Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,407,361 T→C intergenic (+304/‑174) b1342 → / → dbpA hypothetical protein/ATP‑dependent RNA helicase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,407,3610TC81.2% 439.2 / 103.4 197intergenic (+304/‑174)b1342/dbpAhypothetical protein/ATP‑dependent RNA helicase
Reads supporting (aligned to +/- strand):  ref base T (17/20);  new base C (96/64);  total (113/84)
Fisher's exact test for biased strand distribution p-value = 1.41e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.78e-01

Only 100 of 202 total aligned reads displayed.

TTTTTTGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGAAC  >  NC_000913/1407269‑1407452
                                                                                            |                                                                                           
   tttGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTc                                                                                          >  2:120801/1‑93 (MQ=255)
    ttGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTcc                                                                                         <  1:516304/93‑1 (MQ=255)
    ttGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTcc                                                                                         >  2:5537702/1‑93 (MQ=255)
     tGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTccc                                                                                        <  1:5141605/93‑1 (MQ=255)
     tGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTccc                                                                                        >  1:4534353/1‑93 (MQ=255)
      gCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCt                                                                                       <  2:4249453/93‑1 (MQ=255)
      gCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCt                                                                                       >  1:2803896/1‑93 (MQ=255)
      gCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCt                                                                                       >  2:5215239/1‑93 (MQ=255)
      gCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCt                                                                                       >  2:4705653/1‑93 (MQ=255)
         tGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGACCCTGaa                                                                                    >  2:6549768/1‑93 (MQ=255)
          gTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAAc                                                                                   <  2:1878870/93‑1 (MQ=255)
          gTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAAc                                                                                   <  2:1695921/93‑1 (MQ=255)
           ttatttatCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAAcc                                                                                  <  1:4320966/93‑1 (MQ=255)
           ttatttatCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAAcc                                                                                  >  2:6123287/1‑93 (MQ=255)
             atttatCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGa                                                                                >  2:3832909/1‑93 (MQ=255)
              tttatCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGAt                                                                               >  1:3689199/1‑93 (MQ=255)
              tttatCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGAt                                                                               <  1:2202297/93‑1 (MQ=255)
              tttatCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGAt                                                                               >  2:4697419/1‑93 (MQ=255)
              tttatCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGAt                                                                               <  1:462422/93‑1 (MQ=255)
              tttatCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGAt                                                                               >  1:5888651/1‑93 (MQ=255)
                 atCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTcc                                                                            >  2:2468545/1‑93 (MQ=255)
                  tCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCt                                                                           >  2:1258468/1‑93 (MQ=255)
                  tCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCt                                                                           >  2:5759469/1‑93 (MQ=255)
                  tCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCt                                                                           >  2:4027066/1‑93 (MQ=255)
                  tCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCt                                                                           <  1:4961100/93‑1 (MQ=255)
                   cAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTg                                                                          <  2:3154288/93‑1 (MQ=255)
                    aGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTgg                                                                         >  2:1183756/1‑93 (MQ=255)
                     gCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGc                                                                        <  2:1834359/93‑1 (MQ=255)
                     gCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGc                                                                        >  1:6563669/1‑93 (MQ=255)
                       gTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGa                                                                      <  2:6591379/93‑1 (MQ=255)
                         cTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATc                                                                    <  1:5073580/93‑1 (MQ=255)
                          tACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATcc                                                                   >  1:3790280/1‑93 (MQ=255)
                          tACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATcc                                                                   >  1:3144992/1‑93 (MQ=255)
                          tACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATcc                                                                   <  2:1772866/93‑1 (MQ=255)
                          tACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATcc                                                                   <  1:6128250/93‑1 (MQ=255)
                           aCCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCt                                                                  >  2:2394838/1‑93 (MQ=255)
                           aCCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCt                                                                  >  1:2645457/1‑93 (MQ=255)
                             ccTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGt                                                                <  2:6625639/93‑1 (MQ=255)
                             ccTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGt                                                                >  1:441693/1‑93 (MQ=255)
                              cTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGtt                                                               >  1:1697977/1‑93 (MQ=255)
                              cTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGtt                                                               >  1:921732/1‑93 (MQ=255)
