Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATGCTGGAAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACTGACGCCACAG  >  NC_000913/4303676‑4303861
                                                                                            |                                                                                             
ATGCTGGAAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCA                                                                                              >  SRR4302532.4895898/1‑94 (MQ=60)
  GCTGGAAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAAT                                                                                            <  SRR4302532.481820/94‑1 (MQ=60)
  GCTGGAAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAAT                                                                                            <  SRR4302532.3380615/94‑1 (MQ=60)
  GCTGGAAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAAT                                                                                            <  SRR4302532.3380614/94‑1 (MQ=60)
   CTGGAAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATG                                                                                           <  SRR4302532.426864/94‑1 (MQ=60)
   CTGGAAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATG                                                                                           <  SRR4302532.4166300/94‑1 (MQ=60)
   CTGGAAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAAAGCAATG                                                                                           >  SRR4302532.6003369/1‑94 (MQ=60)
    TGGAAGTAAAGGTCAAGTGCGGCTTGTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGT                                                                                          <  SRR4302532.3003910/94‑1 (MQ=60)
     GGAAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGGCTTTCTCGCCCTCAACGAACGCAATGTT                                                                                         >  SRR4302532.5854948/1‑94 (MQ=60)
     GGAAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCTCCCTCAACGAACGCAATGTT                                                                                         <  SRR4302532.4509645/94‑1 (MQ=60)
     GGAAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTT                                                                                         >  SRR4302532.3495531/1‑94 (MQ=60)
     GGAAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTT                                                                                         <  SRR4302532.1570237/94‑1 (MQ=60)
       AAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCCGCGGGGCGATAACAATAATGCCTTTCTCGCCCTCCACGAACGTAATGTTAA                                                                                       >  SRR4302532.4283429/1‑94 (MQ=60)
       AAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAG                                                                                       >  SRR4302532.1202551/1‑94 (MQ=60)
       AAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAG                                                                                       >  SRR4302532.3888089/1‑94 (MQ=60)
        AGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGA                                                                                      <  SRR4302532.5792487/94‑1 (MQ=60)
         GTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAG                                                                                     <  SRR4302532.3124237/94‑1 (MQ=60)
          TAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGGCTTTCTCGCCCTCAACGAACGCCATGTTAGAGA                                                                                    >  SRR4302532.2288588/1‑94 (MQ=60)
          TAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGA                                                                                    <  SRR4302532.328661/94‑1 (MQ=60)
          TAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGGCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCCATGTTAGAGA                                                                                    >  SRR4302532.2018970/1‑94 (MQ=60)
           AAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGAT                                                                                   <  SRR4302532.1507849/94‑1 (MQ=60)
            AAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATA                                                                                  <  SRR4302532.6195295/94‑1 (MQ=60)
             AGGTCGAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATAT                                                                                 <  SRR4302532.5644547/94‑1 (MQ=60)
             AGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATAT                                                                                 <  SRR4302532.4058851/94‑1 (MQ=60)
              GGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCCGCGGGTCGATAAAAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATC                                                                                >  SRR4302532.2753455/1‑94 (MQ=60)
              GGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATC                                                                                <  SRR4302532.14297/94‑1 (MQ=60)
                TCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCT                                                                              <  SRR4302532.3043603/94‑1 (MQ=60)
                GCAAGTGCCGCTTTTGCGGCAGGCCGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCT                                                                              <  SRR4302532.1309462/94‑1 (MQ=60)
                  AAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGG                                                                            <  SRR4302532.3719359/94‑1 (MQ=60)
                  AAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGG                                                                            <  SRR4302532.4962430/94‑1 (MQ=60)
                  AAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGG                                                                            <  SRR4302532.3311544/94‑1 (MQ=60)
                   AGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGGCTTTCTCGCCCTCAACGAACGGAATGTTAGAGATATCCTGGC                                                                           >  SRR4302532.3545176/1‑94 (MQ=60)
                   AGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGC                                                                           <  SRR4302532.3792420/94‑1 (MQ=60)
                   AGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGGCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGC                                                                           >  SRR4302532.5462099/1‑94 (MQ=60)
                     TGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCCATGTTAGAGATATCCTGGCCG                                                                         >  SRR4302532.6061927/1‑94 (MQ=60)
                      GCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGC                                                                        >  SRR4302532.971787/1‑94 (MQ=60)
                       CGGCTTTTGCGGCAGGCGGCGTCACCCGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCCACGAACGTAATGTTAGAGATATCCTGGCCccc                                                                       >  SRR4302532.1728074/1‑91 (MQ=60)
                       CGGCTTTTGCGGCAGGCGGCGTCACCCGCGGGGCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCG                                                                       >  SRR4302532.194929/1‑94 (MQ=60)
                       CGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGGCGATAACAATAATGGCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCG                                                                       >  SRR4302532.194927/1‑94 (MQ=60)
                          CTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCAC                                                                    >  SRR4302532.4753430/1‑94 (MQ=60)
                              TGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGA                                                                <  SRR4302532.1576887/94‑1 (MQ=60)
                               GCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGAT                                                               <  SRR4302532.3237406/94‑1 (MQ=60)
                               GCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGAT                                                               <  SRR4302532.2347691/94‑1 (MQ=60)
