Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,056,041	A→G	E186E (GAA→GAG)	torT →	TorT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,056,041	0	A	G	100.0%	922.2 / NA	253	E186E (GAA→GAG)	torT	TorT
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (125/128); total (125/128)

Only 100 of 259 total aligned reads displayed.

ATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTT  >  NC_000913/1055951‑1056130

atatCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAggg                                                                                         <  1:2158323/93‑1 (MQ=255)

   tCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGttt                                                                                      >  1:3316931/1‑93 (MQ=255)

   tCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGttt                                                                                      <  1:3753630/93‑1 (MQ=255)

   tCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGttt                                                                                      <  1:1978568/93‑1 (MQ=255)

   tCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGttt                                                                                      <  2:3569431/93‑1 (MQ=255)

   tCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGttt                                                                                      >  2:5483446/1‑93 (MQ=255)

   tCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGttt                                                                                      >  2:6297445/1‑93 (MQ=255)

     tGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTc                                                                                    <  2:1263830/93‑1 (MQ=255)

        tGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTcgcg                                                                                 <  2:6157947/93‑1 (MQ=255)

         gCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCgcgc                                                                                >  2:6566322/1‑93 (MQ=255)

          cAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCa                                                                               <  1:4592586/93‑1 (MQ=255)

          cAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCa                                                                               >  2:5087898/1‑93 (MQ=255)

           aaTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAg                                                                              >  1:5756751/1‑93 (MQ=255)

            aTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGc                                                                             <  1:4952695/93‑1 (MQ=255)

            aTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGc                                                                             >  2:2358287/1‑93 (MQ=255)

            aTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGc                                                                             <  1:3884545/93‑1 (MQ=255)

              gggCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCa                                                                           <  2:6578302/93‑1 (MQ=255)

              gggCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGATTTCGCGCAGCCa                                                                           >  1:3694840/1‑93 (MQ=255)

               ggCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCAt                                                                          >  1:3997068/1‑93 (MQ=255)

                 cgcACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTg                                                                        >  1:6257587/1‑93 (MQ=255)

                    aCGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCg                                                                     >  1:2664855/1‑93 (MQ=255)

                      ggTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGa                                                                   >  1:6559616/1‑93 (MQ=255)

                       gTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGaa                                                                  <  2:5842918/93‑1 (MQ=255)

                        tAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAg                                                                 <  1:5787268/93‑1 (MQ=255)

                         aaaCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGc                                                                >  2:3015073/1‑93 (MQ=255)

                         aaaCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGc                                                                >  2:4330010/1‑93 (MQ=255)

                          aaCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGcc                                                               <  1:3101753/93‑1 (MQ=255)

                          aaCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGcc                                                               >  1:5004456/1‑93 (MQ=255)

                          aaCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGcc                                                               >  1:1189371/1‑93 (MQ=255)

                           aCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGccc                                                              >  1:1926139/1‑93 (MQ=255)

                            ccACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCg                                                             <  2:4120124/93‑1 (MQ=255)

                             cACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCgg                                                            >  1:6126246/1‑93 (MQ=255)

                             cACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCgg                                                            >  1:3412699/1‑93 (MQ=255)

                             cACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCgg                                                            <  2:2631760/93‑1 (MQ=255)

                              aCTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGt                                                           <  2:1618875/93‑1 (MQ=255)

                              aCTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGt                                                           <  2:4416022/93‑1 (MQ=255)

                              aCTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTGCGCGCAGCCATTGCCGGAAGCCCGGt                                                           >  1:5359321/1‑93 (MQ=255)

                              aCTCAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGt                                                           <  1:5924977/93‑1 (MQ=255)

                               cTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTg                                                          <  2:533501/93‑1 (MQ=255)

                                tGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCCGTAAGGAGATGGCCGAGGGTTTTCGCGGCACCATTGCCCGAAGCCCggcgg                                                         >  1:172582/1‑90 (MQ=255)

