Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,188,890 |
A→G |
L37P (CTG→CCG) |
phoQ ← |
PhoQ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,188,890 | 0 | A | G | 85.0%
| 544.8
/ 91.2
| 220 | L37P (CTG→CCG) | phoQ | PhoQ |
| Reads supporting (aligned to +/- strand): ref base A (12/21); new base G (112/75); total (124/96) |
| Fisher's exact test for biased strand distribution p-value = 1.38e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.36e-01 |
Only 100 of 232 total aligned reads displayed.
TGTTTTCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAA > NC_000913/1188798‑1188979
|
tGTTTTCCCCCTTCGCAAGGGTAAAGAACAGGTTGGCCTCCCCCCGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCa < 2:2374032/93‑1 (MQ=255)
gTTTTCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAg < 1:5533109/93‑1 (MQ=255)
tttCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGgcg < 1:5163133/93‑1 (MQ=255)
ttCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGgcgc < 1:3821834/93‑1 (MQ=255)
cccACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGa > 1:2879576/1‑93 (MQ=255)
aCTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCa > 2:4321765/1‑93 (MQ=255)
ttCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCAtt > 1:4539311/1‑93 (MQ=255)
tCGCAAGGTTATAGAACAGATTGCTCTCCCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTc < 1:1979425/93‑1 (MQ=255)
tCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTc < 1:5427081/93‑1 (MQ=255)
tCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTc > 1:4234417/1‑93 (MQ=255)
cGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTcc > 1:788520/1‑93 (MQ=255)
cGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTcc > 1:433014/1‑93 (MQ=255)
cGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTcc > 1:229954/1‑93 (MQ=255)
gCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCg > 1:5833613/1‑93 (MQ=255)
gCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCg > 1:3047277/1‑93 (MQ=255)
cAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGt < 1:1335142/93‑1 (MQ=255)
cAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGt > 2:3164588/1‑93 (MQ=255)
cAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGt > 2:4824273/1‑93 (MQ=255)
cAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACAATTCCGt < 1:6538147/93‑1 (MQ=255)
aaGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTa < 2:6280402/93‑1 (MQ=255)
aaGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTa < 1:4740055/93‑1 (MQ=255)
aGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAg > 2:5205010/1‑93 (MQ=255)
gggTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAgg > 2:5344812/1‑93 (MQ=255)
ggTATAGAAAAGATTGCGCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGc < 2:5166576/93‑1 (MQ=255)
gTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCa < 1:5791673/93‑1 (MQ=255)
gTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGCCa > 2:2016719/1‑93 (MQ=255)
gTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCa < 1:4904173/93‑1 (MQ=255)
tataGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCaa < 2:682793/93‑1 (MQ=255)
gAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGa > 1:1807168/1‑93 (MQ=255)
aCAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGaaa < 1:6629315/93‑1 (MQ=255)
aTTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCAc > 2:271090/1‑93 (MQ=255)
ctctCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGt > 1:1450754/1‑93 (MQ=255)
tctcGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGta > 1:2662469/1‑93 (MQ=255)
tcGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGtact > 2:5899554/1‑93 (MQ=255)
gCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGtactac < 2:4516983/93‑1 (MQ=255)
ccACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTAcc < 1:1053170/93‑1 (MQ=255)
cACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCg > 2:5882779/1‑93 (MQ=255)
aCGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGc < 2:6313726/93‑1 (MQ=255)
aCGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGc < 1:657258/93‑1 (MQ=255)
cGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCt > 1:1679211/1‑93 (MQ=255)
cGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCt > 1:3348453/1‑93 (MQ=255)
tAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGc > 1:5112805/1‑93 (MQ=255)
aaCAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGcc > 1:4042477/1‑93 (MQ=255)
aCAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCg > 2:1054259/1‑93 (MQ=255)
aCAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCg > 1:645636/1‑93 (MQ=255)
aGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGtt > 2:2081944/1‑93 (MQ=255)
gCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTg > 2:4375172/1‑93 (MQ=255)
gCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTg > 2:6340519/1‑93 (MQ=255)
gCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTg > 1:5680139/1‑93 (MQ=255)
gCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTg > 2:2254036/1‑93 (MQ=255)
ccGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGc < 1:4187309/93‑1 (MQ=255)
gAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGTAAGCACCAGTACTACCGCTGCCGTTGCCa > 1:1852044/1‑93 (MQ=255)
gAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCa > 2:2094619/1‑93 (MQ=255)
aaaCGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCaa < 2:1947948/93‑1 (MQ=255)
accGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAAc < 2:6166429/91‑1 (MQ=255)
aaCGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAAc < 1:658456/93‑1 (MQ=255)
cGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAg > 1:5560237/1‑93 (MQ=255)
gTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGa < 2:4707222/93‑1 (MQ=255)
gTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGa > 1:5076670/1‑93 (MQ=255)
tAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGaa > 2:6426987/1‑93 (MQ=255)
aGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGaaa < 2:1865815/93‑1 (MQ=255)
gTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGaaaa > 1:600452/1‑93 (MQ=255)
gTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGaaaa < 1:1539860/93‑1 (MQ=255)
ttttATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAAc < 1:6031497/93‑1 (MQ=255)
ttttATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAAc < 1:3269038/93‑1 (MQ=255)
tttATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACg < 1:2528788/93‑1 (MQ=255)
tATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTa > 1:3916993/1‑93 (MQ=255)
aTCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTAc > 2:5034687/1‑93 (MQ=255)
aTCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTAc > 1:3483100/1‑93 (MQ=255)
tCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTAcc < 2:4122769/93‑1 (MQ=255)
cGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTAccc > 2:5489080/1‑93 (MQ=255)
cGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTAccc < 2:5079658/93‑1 (MQ=255)
cGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTAccc < 1:2613745/93‑1 (MQ=255)
cGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTAccc < 2:4758510/93‑1 (MQ=255)
cGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTAccc < 2:2633806/93‑1 (MQ=255)
gAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCg > 1:2792270/1‑93 (MQ=255)
gAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCg < 2:1802262/93‑1 (MQ=255)
gAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCg < 2:376759/93‑1 (MQ=255)
aaCTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCa > 2:3993125/1‑93 (MQ=255)
aaCTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCa < 2:3323285/93‑1 (MQ=255)
cTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGc > 2:1541744/1‑93 (MQ=255)
cTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGc < 1:1229802/93‑1 (MQ=255)
tGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCg > 2:5008733/1‑93 (MQ=255)
cgACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCg < 2:5769383/92‑1 (MQ=255)
gACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCga > 2:4211498/1‑93 (MQ=255)
gACGCTAGAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCga > 1:5373790/1‑93 (MQ=255)
aCGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCgag < 2:878865/93‑1 (MQ=255)
cTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGc < 1:3510904/93‑1 (MQ=255)
cTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGc > 2:1266225/1‑93 (MQ=255)
cTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGc < 1:4323611/93‑1 (MQ=255)
tataACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCg < 2:563627/93‑1 (MQ=255)
tataACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCg > 2:6367212/1‑93 (MQ=255)
ataACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCgg < 1:3441874/93‑1 (MQ=255)
taACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCggg < 1:497414/93‑1 (MQ=255)
taACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGAACCAGTACTACAGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCggg < 2:6655156/93‑1 (MQ=255)
aaCCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGa > 1:685294/1‑93 (MQ=255)
aCCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGaa > 2:5386863/1‑93 (MQ=255)
cGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGaaaa > 1:1186488/1‑93 (MQ=255)
gATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGaaaaa > 1:6267953/1‑93 (MQ=255)
gATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGaaaaa > 1:6224044/1‑93 (MQ=255)
|
TGTTTTCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAA > NC_000913/1188798‑1188979
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGTTTTCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGAAAAA > NC_000913/1188798‑1188978
|
TGTTTTCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGG < SRR4302547.5652454/94‑1 (MQ=60)
TGTTTTCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAG < SRR4302547.1989794/94‑1 (MQ=60)
GTTTTCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGC < SRR4302547.5647306/94‑1 (MQ=60)
TTTCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGC < SRR4302547.5269440/94‑1 (MQ=60)
TTCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCG < SRR4302547.3899709/94‑1 (MQ=60)
TTCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCA > SRR4302547.6547593/1‑94 (MQ=60)
TCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGA > SRR4302547.857526/1‑94 (MQ=60)
TCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGA > SRR4302547.2937051/1‑94 (MQ=60)
TCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGA > SRR4302547.4299995/1‑94 (MQ=60)
TCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGA < SRR4302547.1636685/94‑1 (MQ=60)
CCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACC > SRR4302547.3383655/1‑94 (MQ=60)
CACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCA > SRR4302547.5221456/1‑94 (MQ=60)
CACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCA > SRR4302547.2707862/1‑94 (MQ=60)
ACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCAT > SRR4302547.4546086/1‑94 (MQ=60)
CTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATT > SRR4302547.4633134/1‑94 (MQ=60)
TTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTC > SRR4302547.4320988/1‑94 (MQ=60)
TCGCAAGGTTATAGAACAGATTGCTCTCCCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCC < SRR4302547.2018723/94‑1 (MQ=60)
TCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCC > SRR4302547.5197063/1‑94 (MQ=60)
TCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCC > SRR4302547.234274/1‑94 (MQ=60)
TCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCC > SRR4302547.803446/1‑94 (MQ=60)
TCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCC < SRR4302547.5539297/94‑1 (MQ=60)
TCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCC > SRR4302547.441034/1‑94 (MQ=60)
CGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCG > SRR4302547.1217195/1‑94 (MQ=60)
CGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCG > SRR4302547.5954315/1‑94 (MQ=60)
CGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCG > SRR4302547.3107912/1‑94 (MQ=60)
CGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCG < SRR4302547.2438693/94‑1 (MQ=60)
CAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTA > SRR4302547.1203862/1‑94 (MQ=60)
CAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTA > SRR4302547.172324/1‑94 (MQ=60)
CAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTA < SRR4302547.1361986/94‑1 (MQ=60)
CAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACAATTCCGTA < SRR4302547.6674207/94‑1 (MQ=60)
AAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAG > SRR4302547.4232080/1‑94 (MQ=60)
AAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAG < SRR4302547.1879947/94‑1 (MQ=60)
AAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAG < SRR4302547.4838297/94‑1 (MQ=60)
AGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGG < SRR4302547.3559307/94‑1 (MQ=60)
AGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGG > SRR4302547.538593/1‑94 (MQ=60)
AGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGG > SRR4302547.631307/1‑94 (MQ=60)
GTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAA < SRR4302547.5911467/94‑1 (MQ=60)
GTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAA > SRR4302547.5005552/1‑94 (MQ=60)
GTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAA < SRR4302547.5005723/94‑1 (MQ=60)
TATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAG < SRR4302547.287792/94‑1 (MQ=60)
ATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGC < SRR4302547.4189621/94‑1 (MQ=60)
TAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCG < SRR4302547.5021786/94‑1 (MQ=60)
AGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGA > SRR4302547.1842884/1‑94 (MQ=60)
GAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAA < SRR4302547.4035078/94‑1 (MQ=60)
ACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAG < SRR4302547.6767319/94‑1 (MQ=60)
AGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCA > SRR4302547.3028484/1‑94 (MQ=60)
ATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACC > SRR4302547.696816/1‑94 (MQ=60)
TTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCA < SRR4302547.3493706/94‑1 (MQ=60)
GCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGT > SRR4302547.6683080/1‑94 (MQ=60)
GCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGT > SRR4302547.3053270/1‑94 (MQ=60)
GCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGT > SRR4302547.1479770/1‑94 (MQ=60)
CTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTA > SRR4302547.2715967/1‑94 (MQ=60)
CTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACT > SRR4302547.5526053/1‑94 (MQ=60)
TCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTA > SRR4302547.670532/1‑94 (MQ=60)
cgcaaggtacCAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATGGGCCCGCCCATCCCGTAGCCAGGCGAAAGCA‑CAGTACTACC < SRR4302547.3476758/84‑1 (MQ=41)
CCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCG > SRR4302547.5650219/1‑94 (MQ=60)
CCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCG < SRR4302547.1074092/94‑1 (MQ=60)
ACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCT < SRR4302547.669362/94‑1 (MQ=60)
ACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCT > SRR4302547.3625444/1‑94 (MQ=60)
ACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCT > SRR4302547.3416341/1‑94 (MQ=60)
ACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCT > SRR4302547.1712277/1‑94 (MQ=60)
ACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCT < SRR4302547.4607507/94‑1 (MQ=60)
GTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGC > SRR4302547.5218168/1‑94 (MQ=60)
GTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGC > SRR4302547.6744824/1‑94 (MQ=60)
GTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGC > SRR4302547.5560799/1‑94 (MQ=60)
TAACAGCCTAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCC < SRR4302547.5925438/94‑1 (MQ=60)
TAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCC > SRR4302547.4124570/1‑94 (MQ=60)
AACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCG > SRR4302547.657539/1‑94 (MQ=60)
ACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGT > SRR4302547.5761170/1‑94 (MQ=60)
CAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCCGTGCGACCATTCGGTAGGCAAGTGAAAGGACCACGACTACCGCTGCCGTT > SRR4302547.5881980/1‑94 (MQ=60)
AGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTG > SRR4302547.5797422/1‑94 (MQ=60)
CCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCC < SRR4302547.4272690/94‑1 (MQ=60)
CGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGTAAGCACCAGTACTACCGCTGCCGTTGCCA > SRR4302547.1888640/1‑94 (MQ=60)
CGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCA > SRR4302547.6659367/1‑94 (MQ=60)
GAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAA < SRR4302547.4351029/94‑1 (MQ=60)
GAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAA > SRR4302547.4745287/1‑94 (MQ=60)
AAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAAC > SRR4302547.3964164/1‑94 (MQ=60)
AAACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAAC > SRR4302547.798597/1‑94 (MQ=60)
AACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACA < SRR4302547.670583/94‑1 (MQ=60)
AACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACA > SRR4302547.5119141/1‑94 (MQ=60)
AACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACA < SRR4302547.3293749/94‑1 (MQ=60)
ACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAG > SRR4302547.5583097/1‑94 (MQ=60)
ACGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAG > SRR4302547.5674922/1‑94 (MQ=60)
CGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGA > SRR4302547.5181399/1‑94 (MQ=60)
CGTAGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGA > SRR4302547.3760180/1‑94 (MQ=60)
AGTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAA > SRR4302547.611556/1‑94 (MQ=60)
AGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAA < SRR4302547.3505070/94‑1 (MQ=60)
GTTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAAC < SRR4302547.1570514/94‑1 (MQ=60)
TTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACG < SRR4302547.3334460/94‑1 (MQ=60)
TTTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACG < SRR4302547.6156665/94‑1 (MQ=60)
TTTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGT < SRR4302547.2579896/94‑1 (MQ=60)
TTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGT < SRR4302547.612366/94‑1 (MQ=60)
TTATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTA > SRR4302547.3996640/1‑94 (MQ=60)
TATCGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTAC > SRR4302547.3554154/1‑94 (MQ=60)
TCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCC < SRR4302547.1388945/94‑1 (MQ=60)
CGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCG < SRR4302547.2666422/94‑1 (MQ=60)
CGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCG > SRR4302547.2848184/1‑94 (MQ=60)
CGAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCC > SRR4302547.4418410/1‑94 (MQ=60)
GAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGC > SRR4302547.5030043/1‑94 (MQ=60)
GAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGC > SRR4302547.6710301/1‑94 (MQ=60)
GAAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGC < SRR4302547.1824665/94‑1 (MQ=60)
AAACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCA > SRR4302547.2586460/1‑94 (MQ=60)
AACTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAG < SRR4302547.6143502/94‑1 (MQ=60)
ACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGC < SRR4302547.5888015/94‑1 (MQ=60)
CTGCCCCTATAACCCATCAGCGCAACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCG < SRR4302547.1419809/94‑1 (MQ=60)
CTGACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCG > SRR4302547.1425798/1‑94 (MQ=60)
CTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCG < SRR4302547.1254609/94‑1 (MQ=60)
TGACGCTAGAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGA > SRR4302547.5484693/1‑94 (MQ=60)
GACGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAG < SRR4302547.2707835/94‑1 (MQ=60)
CGCTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAG < SRR4302547.1278283/94‑1 (MQ=60)
CGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAG < SRR4302547.5223914/94‑1 (MQ=60)
CTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCG < SRR4302547.6379056/94‑1 (MQ=60)
CTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCG < SRR4302547.3582558/94‑1 (MQ=60)
CTATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCG > SRR4302547.2111184/1‑94 (MQ=60)
CTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCG < SRR4302547.4412614/94‑1 (MQ=60)
TATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGG < SRR4302547.5974690/94‑1 (MQ=60)
TATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGG < SRR4302547.2733867/94‑1 (MQ=60)
ATAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGG < SRR4302547.3512052/94‑1 (MQ=60)
TAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGA > SRR4302547.697945/1‑94 (MQ=60)
TAACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGA < SRR4302547.506481/94‑1 (MQ=60)
TAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGA < SRR4302547.2056188/94‑1 (MQ=60)
AACCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGAA < SRR4302547.3512850/94‑1 (MQ=60)
CCGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGAAAA > SRR4302547.1210452/1‑94 (MQ=60)
CGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGAAAAA > SRR4302547.6353310/1‑94 (MQ=60)
CGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGAAAAA > SRR4302547.1557853/1‑94 (MQ=60)
CGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGAAAAA > SRR4302547.6398162/1‑94 (MQ=60)
CGATCGGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGAAAAA > SRR4302547.6483002/1‑94 (MQ=60)
|
TGTTTTCCCACTTCGCAAGGGTATAGAACAGATTGCTCTCGCCACGTAACAGCCGAAACGTAGTTTTATCGAAACTGACGCTATAACCGATCAGCGCGACCATTCCGTAGGCAAGCGAAAGCACCAGTACTACCGCTGCCGTTGCCAACAGAAAACGTACCCGCAGCGAGAGCGGGAAAAA > NC_000913/1188798‑1188978
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
