Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGAGACGCCTTGTATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCCGCAGCTTCC  >  NC_000913/4380334‑4380518
                                                                                           |                                                                                             
GGAGACGCCTTGTATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTG                                                                                             <  SRR4302532.4694446/94‑1 (MQ=60)
 GAGACGCCTTGTATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGA                                                                                            >  SRR4302532.3676412/1‑94 (MQ=60)
   GCCGCCTTGTCTCAGCCCGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGTATTCGCAGGCGGTGAAT                                                                                          <  SRR4302532.1479172/94‑1 (MQ=60)
   GCCGCCGTGTATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGCCACGTTTCGTTGGCCCCGGGCATCCGCAGGGGGTGAAT                                                                                          <  SRR4302532.1479171/94‑1 (MQ=60)
    ACGCCTTGTATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATC                                                                                         >  SRR4302532.5719383/1‑94 (MQ=60)
    ACGCCTTGTATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATC                                                                                         <  SRR4302532.198802/94‑1 (MQ=60)
    ACGCCTTGTATGAGCCAGGCGACGGGAACCGATATTCATTTGGTCCCGTTTGAGACACGGTTCGTTGGCCCCTGGCATTCGCAGGGGGTGAATC                                                                                         >  SRR4302532.5719384/1‑94 (MQ=60)
     CGCCTTCTATGAGCCAGGCGACGGTAACTGCTATTCATTTGGTCCCATTTGAGACACGTTTCCTTGGCCCCGGGCATTCGCAGGGGATGAATCT                                                                                        <  SRR4302532.559125/94‑1 (MQ=60)
       CCTTGTATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCT                                                                                      <  SRR4302532.5220208/94‑1 (MQ=60)
       CCTTGTATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCT                                                                                      >  SRR4302532.1536853/1‑94 (MQ=60)
        CTTGTATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTG                                                                                     <  SRR4302532.4263405/94‑1 (MQ=60)
        CTTGTATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGGGAATCTCTG                                                                                     >  SRR4302532.2192941/1‑94 (MQ=60)
        CTTGTATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTG                                                                                     >  SRR4302532.4620756/1‑94 (MQ=60)
          TGTATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGT                                                                                   <  SRR4302532.3530007/94‑1 (MQ=60)
            TATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTA                                                                                 >  SRR4302532.3093348/1‑94 (MQ=60)
             ATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAA                                                                                <  SRR4302532.5208675/94‑1 (MQ=60)
                AGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGA                                                                             <  SRR4302532.6292482/94‑1 (MQ=60)
                AGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGA                                                                             >  SRR4302532.4331678/1‑94 (MQ=60)
                 GCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGAC                                                                            <  SRR4302532.1898484/94‑1 (MQ=60)
                  CCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACATGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACC                                                                           <  SRR4302532.2354743/94‑1 (MQ=60)
                    AGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGATCAG                                                                         >  SRR4302532.4811105/1‑94 (MQ=60)
                    AGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAG                                                                         <  SRR4302532.2089950/94‑1 (MQ=60)
                    AGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAG                                                                         <  SRR4302532.3723955/94‑1 (MQ=60)
                     GGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGC                                                                        <  SRR4302532.3227448/94‑1 (MQ=60)
                       CGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCC                                                                      <  SRR4302532.28956/94‑1 (MQ=60)
                        GACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCG                                                                     >  SRR4302532.1386332/1‑94 (MQ=60)
                          CGGTAACCGATATTCATTGGGTCCTGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGA                                                                   <  SRR4302532.3910327/94‑1 (MQ=60)
                            GTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAAT                                                                 >  SRR4302532.5469015/1‑94 (MQ=60)
                            GTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCACCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAAT                                                                 >  SRR4302532.4985840/1‑94 (MQ=60)
                              AACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATAC                                                               <  SRR4302532.1896065/94‑1 (MQ=60)
                               ACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACC                                                              <  SRR4302532.1497821/94‑1 (MQ=60)
                               ACCGATATTCATTGGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACC                                                              <  SRR4302532.1122437/94‑1 (MQ=60)
                                CCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCA                                                             >  SRR4302532.821465/1‑94 (MQ=60)
                                CCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGcactctca                                                             >  SRR4302532.642402/1‑86 (MQ=60)
                                CCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCA                                                             >  SRR4302532.642405/1‑94 (MQ=60)
                                CCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCA                                                             >  SRR4302532.1250250/1‑94 (MQ=60)
                                 CGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCAT                                                            >  SRR4302532.659557/1‑94 (MQ=60)
                                 CGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCAT                                                            >  SRR4302532.77036/1‑94 (MQ=60)
                                 CGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCAT                                                            <  SRR4302532.131453/94‑1 (MQ=60)