                                 gAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCg                                                        >  2:2647751/1‑93 (MQ=255)

                                 gAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCg                                                        >  2:4480382/1‑93 (MQ=255)

                                  aaTGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGt                                                       >  2:709818/1‑93 (MQ=255)

                                  aaTGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTCGCGCAGCCATTGCCGGAAGCCCGGCGCGt                                                       >  1:4304294/1‑93 (MQ=255)

                                    tgtgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAt                                                     <  2:1343143/93‑1 (MQ=255)

                                      tgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttg                                                   >  2:4940998/1‑93 (MQ=255)

                                       gCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgt                                                  >  2:5400706/1‑93 (MQ=255)

                                        cTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgtt                                                 <  2:3397809/93‑1 (MQ=255)

                                             gATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGatat                                            >  2:531010/1‑93 (MQ=255)

                                              aTGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATAtt                                           <  1:1443647/93‑1 (MQ=255)

                                               tGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTg                                          <  2:5236431/93‑1 (MQ=255)

                                               tGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTg                                          <  2:2277042/93‑1 (MQ=255)

                                                gCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTgc                                         <  1:6332705/93‑1 (MQ=255)

                                                gCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTgc                                         <  2:5590961/93‑1 (MQ=255)

                                                   cGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCt                                      >  1:4111787/1‑93 (MQ=255)

                                                   cGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGGTGATATTGCGCt                                      >  1:1891847/1‑93 (MQ=255)

                                                    ggACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCtt                                     >  1:4429365/1‑93 (MQ=255)

                                                    ggACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCtt                                     <  2:3155385/93‑1 (MQ=255)

                                                    ggACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCtt                                     >  2:2179310/1‑93 (MQ=255)

                                                     gACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTg                                    >  1:1498779/1‑93 (MQ=255)

                                                      aCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTgg                                   <  1:3071772/93‑1 (MQ=255)

                                                       cccGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGt                                  >  1:4150635/1‑93 (MQ=255)

                                                        ccGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTg                                 <  2:281473/93‑1 (MQ=255)

                                                         cGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGa                                <  2:3271395/93‑1 (MQ=255)

                                                         cGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGa                                >  1:3602568/1‑93 (MQ=255)

                                                         cGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGa                                <  1:3433946/93‑1 (MQ=255)

                                                         cGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGa                                >  2:3746165/1‑93 (MQ=255)

                                                          gATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGAt                               >  2:2096739/1‑93 (MQ=255)

                                                          gATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGAt                               <  1:9474/93‑1 (MQ=255)

                                                            tAACGCGGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATaa                             <  1:6574432/93‑1 (MQ=255)

                                                              aCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACg                           <  1:733669/93‑1 (MQ=255)

                                                              aCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACg                           >  1:2273773/1‑93 (MQ=255)

                                                              aCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGAGCTTGGTGATCACg                           >  1:2813428/1‑93 (MQ=255)

                                                               cGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGa                          <  2:4624485/93‑1 (MQ=255)

                                                                  cGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGatat                       <  2:5552350/93‑1 (MQ=255)

                                                                  cGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGatat                       <  1:5264345/93‑1 (MQ=255)

                                                                   gggggCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATAtt                      <  2:63990/93‑1 (MQ=255)

                                                                   gggggCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATAtt                      >  1:489033/1‑93 (MQ=255)

                                                                        gaGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAAt                 <  1:82525/92‑1 (MQ=255)

                                                                        cAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAAt                 <  1:1756418/93‑1 (MQ=255)

                                                                         aGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATc                >  2:1867744/1‑93 (MQ=255)

                                                                         aGTAAGGAGATGGTCGAGGGGTTTCGCGCCGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATc                >  1:715889/1‑93 (MQ=255)

                                                                          gTAAGGAGATGGTCGAGGGATTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATcc               >  1:6347500/1‑93 (MQ=255)

                                                                           tAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCa              <  2:3621089/93‑1 (MQ=255)

                                                                           tAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCa              >  1:1306502/1‑93 (MQ=255)