                                CGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATA                                                              >  SRR4302532.2247126/1‑94 (MQ=60)
                                   CAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACAT                                                           <  SRR4302532.4588446/94‑1 (MQ=60)
                                   CAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACAT                                                           <  SRR4302532.3836614/94‑1 (MQ=60)
                                     GGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGGCGCGCACCTGATACATTT                                                         >  SRR4302532.1368733/1‑94 (MQ=60)
                                       CGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTA                                                       <  SRR4302532.4786824/94‑1 (MQ=60)
                                       CGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTA                                                       <  SRR4302532.1207626/94‑1 (MQ=60)
                                       CGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTA                                                       >  SRR4302532.4130072/1‑94 (MQ=60)
                                        GGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTAT                                                      <  SRR4302532.5801515/94‑1 (MQ=60)
                                        GGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTAT                                                      <  SRR4302532.454884/94‑1 (MQ=60)
                                        GGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTAT                                                      >  SRR4302532.4341002/1‑94 (MQ=60)
                                         GCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATC                                                     <  SRR4302532.2256941/94‑1 (MQ=60)
                                          gtccaccgGCGGGTCAATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAAGGTAGGAGATATCCTGCCGGCGCA‑CTGATAACTTTTATCGG                                                   <  SRR4302532.206175/86‑1 (MQ=38)
                                           GTCACCAGGGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATACTGGCCGCGCACCTGACACATTTTATCGG                                                   >  SRR4302532.5370289/1‑94 (MQ=60)
                                           GTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCCACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGG                                                   >  SRR4302532.5692327/1‑94 (MQ=60)
                                           GTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGG                                                   >  SRR4302532.5992332/1‑94 (MQ=60)
                                           GTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGG                                                   >  SRR4302532.4084115/1‑94 (MQ=60)
                                           GTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGG                                                   >  SRR4302532.1495655/1‑94 (MQ=60)
                                           GTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGG                                                   >  SRR4302532.1495654/1‑94 (MQ=60)
                                           GTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGG                                                   >  SRR4302532.4247200/1‑94 (MQ=60)
                                           GTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGG                                                   >  SRR4302532.4990698/1‑94 (MQ=60)
                                            TCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGT                                                  >  SRR4302532.5422620/1‑94 (MQ=60)
                                             CACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTG                                                 >  SRR4302532.1108392/1‑94 (MQ=60)
                                             CACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTG                                                 <  SRR4302532.6223249/94‑1 (MQ=60)
                                             CACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTG                                                 >  SRR4302532.4144152/1‑94 (MQ=60)
                                              ACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGA                                                >  SRR4302532.4050966/1‑94 (MQ=60)
                                              ACCAGCGGGGCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGA                                                >  SRR4302532.2357147/1‑94 (MQ=60)
                                               CCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGAC                                               <  SRR4302532.5963482/94‑1 (MQ=60)
                                               CCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGAC                                               >  SRR4302532.2387187/1‑94 (MQ=60)
                                                CAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACT                                              >  SRR4302532.430213/1‑94 (MQ=60)
                                                 AGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTT                                             <  SRR4302532.2267498/94‑1 (MQ=60)
                                                   CGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTG                                           >  SRR4302532.47440/1‑94 (MQ=60)
                                                   CGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTG                                           <  SRR4302532.4230831/94‑1 (MQ=60)
                                                    GGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGA                                          >  SRR4302532.2288423/1‑94 (MQ=60)
                                                    GGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGA                                          >  SRR4302532.2012424/1‑94 (MQ=60)
                                                     GGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAA                                         <  SRR4302532.21288/94‑1 (MQ=60)
                                                     GGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAA                                         <  SRR4302532.21289/94‑1 (MQ=60)
                                                       TCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACA                                       <  SRR4302532.3149679/94‑1 (MQ=60)
                                                        CGATAACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAG                                      >  SRR4302532.1538728/1‑94 (MQ=60)
                                                        CGATAACAATAATCCCCTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCTCCCCTGATACATTTTATCGGTGACTTTGAACAG                                      <  SRR4302532.1664698/94‑1 (MQ=60)
                                                          ATAACAATAATGCCTTTCTCGCTCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGC                                    <  SRR4302532.2799437/94‑1 (MQ=60)
                                                            AACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGGGATATCCTGGCCGCCCCCCTGATCCATTTTATCGGTGACTTTGAACAGGCCA                                  <  SRR4302532.4726277/94‑1 (MQ=60)
                                                            AACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCA                                  >  SRR4302532.1765442/1‑94 (MQ=60)
                                                            AACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCA                                  >  SRR4302532.5312086/1‑94 (MQ=60)
                                                             ACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAG                                 >  SRR4302532.4216057/1‑94 (MQ=60)
                                                             ACAATAATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAG                                 <  SRR4302532.1507565/94‑1 (MQ=60)
                                                                 TAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGGACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAAT                             <  SRR4302532.395361/94‑1 (MQ=60)