                                 CGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCAT                                                            >  SRR4302532.5373539/1‑94 (MQ=60)
                                  GATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATA                                                           >  SRR4302532.4275217/1‑94 (MQ=60)
                                    TATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGCCCATCCCGGAATACCATATG                                                         <  SRR4302532.1600947/94‑1 (MQ=60)
                                    TATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATG                                                         >  SRR4302532.2923312/1‑94 (MQ=60)
                                    TATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATG                                                         <  SRR4302532.4275463/94‑1 (MQ=60)
                                     ATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGA                                                        >  SRR4302532.6258010/1‑94 (MQ=60)
                                     ATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGA                                                        <  SRR4302532.6289681/94‑1 (MQ=60)
                                       TCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAA                                                      <  SRR4302532.1938734/94‑1 (MQ=60)
                                        CATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAAC                                                     >  SRR4302532.6146248/1‑94 (MQ=60)
                                        CATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAAC                                                     <  SRR4302532.4442083/94‑1 (MQ=60)
                                        CATTTGGTCCCGTTTGAGACACGTTTCGTTGGACCCAGGCATTCGAAAGGGATGAATCTATGGATAATGACCAGCCCGGAATACCATATtaaag                                                     >  SRR4302532.900033/1‑89 (MQ=60)
                                         ATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACG                                                    >  SRR4302532.1506135/1‑94 (MQ=60)
                                         ATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACG                                                    <  SRR4302532.5009744/94‑1 (MQ=60)
                                         ATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACG                                                    <  SRR4302532.4084181/94‑1 (MQ=60)
                                         ATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACG                                                    <  SRR4302532.939505/94‑1 (MQ=60)
                                         ATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACG                                                    >  SRR4302532.2008615/1‑94 (MQ=60)
                                           TTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCC                                                  >  SRR4302532.1446592/1‑94 (MQ=60)
                                            TGGTCCCGTTTGAGCCACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCT                                                 <  SRR4302532.2811371/94‑1 (MQ=60)
                                            TGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCT                                                 >  SRR4302532.1772930/1‑94 (MQ=60)
                                             GGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTG                                                >  SRR4302532.1581626/1‑94 (MQ=60)
                                              GTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGC                                               >  SRR4302532.262935/1‑94 (MQ=60)
                                               TCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATCCCAAATGAAACGCCTGCT                                              <  SRR4302532.163596/94‑1 (MQ=60)
                                               TCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCT                                              <  SRR4302532.1091338/94‑1 (MQ=60)
                                               TCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCT                                              <  SRR4302532.4227050/94‑1 (MQ=60)
                                               TCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCT                                              >  SRR4302532.3339628/1‑94 (MQ=60)
                                                CCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTG                                             <  SRR4302532.5888885/94‑1 (MQ=60)
                                                 CCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGG                                            >  SRR4302532.5325942/1‑94 (MQ=60)
                                                 CCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGG                                            <  SRR4302532.5259491/94‑1 (MQ=60)
                                                 CCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGG                                            <  SRR4302532.1114960/94‑1 (MQ=60)
                                                  CGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGT                                           >  SRR4302532.4398148/1‑94 (MQ=60)
                                                  CGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGT                                           >  SRR4302532.2906963/1‑94 (MQ=60)
                                                  CGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGT                                           >  SRR4302532.3469623/1‑94 (MQ=60)
                                                  CGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGT                                           >  SRR4302532.3351244/1‑94 (MQ=60)
                                                   GTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTT                                          >  SRR4302532.368962/1‑94 (MQ=60)
                                                     TTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGC                                        <  SRR4302532.5011786/94‑1 (MQ=60)
                                                       GAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCG                                      >  SRR4302532.4650175/1‑94 (MQ=60)
                                                       GAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCG                                      >  SRR4302532.6109845/1‑94 (MQ=60)
                                                        AGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGG                                     <  SRR4302532.961538/94‑1 (MQ=60)
                                                        AGACACGTTTCGTTGGACCCGGGCATTCGCAGGGGGGGAATCTCTGGTTAATGACCAGCCCGGAATACGATATGAAACGCCTGCTGGTTGACGG                                     >  SRR4302532.4376862/1‑94 (MQ=60)
                                                          ACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTT                                   >  SRR4302532.4794092/1‑94 (MQ=60)
                                                          ACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTT                                   >  SRR4302532.2885862/1‑94 (MQ=60)
                                                           CACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTG                                  <  SRR4302532.796164/94‑1 (MQ=60)
                                                            ACGTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGT                                 <  SRR4302532.4443118/94‑1 (MQ=60)