                                                                            aaGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAg             >  1:249974/1‑93 (MQ=255)

                                                                            aaGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAg             <  1:2613420/93‑1 (MQ=255)

                                                                            aaGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAg             <  1:3161236/93‑1 (MQ=255)

                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            >  2:4883937/1‑93 (MQ=255)

                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            <  1:2447134/93‑1 (MQ=255)

                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            <  2:1016067/93‑1 (MQ=255)

                                                                              ggAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCg           >  2:3925747/1‑93 (MQ=255)

                                                                                agaTGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTa         <  2:2919363/93‑1 (MQ=255)

                                                                                 gaTGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTaa        <  2:1738505/93‑1 (MQ=255)

                                                                                  aTGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAc       <  2:5909959/93‑1 (MQ=255)

                                                                                  aTGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAc       <  1:518274/93‑1 (MQ=255)

                                                                                   tGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAcc      >  1:5114791/1‑93 (MQ=255)

                                                                                      tCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGt   >  1:2322653/1‑93 (MQ=255)

                                                                                       cGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGtt  >  1:4252979/1‑93 (MQ=255)

                                                                                       cGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGtt  <  2:1165522/93‑1 (MQ=255)

ATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTT  >  NC_000913/1055951‑1056130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGC  >  NC_000913/1055948‑1056132

GCGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAG                                                                                             >  SRR4302547.3873434/1‑94 (MQ=60)

GCGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAG                                                                                             <  SRR4302547.1522859/94‑1 (MQ=60)

 CGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGG                                                                                            >  SRR4302547.5555814/1‑94 (MQ=60)

 CGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGG                                                                                            <  SRR4302547.1579890/94‑1 (MQ=60)

  GATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGG                                                                                           >  SRR4302547.2075927/1‑94 (MQ=60)

   ATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGT                                                                                          <  SRR4302547.2201457/94‑1 (MQ=60)

    TATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTT                                                                                         >  SRR4302547.5890035/1‑94 (MQ=60)

     ATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTT                                                                                        <  SRR4302547.1936374/94‑1 (MQ=60)

     ATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTT                                                                                        >  SRR4302547.3383860/1‑94 (MQ=60)

      TCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTT                                                                                       <  SRR4302547.3830225/94‑1 (MQ=60)

      TCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTT                                                                                       <  SRR4302547.2017847/94‑1 (MQ=60)

       CTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTC                                                                                      <  SRR4302547.6387737/94‑1 (MQ=60)

       CTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTC                                                                                      >  SRR4302547.1827562/1‑94 (MQ=60)

         GGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGC                                                                                    >  SRR4302547.3769062/1‑94 (MQ=60)

         GGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGC                                                                                    <  SRR4302547.354453/94‑1 (MQ=60)

           TGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGC                                                                                  >  SRR4302547.1306400/1‑94 (MQ=60)

            GCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCA                                                                                 <  SRR4302547.1837808/94‑1 (MQ=60)

             CAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTTGCGCAG                                                                                >  SRR4302547.3158350/1‑94 (MQ=60)

             CAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAG                                                                                <  SRR4302547.4687619/94‑1 (MQ=60)

             CAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAG                                                                                >  SRR4302547.5260637/1‑94 (MQ=60)

             CAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAG                                                                                >  SRR4302547.5875771/1‑94 (MQ=60)

              AATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGC                                                                               >  SRR4302547.733437/1‑94 (MQ=60)

               ATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCC                                                                              <  SRR4302547.3963563/94‑1 (MQ=60)

               ATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCC                                                                              <  SRR4302547.1930144/94‑1 (MQ=60)

               ATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCC                                                                              <  SRR4302547.5055230/94‑1 (MQ=60)

                TGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGATTTCGCGCAGCCA                                                                             >  SRR4302547.3770264/1‑94 (MQ=60)

                 GGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCAT                                                                            >  SRR4302547.4078320/1‑94 (MQ=60)

                   GCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTG                                                                          >  SRR4302547.6387569/1‑94 (MQ=60)