                               tttAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTc                                                              >  1:4947116/1‑93 (MQ=255)
                               tttAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTc                                                              >  2:4944811/1‑93 (MQ=255)
                                    gagTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTg                                                         <  1:4825131/93‑1 (MQ=255)
                                     agTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGc                                                        >  1:3857581/1‑93 (MQ=255)
                                     agTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGc                                                        >  2:5936951/1‑93 (MQ=255)
                                     agTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGc                                                        >  2:6355518/1‑93 (MQ=255)
                                      gTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGcc                                                       >  1:1258204/1‑93 (MQ=255)
                                        ccACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCccg                                                     <  1:6425780/93‑1 (MQ=255)
                                        ccACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCccg                                                     <  1:5411013/93‑1 (MQ=255)
                                         cACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCccga                                                    >  2:3899388/1‑93 (MQ=255)
                                           cccAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCccgatc                                                  <  2:2823508/93‑1 (MQ=255)
                                            ccAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCccgatcc                                                 >  1:1623884/1‑93 (MQ=255)
                                            ccAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCccgatcc                                                 <  1:2986913/93‑1 (MQ=255)
                                            ccAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCccgatcc                                                 <  2:2565169/93‑1 (MQ=255)
                                            ccAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCAATTCCTGGCGATCCTGTTCCAGTGCccgatcc                                                 >  2:4406340/1‑93 (MQ=255)
                                               aTGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCccgatccgat                                              <  1:1198851/93‑1 (MQ=255)
                                                   ccAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCt                                          >  1:5263650/1‑93 (MQ=255)
                                                    cAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTc                                         <  1:2351393/93‑1 (MQ=255)
                                                    cAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTc                                         >  1:1810756/1‑93 (MQ=255)
                                                      gagGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCATCGc                                       >  1:5780612/1‑93 (MQ=255)
                                                       agGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGcc                                      <  2:4527396/93‑1 (MQ=255)
                                                        gggAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGccc                                     >  1:4032052/1‑93 (MQ=255)
                                                          gAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGc                                   >  2:4002142/1‑93 (MQ=255)
                                                          gAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGc                                   >  1:415987/1‑93 (MQ=255)
                                                           aaaTATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCa                                  >  1:646879/1‑93 (MQ=255)
                                                           aaaTATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCa                                  >  1:3129948/1‑93 (MQ=255)
                                                           aaaTATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCAATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCa                                  >  2:4308891/1‑93 (MQ=255)
                                                            aaTATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCac                                 >  2:3938457/1‑92 (MQ=255)
                                                             atatGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAAc                                >  2:3852239/1‑93 (MQ=255)
                                                              tatGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAAcc                               >  1:3979367/1‑93 (MQ=255)
                                                              tatGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAAcc                               <  1:1712815/93‑1 (MQ=255)
                                                                tGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCa                             <  2:6189938/93‑1 (MQ=255)
                                                                tGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCa                             <  1:2498134/93‑1 (MQ=255)
                                                                  acgacACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATg                           >  1:2140018/1‑93 (MQ=255)
                                                                   cgacACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGc                          >  1:5535930/1‑93 (MQ=255)
                                                                      cacTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCCACCCATGCCTg                       >  2:4625747/1‑93 (MQ=255)
                                                                      cacTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTg                       >  1:2033642/1‑93 (MQ=255)
                                                                        cTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGAc                     >  1:5658550/1‑93 (MQ=255)
                                                                         ttatttatTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGAcc                    >  1:1773106/1‑93 (MQ=255)
                                                                         ttatttatTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGAcc                    >  1:3332843/1‑93 (MQ=255)
                                                                          tatttattTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGAccc                   <  2:2314675/93‑1 (MQ=255)
                                                                          tatttattTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGAccc                   >  1:4695024/1‑93 (MQ=255)
                                                                           atttatttGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACcca                  >  1:1560251/1‑93 (MQ=255)
                                                                           atttatttGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACcca                  <  2:1497933/93‑1 (MQ=255)
