (MQ=60)
        GTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTAT                                                                                       <  SRR4302532.3096063/94‑1 (MQ=60)
         TGAGATTCGAATACAATTTCGCGCTTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATT                                                                                      <  SRR4302532.2035049/94‑1 (MQ=60)
           AGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAC                                                                                    >  SRR4302532.2919016/1‑94 (MQ=60)
              TTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCA                                                                                 <  SRR4302532.5921829/94‑1 (MQ=60)
                GGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTGAAACCA‑TTTTTTATATCACCGGGAGCCTCTCAGACGCGTTATTACCCAAC                                                                               >  SRR4302532.2488229/1‑94 (MQ=60)
                 GAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTCCCCAACT                                                                              <  SRR4302532.2182833/94‑1 (MQ=60)
                  AATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTT                                                                             >  SRR4302532.2468736/1‑94 (MQ=60)
                  AATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTT                                                                             >  SRR4302532.621977/1‑94 (MQ=60)
                   ATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTG                                                                            >  SRR4302532.5734677/1‑94 (MQ=60)
                   ATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTG                                                                            >  SRR4302532.6064543/1‑94 (MQ=60)
                   ATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTG                                                                            <  SRR4302532.1754965/94‑1 (MQ=60)
                     ACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAG                                                                          <  SRR4302532.471305/94‑1 (MQ=60)
                      CAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGG                                                                         <  SRR4302532.1029214/94‑1 (MQ=60)
                         TTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAAT                                                                      <  SRR4302532.2157253/94‑1 (MQ=60)
                           TCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTT                                                                    <  SRR4302532.3018358/94‑1 (MQ=60)
                            CGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTA                                                                   >  SRR4302532.4966783/1‑94 (MQ=60)
                            CGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTA                                                                   >  SRR4302532.3677544/1‑94 (MQ=60)
                            CGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTA                                                                   <  SRR4302532.707347/94‑1 (MQ=60)
                            CGCGCCTTTTGTTTTTATGGGCCATGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTA                                                                   <  SRR4302532.4627982/94‑1 (MQ=60)
                              CGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATA                                                                 <  SRR4302532.174076/94‑1 (MQ=60)
                              CGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATA                                                                 >  SRR4302532.3656554/1‑94 (MQ=60)
                                CCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAAT                                                               <  SRR4302532.1285395/94‑1 (MQ=60)
                                CCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAAT                                                               <  SRR4302532.621535/94‑1 (MQ=60)
                                 CTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATG                                                              >  SRR4302532.1366141/1‑94 (MQ=60)
                                 CTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATG                                                              >  SRR4302532.5155025/1‑94 (MQ=60)
                                 CTTTTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATG                                                              <  SRR4302532.2055678/94‑1 (MQ=60)
                                    TTGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCT                                                           <  SRR4302532.551750/94‑1 (MQ=60)
                                     TGTTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTA                                                          <  SRR4302532.1308986/94‑1 (MQ=60)
                                       TTTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAG                                                        <  SRR4302532.6310055/94‑1 (MQ=60)
                                        TTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGA                                                       >  SRR4302532.5584530/1‑94 (MQ=60)
                                        TTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGA                                                       <  SRR4302532.41798/94‑1 (MQ=60)
                                        TTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGA                                                       >  SRR4302532.3222946/1‑94 (MQ=60)
                                        TTTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACGTGAGGAATTTATAATGGCTAAGA                                                       >  SRR4302532.3611743/1‑94 (MQ=60)
                                         TTTATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAA                                                      >  SRR4302532.2000137/1‑94 (MQ=60)
                                           TATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAG                                                    >  SRR4302532.396430/1‑94 (MQ=60)
                                           TATGGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAG                                                    <  SRR4302532.2542844/94‑1 (MQ=60)
                                            atgGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGT                                                   >  SRR4302532.2831507/4‑94 (MQ=60)
                                             tgGGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTA                                                  >  SRR4302532.2570854/3‑94 (MQ=60)
                                             G‑GGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTAC                                                 <  SRR4302532.1026411/94‑1 (MQ=60)
                                               GGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACA                                                <  SRR4302532.4468873/94‑1 (MQ=60)
                                               GGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACA                                                <  SRR4302532.5393084/94‑1 (MQ=60)
                                               GGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACA                                                <  SRR4302532.2072473/94‑1 (MQ=60)
                                                GCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA                                               <  SRR4302532.1078278/94‑1 (MQ=60)
                                                 CCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTTAGGAATTTATAATGGCTAAGAAAGTACAAG                                              <  SRR4302532.5258476/94‑1 (MQ=60)
                                                 CCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAG                                              >  SRR4302532.5858785/1‑94 (MQ=60)
                                                 CCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAG                                              >  SRR4302532.188368/1‑94 (MQ=60)
                                                  CTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGC                                             >  SRR4302532.3265487/1‑94 (MQ=60)
                                                  CTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGC                                             <  SRR4302532.3423990/94‑1 (MQ=60)
                                                  CTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGC                                             >  SRR4302532.810031/1‑94 (MQ=60)
                                                  CTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTGATAATGGCTAAGAAAGTACAAGC                                             >  SRR4302532.3628389/1‑94 (MQ=60)
                                                   TTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCC                                            <  SRR4302532.3489502/94‑1 (MQ=60)
                                                   TTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCC                                            <  SRR4302532.6195548/94‑1 (MQ=60)
                                                   TTGCCCATAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCC                                            >  SRR4302532.1251764/1‑94 (MQ=60)
                                                     GCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTA                                          <  SRR4302532.2933902/94‑1 (MQ=60)