                   GCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTG                                                                          <  SRR4302547.5359635/94‑1 (MQ=60)

                    CGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGC                                                                         >  SRR4302547.777413/1‑94 (MQ=60)

                    CGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGC                                                                         >  SRR4302547.4962881/1‑94 (MQ=60)

                    CGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGC                                                                         >  SRR4302547.5344226/1‑94 (MQ=60)

                    CGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGC                                                                         <  SRR4302547.3276707/94‑1 (MQ=60)

                     GCACGGTAAACCGCTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCC                                                                        >  SRR4302547.4871031/1‑94 (MQ=60)

                      CACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCG                                                                       >  SRR4302547.2718403/1‑94 (MQ=60)

                       ACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGG                                                                      >  SRR4302547.2425005/1‑94 (MQ=60)

                        CGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGA                                                                     <  SRR4302547.6696234/94‑1 (MQ=60)

                        CGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGA                                                                     >  SRR4302547.5949874/1‑94 (MQ=60)

                        CGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGA                                                                     >  SRR4302547.6696206/1‑94 (MQ=60)

                         GGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAA                                                                    >  SRR4302547.4283806/1‑94 (MQ=60)

                         GGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAA                                                                    >  SRR4302547.306693/1‑94 (MQ=60)

                          GTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCGGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAG                                                                   <  SRR4302547.4190541/94‑1 (MQ=60)

                           TAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGC                                                                  <  SRR4302547.5906974/94‑1 (MQ=60)

                            AAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCC                                                                 >  SRR4302547.4457453/1‑94 (MQ=60)

                            AAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCC                                                                 >  SRR4302547.1213383/1‑94 (MQ=60)

                            AAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCC                                                                 >  SRR4302547.5107925/1‑94 (MQ=60)

                             AGCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCC                                                                <  SRR4302547.2424674/94‑1 (MQ=60)

                             AACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCC                                                                <  SRR4302547.3163178/94‑1 (MQ=60)

                             AACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCC                                                                <  SRR4302547.3496967/94‑1 (MQ=60)

                             AACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCC                                                                >  SRR4302547.5458320/1‑94 (MQ=60)

                             AACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCC                                                                >  SRR4302547.1964298/1‑94 (MQ=60)

                               CCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGG                                                              >  SRR4302547.6253328/1‑94 (MQ=60)

                               CCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGG                                                              <  SRR4302547.259492/94‑1 (MQ=60)

                               CCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGG                                                              >  SRR4302547.3482186/1‑94 (MQ=60)

                                CACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTGCGCGCAGCCATTGCCGGAAGCCCGGT                                                             >  SRR4302547.5469868/1‑94 (MQ=60)

                                CACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTCGCGCAGCCATTGCCGGAACCCCGGG                                                             >  SRR4302547.347162/1‑94 (MQ=60)

                                 ACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTG                                                            >  SRR4302547.3998354/1‑94 (MQ=60)

                                 ACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTG                                                            <  SRR4302547.3049217/94‑1 (MQ=60)

                                 ACTCAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTG                                                            <  SRR4302547.6047789/94‑1 (MQ=60)

                                  CTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCCGTAAGGAGATGGCCGAGGGTTTTCGCGGCACCATTGCCCGAAGCCCGGcgg                                                           >  SRR4302547.175747/1‑91 (MQ=60)

                                  CTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGC                                                           <  SRR4302547.5002183/94‑1 (MQ=60)

                                  CTGAATGTGCTGTTGATGCCCGGAACCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGC                                                           <  SRR4302547.1463495/94‑1 (MQ=60)

                                   TGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCG                                                          <  SRR4302547.4219357/94‑1 (MQ=60)

                                    GAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGT                                                         <  SRR4302547.2339949/94‑1 (MQ=60)

                                    GAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGT                                                         >  SRR4302547.2858521/1‑94 (MQ=60)

                                    GAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTCGCGCAGCCATTGCCGGAAGCCCGGCGCGT                                                         >  SRR4302547.4392830/1‑94 (MQ=60)