                                                                            tttatttGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACccac                 >  1:275868/1‑93 (MQ=255)
                                                                            tttatttGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACccac                 >  2:1539352/1‑93 (MQ=255)
                                                                            tttatttGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACccac                 <  2:6069245/93‑1 (MQ=255)
                                                                            tttatttGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACccac                 >  1:2006771/1‑93 (MQ=255)
                                                                               atttGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCcaccac              <  1:3544767/93‑1 (MQ=255)
                                                                                tttGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCaccacc             <  1:943951/93‑1 (MQ=255)
                                                                                    cAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGAt         <  2:767635/93‑1 (MQ=255)
                                                                                      aaTTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATTCCTGACCCACCACCCGATga       >  2:3620105/1‑93 (MQ=255)
                                                                                      aaTTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATga       >  2:5439021/1‑93 (MQ=255)
                                                                                      aaTTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATga       >  2:1633135/1‑93 (MQ=255)
                                                                                      aaTTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATga       >  2:4345618/1‑93 (MQ=255)
                                                                                        ttCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATgaag     >  1:6335801/1‑93 (MQ=255)
                                                                                         tCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATgaaga    <  2:1918646/93‑1 (MQ=255)
                                                                                         tCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATgaaga    <  1:6294139/93‑1 (MQ=255)
                                                                                         tCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATgaaga    <  2:1507097/93‑1 (MQ=255)
                                                                                            |                                                                                           
TTTTTTGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGAAC  >  NC_000913/1407269‑1407452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTTTTTGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGAACCG  >  NC_000913/1407268‑1407454
                                                                                             |                                                                                             
TTTTTTTGCATGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCC                                                                                               >  SRR4302547.6258958/1‑94 (MQ=60)
 TTTTTTGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTG                                                                                              <  SRR4302547.1739766/94‑1 (MQ=60)
 TTTTTTGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCG                                                                                              <  SRR4302547.6186371/94‑1 (MQ=60)
  TTTTTGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGT                                                                                             <  SRR4302547.5666818/94‑1 (MQ=60)
  TTTTTGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGT                                                                                             <  SRR4302547.6265056/94‑1 (MQ=60)
  TTTTTGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGT                                                                                             <  SRR4302547.6523530/94‑1 (MQ=60)
  TTTTTGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGT                                                                                             >  SRR4302547.3017085/1‑94 (MQ=60)
   TTTTGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTC                                                                                            <  SRR4302547.389979/94‑1 (MQ=60)
    TTTGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCC                                                                                           <  SRR4302547.2261811/94‑1 (MQ=60)
     TTGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCC                                                                                          <  SRR4302547.525668/94‑1 (MQ=60)
     TTGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCC                                                                                          >  SRR4302547.4628065/1‑94 (MQ=60)
      TGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCT                                                                                         <  SRR4302547.5247517/94‑1 (MQ=60)
      TGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCT                                                                                         >  SRR4302547.2860028/1‑94 (MQ=60)
      TGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCT                                                                                         <  SRR4302547.4888323/94‑1 (MQ=60)
         CTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAA                                                                                      <  SRR4302547.3313278/94‑1 (MQ=60)
         CTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAA                                                                                      >  SRR4302547.2100750/1‑94 (MQ=60)
          TGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAAC                                                                                     >  SRR4302547.547422/1‑94 (MQ=60)
          TGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAAC                                                                                     <  SRR4302547.627009/94‑1 (MQ=60)
            TTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCG                                                                                   <  SRR4302547.4409915/94‑1 (MQ=60)
              ATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGAT                                                                                 >  SRR4302547.3764511/1‑94 (MQ=60)
              ATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGAT                                                                                 <  SRR4302547.377197/94‑1 (MQ=60)
              ATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGAT                                                                                 >  SRR4302547.6010560/1‑94 (MQ=60)
               TTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATT                                                                                <  SRR4302547.470960/94‑1 (MQ=60)
               TTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATT                                                                                <  SRR4302547.2246540/94‑1 (MQ=60)
                TTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTC                                                                               <  SRR4302547.1795280/94‑1 (MQ=60)