                                                      CCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTAT                                         <  SRR4302532.3924137/94‑1 (MQ=60)
                                                      CCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTAT                                         >  SRR4302532.3130210/1‑94 (MQ=60)
                                                      CACGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTAT                                         <  SRR4302532.6092880/94‑1 (MQ=60)
                                                        CGTAAAACGATTTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCACCTTGAGGAATTTATAATGGCTAAGAAAGAACAAGCCTATT                                        >  SRR4302532.271474/1‑94 (MQ=60)
                                                        CGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGT                                       >  SRR4302532.4461774/1‑94 (MQ=60)
                                                        CGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGT                                       <  SRR4302532.1379663/94‑1 (MQ=60)
                                                         GTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTC                                      >  SRR4302532.1547186/1‑94 (MQ=60)
                                                          TAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCA                                     >  SRR4302532.2891497/1‑94 (MQ=60)
                                                          TAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCA                                     <  SRR4302532.3020014/94‑1 (MQ=60)
                                                           AAAACGA‑TTTTTTATATCACGGGGAGCCTCTCCGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAC                                    >  SRR4302532.2311221/1‑94 (MQ=60)
                                                           AAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAA                                    >  SRR4302532.427187/1‑94 (MQ=60)
                                                           AAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAA                                    >  SRR4302532.2311220/1‑94 (MQ=60)
                                                           AAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAA                                    >  SRR4302532.1508683/1‑94 (MQ=60)
                                                            AAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAG                                   <  SRR4302532.1472199/94‑1 (MQ=60)
                                                            AAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAG                                   <  SRR4302532.1482002/94‑1 (MQ=60)
                                                            AAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAG                                   >  SRR4302532.5414163/1‑94 (MQ=60)
                                                            AAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAG                                   >  SRR4302532.2285688/1‑94 (MQ=60)
                                                            AAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAG                                   <  SRR4302532.573071/94‑1 (MQ=60)
                                                              ACGT‑TTTTTTATATCGCGGGGAGCCTCTCAGTGGAGTTATTCCCCAACTGGAGGAATTTATAATGGCTAAGAATGTCCAAGCCTATGTCAAGCT                                 <  SRR4302532.3871438/94‑1 (MQ=60)
                                                              ACGA‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCT                                 <  SRR4302532.3039433/94‑1 (MQ=60)
                                                              ACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCT                                 >  SRR4302532.5568728/1‑94 (MQ=60)
                                                              ACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCT                                 <  SRR4302532.4770171/94‑1 (MQ=60)
                                                                GA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGC                               >  SRR4302532.3016256/1‑94 (MQ=60)
                                                                 A‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCA                              <  SRR4302532.902098/94‑1 (MQ=60)
                                                                 A‑TTTTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCA                              <  SRR4302532.5487356/94‑1 (MQ=60)
                                                                 A‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCA                              >  SRR4302532.1369582/1‑94 (MQ=60)
                                                                     TTTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGT                           <  SRR4302532.5171304/94‑1 (MQ=60)
                                                                      TTTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTT                          <  SRR4302532.5713637/94‑1 (MQ=60)
                                                                      TTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTT                          <  SRR4302532.5378574/94‑1 (MQ=60)
                                                                       TTATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTG                         <  SRR4302532.6276040/94‑1 (MQ=60)
                                                                        TATATCACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGC                        >  SRR4302532.521203/1‑94 (MQ=60)
                                                                              agggggcgcgtgTCAGAGTCGTTATGACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCGGG                  <  SRR4302532.1216788/82‑1 (MQ=60)
                                                                              ACGGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGG                  >  SRR4302532.5123451/1‑94 (MQ=60)
                                                                                GGGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGCTGCAGCTGGAA                >  SRR4302532.1656985/1‑94 (MQ=60)
                                                                                GGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTA                >  SRR4302532.4537396/1‑94 (MQ=60)
                                                                                 GGGGGCCTCTCAGAGGCGTTATTCCCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTAT               <  SRR4302532.1514980/94‑1 (MQ=60)
                                                                                 GGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTAT               <  SRR4302532.4777760/94‑1 (MQ=60)
                                                                                 GGGAGCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTAT               <  SRR4302532.1710283/94‑1 (MQ=60)
                                                                                 GGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTAT               <  SRR4302532.4718023/94‑1 (MQ=60)
                                                                                 GGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTAT               <  SRR4302532.1514979/94‑1 (MQ=60)
                                                                                  GGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTATG              <  SRR4302532.5374339/94‑1 (MQ=60)
                                                                                    AGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTATGGC            >  SRR4302532.2520858/1‑94 (MQ=60)
                                                                                     GCCTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTATGGCT           >  SRR4302532.4091596/1‑94 (MQ=60)
                                                                                       CTCTCAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTATGGCTAA         >  SRR4302532.2638754/1‑94 (MQ=60)
                                                                                         CTCAGGGGTGTTATAACCCACCTTGAGGAATTGATAATGGCTAAGAAAGGACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTATGGCTAACC       <  SRR4302532.2904022/94‑1 (MQ=60)
                                                                                          TCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTATGGCTAACCC      <  SRR4302532.4504628/94‑1 (MQ=60)
                                                                                           CAGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTATGGCTAACCCG     <  SRR4302532.4916185/94‑1 (MQ=60)
                                                                                            AGGGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTATGGCTAACCCGA    >  SRR4302532.2312137/1‑94 (MQ=60)
                                                                                            AGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTATGGCTAACCCGA    >  SRR4302532.4877634/1‑94 (MQ=60)
                                                                                              GGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTATGGCTAACCCGAGT  <  SRR4302532.3866500/94‑1 (MQ=60)
                                                                                              |                                                                                             
CACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GGCCTTGCCCGTAAAACGA‑TTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAAGCCTATGTCAAGCTGCAGGTTGCAGCTGGTATGGCTAACCCGAGT  >  NC_000913/4175902‑4176087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