                                                                 TAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAAT                             <  SRR4302532.5951729/94‑1 (MQ=60)
                                                                 TAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAAT                             <  SRR4302532.2093009/94‑1 (MQ=60)
                                                                  AATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATA                            <  SRR4302532.5164234/94‑1 (MQ=60)
                                                                  AATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACAATTTATCGGTGACTTTGAACAGGCCAGAAATA                            >  SRR4302532.1082039/1‑94 (MQ=60)
                                                                   ATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATAC                           >  SRR4302532.1157316/1‑94 (MQ=60)
                                                                   ATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATAC                           <  SRR4302532.1525243/94‑1 (MQ=60)
                                                                   ATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATAC                           <  SRR4302532.3664354/94‑1 (MQ=60)
                                                                   ATGCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAAAAGGCCAAAAAAAC                           >  SRR4302532.3848202/1‑94 (MQ=60)
                                                                     GCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCG                         >  SRR4302532.1369143/1‑94 (MQ=60)
                                                                     GCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCG                         >  SRR4302532.618690/1‑94 (MQ=60)
                                                                     GCCTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCG                         <  SRR4302532.4432092/94‑1 (MQ=60)
                                                                       CTTTCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTT                       >  SRR4302532.4517871/1‑94 (MQ=60)
                                                                        TTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTG                      <  SRR4302532.4267721/94‑1 (MQ=60)
                                                                        TTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTG                      <  SRR4302532.2979291/94‑1 (MQ=60)
                                                                          TCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGAT                    >  SRR4302532.3817907/1‑94 (MQ=60)
                                                                          TCTCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTTAACAGGCCAGAAATACCGTTGAT                    >  SRR4302532.636841/1‑94 (MQ=60)
                                                                            TCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTT                  >  SRR4302532.5759984/1‑94 (MQ=60)
                                                                            TCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTT                  <  SRR4302532.1708487/94‑1 (MQ=60)
                                                                            TCGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTT                  >  SRR4302532.118929/1‑94 (MQ=60)
                                                                             CGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTG                 >  SRR4302532.2689786/1‑94 (MQ=60)
                                                                             CGCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTG                 <  SRR4302532.1111631/94‑1 (MQ=60)
                                                                              GCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGC                >  SRR4302532.3510941/1‑94 (MQ=60)
                                                                              GCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGC                >  SRR4302532.1305477/1‑94 (MQ=60)
                                                                              GCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGC                >  SRR4302532.2137127/1‑94 (MQ=60)
                                                                              GCCCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGC                >  SRR4302532.2137126/1‑94 (MQ=60)
                                                                                CCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGA              >  SRR4302532.2288855/1‑94 (MQ=60)
                                                                                CCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGA              >  SRR4302532.2771939/1‑94 (MQ=60)
                                                                                CCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGA              >  SRR4302532.2524091/1‑94 (MQ=60)
                                                                                CCTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGA              >  SRR4302532.3730798/1‑94 (MQ=60)
                                                                                 CTCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGAC             >  SRR4302532.4096054/1‑94 (MQ=60)
                                                                                  TCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACT            <  SRR4302532.1684816/94‑1 (MQ=60)
                                                                                  TCAACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACT            <  SRR4302532.5949181/94‑1 (MQ=60)
                                                                                     ACGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACTGAC         <  SRR4302532.4005676/94‑1 (MQ=60)
                                                                                      CGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACTGACG        <  SRR4302532.5130329/94‑1 (MQ=60)
                                                                                      CGAACGTAATGGTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAAGACCGTTGATTTGCGACTGACG        >  SRR4302532.4919038/1‑94 (MQ=60)
                                                                                      CGAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACTGACG        <  SRR4302532.4076767/94‑1 (MQ=60)
                                                                                       GAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACTGACGC       >  SRR4302532.1069349/1‑94 (MQ=60)
                                                                                       GAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACTGACGC       <  SRR4302532.517698/94‑1 (MQ=60)
                                                                                       GAACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACTGACGC       >  SRR4302532.2063906/1‑94 (MQ=60)
                                                                                        AACGCAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACTGACGCC      <  SRR4302532.2646673/94‑1 (MQ=60)
                                                                                          CGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACTGACGCCAC    >  SRR4302532.5393546/1‑94 (MQ=60)
                                                                                            TAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACTGACGCCACAG  >  SRR4302532.5889334/1‑94 (MQ=60)
                                                                                            CAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACTGACGCCACAG  >  SRR4302532.5655703/1‑94 (MQ=60)
                                                                                            CAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACTGACGCCACAG  <  SRR4302532.3980813/94‑1 (MQ=60)
                                                                                            |                                                                                             
ATGCTGGAAGTAAAGGTCAAGTGCGGCTTTTGCGGCAGGCGGCGTCACCAGCGGGTCGATAACAATAATGCCTTTCTCGCCCTCAACGAACGTAATGTTAGAGATATCCTGGCCGCGCACCTGATACATTTTATCGGTGACTTTGAACAGGCCAGAAATACCGTTGATTTGCGACTGACGCCACAG  >  NC_000913/4303676‑4303861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