                                       TGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATT                                                      <  SRR4302547.5199171/94‑1 (MQ=60)

                                       TGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATT                                                      <  SRR4302547.2538609/94‑1 (MQ=60)

                                         TGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGGCCGGTGCGTATTGT                                                    >  SRR4302547.903814/1‑94 (MQ=60)

                                          GCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTT                                                   <  SRR4302547.5093653/94‑1 (MQ=60)

                                          GCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTT                                                   <  SRR4302547.5058073/94‑1 (MQ=60)

                                           CTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTG                                                  <  SRR4302547.3596301/94‑1 (MQ=60)

                                            TGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGA                                                 >  SRR4302547.6722677/1‑94 (MQ=60)

                                              TTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATA                                               <  SRR4302547.3183602/94‑1 (MQ=60)

                                                GATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATT                                             >  SRR4302547.1500327/1‑94 (MQ=60)

                                                 ATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTG                                            <  SRR4302547.1472519/94‑1 (MQ=60)

                                                 ATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTG                                            <  SRR4302547.4343054/94‑1 (MQ=60)

                                                   GCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCG                                          <  SRR4302547.6464565/94‑1 (MQ=60)

                                                   GCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCG                                          <  SRR4302547.3730466/94‑1 (MQ=60)

                                                   GCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGACGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCG                                          <  SRR4302547.6741156/94‑1 (MQ=60)

                                                     CCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCT                                        >  SRR4302547.4195360/1‑94 (MQ=60)

                                                     CCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGGTGATATTGCGCT                                        >  SRR4302547.1929234/1‑94 (MQ=60)

                                                      CGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTT                                       <  SRR4302547.6690975/94‑1 (MQ=60)

                                                      CGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTT                                       >  SRR4302547.4520891/1‑94 (MQ=60)

                                                       GGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTG                                      <  SRR4302547.5232444/94‑1 (MQ=60)

                                                       GGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTG                                      >  SRR4302547.4604735/1‑94 (MQ=60)

                                                       GGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTG                                      >  SRR4302547.6196170/1‑94 (MQ=60)

                                                       GGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTG                                      >  SRR4302547.6343008/1‑94 (MQ=60)

                                                       GGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTG                                      >  SRR4302547.1528677/1‑94 (MQ=60)

                                                        GACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGG                                     >  SRR4302547.1975501/1‑94 (MQ=60)

                                                         ACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGT                                    <  SRR4302547.4629841/94‑1 (MQ=60)

                                                         ACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGT                                    >  SRR4302547.4235170/1‑94 (MQ=60)

                                                         ACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGT                                    <  SRR4302547.3132795/94‑1 (MQ=60)

                                                          CCCGATATCGCCGGGTGCAGTAAGGAGATGGCCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTTATATTGCGCTTGGTG                                   <  SRR4302547.3262500/94‑1 (MQ=60)

                                                          CCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTG                                   >  SRR4302547.738278/1‑94 (MQ=60)

                                                          CCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTG                                   >  SRR4302547.958503/1‑94 (MQ=60)

                                                           CCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGA                                  >  SRR4302547.3676034/1‑94 (MQ=60)

                                                            CGATAACGCGGCGGTCAATAAGGAGATGGTCGAGGGTTTTCGCGCAGTCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGAT                                 <  SRR4302547.811482/94‑1 (MQ=60)

                                                            CGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGAT                                 <  SRR4302547.3503934/94‑1 (MQ=60)

                                                             GATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATA                                <  SRR4302547.9649/94‑1 (MQ=60)

                                                               TAACGCGGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAC                              <  SRR4302547.6711306/94‑1 (MQ=60)

                                                               TAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAC                              >  SRR4302547.434942/1‑94 (MQ=60)

                                                                AACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACG                             >  SRR4302547.2319761/1‑94 (MQ=60)

                                                                AACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACG                             >  SRR4302547.593890/1‑94 (MQ=60)

                                                                AACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAAG                             >  SRR4302547.5507723/1‑94 (MQ=60)