                                                              GTTTCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGG                               >  SRR4302532.3247035/1‑94 (MQ=60)
                                                              GTTTCGTCGGCCCCGGGCATACGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGG                               >  SRR4302532.1212605/1‑94 (MQ=60)
                                                                 TCGTTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCC                            <  SRR4302532.112782/94‑1 (MQ=60)
                                                                 TCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGATTACCCTATGAAACCCCTCACGGTTGCCGGTTGTGGGCC                            >  SRR4302532.1582965/1‑94 (MQ=60)
                                                                 TCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCC                            <  SRR4302532.433574/94‑1 (MQ=60)
                                                                   GTTGGCCCCGGGCATTCGCAGGGGGCGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGGTGCCGGTTGTGGGGCGG                          >  SRR4302532.23000/1‑94 (MQ=60)
                                                                    TTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGT                         <  SRR4302532.2366944/94‑1 (MQ=60)
                                                                    TTGGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGT                         <  SRR4302532.6125634/94‑1 (MQ=60)
                                                                      GGCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTAT                       >  SRR4302532.6083250/1‑94 (MQ=60)
                                                                       GCCCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATT                      >  SRR4302532.1416550/1‑94 (MQ=60)
                                                                         CCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCC                    >  SRR4302532.645701/1‑94 (MQ=60)
                                                                         CCCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCC                    <  SRR4302532.6115961/94‑1 (MQ=60)
                                                                         CCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCC                    >  SRR4302532.5723427/1‑94 (MQ=60)
                                                                         CCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCC                    >  SRR4302532.758157/1‑94 (MQ=60)
                                                                         CCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCC                    <  SRR4302532.2622976/94‑1 (MQ=60)
                                                                          CCGGGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCA                   >  SRR4302532.4194461/1‑94 (MQ=60)
                                                                          CCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCA                   <  SRR4302532.5400245/94‑1 (MQ=60)
                                                                            GGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGC                 >  SRR4302532.2677769/1‑94 (MQ=60)
                                                                             GGCATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCT                <  SRR4302532.5030683/94‑1 (MQ=60)
                                                                             GGCACTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGCTTCTGGGCCGGTATTCCAGCT                <  SRR4302532.2761560/94‑1 (MQ=60)
                                                                               CATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGT              <  SRR4302532.5069069/94‑1 (MQ=60)
                                                                               CATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGT              >  SRR4302532.5917162/1‑94 (MQ=60)
                                                                                ATTCGCAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTG             >  SRR4302532.5883066/1‑94 (MQ=60)
                                                                                ATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTG             <  SRR4302532.5104967/94‑1 (MQ=60)
                                                                                  TCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCC           <  SRR4302532.857125/94‑1 (MQ=60)
                                                                                    GCAGGGGGTGAATCTCTGGTTAATGACCAGTCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCCGC         >  SRR4302532.6270867/1‑94 (MQ=60)
                                                                                     CAGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGGCGGTATTTCAGCTGTGCCGCG        >  SRR4302532.5774310/1‑94 (MQ=60)
                                                                                      AGGGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCCGCAG       <  SRR4302532.3240740/94‑1 (MQ=60)
                                                                                      AGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCCGCAG       >  SRR4302532.1894800/1‑94 (MQ=60)
                                                                                      AGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCCGCAG       >  SRR4302532.667837/1‑94 (MQ=60)
                                                                                      AGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCCGCAG       >  SRR4302532.5954388/1‑94 (MQ=60)
                                                                                        GGGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCCGCAGCT     <  SRR4302532.3073757/94‑1 (MQ=60)
                                                                                         GGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCCGCAGCTT    <  SRR4302532.1007129/94‑1 (MQ=60)
                                                                                         GGGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCCGCAGCTT    <  SRR4302532.1007128/94‑1 (MQ=60)
                                                                                         GGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCCGCAGCTT    >  SRR4302532.34/1‑94 (MQ=60)
                                                                                          GGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCCGCAGCTTC   >  SRR4302532.2134315/1‑94 (MQ=60)
                                                                                          GGTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCCGCAGCTTC   >  SRR4302532.1396589/1‑94 (MQ=60)
                                                                                          GATAAATCTCTGGTTAATGACCAGACCGGAATTCCATATGAAACGCCTTCTGGTTGCCGGTTGTGGGCCTGTATTCCAGCTGTGCCGCAGCTTC   <  SRR4302532.4806174/94‑1 (MQ=60)
                                                                                           GTGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCCGCAGCTTCC  <  SRR4302532.5240560/94‑1 (MQ=60)
                                                                                           |                                                                                             
GGAGACGCCTTGTATGAGCCAGGCGACGGTAACCGATATTCATTTGGTCCCGTTTGAGACACGTTTCGTTGGCCCCGGGCATTCGCAGGGGATGAATCTCTGGTTAATGACCAGCCCGGAATACCATATGAAACGCCTGCTGGTTGCCGGTTGTGGGCCGGTATTCCAGCTGTGCCGCAGCTTCC  >  NC_000913/4380334‑4380518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