                                                                AACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGAGCTTGGTGATCACG                             >  SRR4302547.2869715/1‑94 (MQ=60)

                                                                 ACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGA                            <  SRR4302547.747374/94‑1 (MQ=60)

                                                                    CCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATAT                         >  SRR4302547.1790571/1‑94 (MQ=60)

                                                                     CGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATT                        <  SRR4302547.5372750/94‑1 (MQ=60)

                                                                     CGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATT                        >  SRR4302547.497974/1‑94 (MQ=60)

                                                                       GGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGA                      <  SRR4302547.2712411/94‑1 (MQ=60)

                                                                       GGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGA                      >  SRR4302547.2621245/1‑94 (MQ=60)

                                                                         GGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAA                    >  SRR4302547.5732269/1‑94 (MQ=60)

                                                                         GGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAA                    >  SRR4302547.6500310/1‑94 (MQ=60)

                                                                          GCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAAT                   <  SRR4302547.6383636/94‑1 (MQ=60)

                                                                           GAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATC                  <  SRR4302547.84057/94‑1 (MQ=60)

                                                                           CAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATC                  >  SRR4302547.6440675/1‑94 (MQ=60)

                                                                           CAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATC                  <  SRR4302547.1791192/94‑1 (MQ=60)

                                                                           CAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATC                  >  SRR4302547.6470968/1‑94 (MQ=60)

                                                                           CAGTAAGGAGATGGTCGAGGGGTTTCGCGCCGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATC                  >  SRR4302547.729150/1‑94 (MQ=60)

                                                                            AGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCC                 >  SRR4302547.273909/1‑94 (MQ=60)

                                                                            AGTAAGGAGATGGTCGAGGGATTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCC                 >  SRR4302547.6479740/1‑94 (MQ=60)

                                                                             GTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCA                >  SRR4302547.1332776/1‑94 (MQ=60)

                                                                             GTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCA                <  SRR4302547.4212259/94‑1 (MQ=60)

                                                                             GTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCA                <  SRR4302547.212762/94‑1 (MQ=60)

                                                                              TAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAG               >  SRR4302547.254655/1‑94 (MQ=60)

                                                                              TAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAG               <  SRR4302547.316008/94‑1 (MQ=60)

                                                                              TAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAG               <  SRR4302547.3459472/94‑1 (MQ=60)

                                                                               AAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGTTATTGCGCTTGGTGATAACGATATTGAAATCCAGC              <  SRR4302547.1584192/94‑1 (MQ=60)

                                                                               AAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGC              <  SRR4302547.3224128/94‑1 (MQ=60)

                                                                               AAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGC              <  SRR4302547.2666088/94‑1 (MQ=60)

                                                                               AAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGC              <  SRR4302547.4125016/94‑1 (MQ=60)

                                                                                AGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCG             <  SRR4302547.2496602/94‑1 (MQ=60)

                                                                                   AGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAA          >  SRR4302547.394783/1‑94 (MQ=60)

                                                                                    GATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAC         >  SRR4302547.225435/1‑94 (MQ=60)

                                                                                    GATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAC         >  SRR4302547.2336499/1‑94 (MQ=60)

                                                                                     ATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACC        >  SRR4302547.5220189/1‑94 (MQ=60)

                                                                                     ATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACC        <  SRR4302547.3918084/94‑1 (MQ=60)

                                                                                     ATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACC        <  SRR4302547.527669/94‑1 (MQ=60)

                                                                                      TGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCT       >  SRR4302547.1643524/1‑94 (MQ=60)

                                                                                       GGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTA      <  SRR4302547.3771814/94‑1 (MQ=60)

                                                                                        GTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGT     >  SRR4302547.2369734/1‑94 (MQ=60)

                                                                                         TCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTT    >  SRR4302547.4339999/1‑94 (MQ=60)

                                                                                         TCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTT    <  SRR4302547.1407481/94‑1 (MQ=60)

                                                                                           GAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGC  >  SRR4302547.723842/1‑94 (MQ=60)

GCGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGC  >  NC_000913/1055948‑1056132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`