                   TCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTG                                                                            <  SRR4302547.5063762/94‑1 (MQ=60)
                     AGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGC                                                                          >  SRR4302547.6700336/1‑94 (MQ=60)
                      GCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCG                                                                         <  SRR4302547.6589826/94‑1 (MQ=60)
                         TCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATC                                                                      <  SRR4302547.3190019/94‑1 (MQ=60)
                          CTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCC                                                                     >  SRR4302547.3207483/1‑94 (MQ=60)
                          CTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCC                                                                     >  SRR4302547.3867564/1‑94 (MQ=60)
                          CTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCC                                                                     <  SRR4302547.5225105/94‑1 (MQ=60)
                          CTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCC                                                                     <  SRR4302547.5875515/94‑1 (MQ=60)
                          CTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCC                                                                     <  SRR4302547.5178253/94‑1 (MQ=60)
                           TACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCT                                                                    >  SRR4302547.5059010/1‑94 (MQ=60)
                           TACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCT                                                                    >  SRR4302547.2698686/1‑94 (MQ=60)
                           TACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCT                                                                    <  SRR4302547.6255377/94‑1 (MQ=60)
                             CCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGT                                                                  >  SRR4302547.449923/1‑94 (MQ=60)
                             CCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGT                                                                  >  SRR4302547.2642768/1‑94 (MQ=60)
                              CCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTT                                                                 >  SRR4302547.1731361/1‑94 (MQ=60)
                              CCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTT                                                                 >  SRR4302547.939537/1‑94 (MQ=60)
                               CTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTC                                                                >  SRR4302547.6692906/1‑94 (MQ=60)
                               CTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTC                                                                >  SRR4302547.5049567/1‑94 (MQ=60)
                                 TTAAGAGTCCACCCAATGAGCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCA                                                              <  SRR4302547.4025765/94‑1 (MQ=60)
                                  TAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAG                                                             <  SRR4302547.4423712/94‑1 (MQ=60)
                                   AAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGG                                                            >  SRR4302547.3655612/1‑94 (MQ=60)
                                    AGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTG                                                           >  SRR4302547.1724976/1‑94 (MQ=60)
                                     GAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGC                                                          <  SRR4302547.4925168/94‑1 (MQ=60)
                                     GAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGC                                                          <  SRR4302547.6683417/94‑1 (MQ=60)
                                     GAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGC                                                          >  SRR4302547.3936090/1‑94 (MQ=60)
                                      AGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCC                                                         >  SRR4302547.1283571/1‑94 (MQ=60)
                                       GTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCC                                                        >  SRR4302547.220110/1‑94 (MQ=60)
                                         CCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGA                                                      <  SRR4302547.5522925/94‑1 (MQ=60)
                                         CCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGA                                                      <  SRR4302547.6559741/94‑1 (MQ=60)
                                           ACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATC                                                    <  SRR4302547.2050041/94‑1 (MQ=60)
                                            CCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCC                                                   >  SRR4302547.1656015/1‑94 (MQ=60)
                                             CCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCG                                                  <  SRR4302547.2728105/94‑1 (MQ=60)
                                             CCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCG                                                  <  SRR4302547.3046342/94‑1 (MQ=60)
                                                ATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATC                                               <  SRR4302547.1223039/94‑1 (MQ=60)
                                                ATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATC                                               >  SRR4302547.2851035/1‑94 (MQ=60)
                                                   ACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCT                                            >  SRR4302547.5372045/1‑94 (MQ=60)
                                                    CCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTC                                           <  SRR4302547.6503766/94‑1 (MQ=60)
                                                    CCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTC                                           <  SRR4302547.5068120/94‑1 (MQ=60)
                                                    CCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTC                                           >  SRR4302547.1846531/1‑94 (MQ=60)
                                                     CAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCG                                          <  SRR4302547.4366706/94‑1 (MQ=60)
                                                     CAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCG                                          <  SRR4302547.2399046/94‑1 (MQ=60)
                                                      AGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGC                                         >  SRR4302547.4992650/1‑94 (MQ=60)
                                                      AGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCATCGC                                         >  SRR4302547.5900175/1‑94 (MQ=60)
                                                        AGGGACATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTCAACCGCTTCCTGGCGATGCTGTTCTAGTGCCCGCTCCGATCCCTCGCCC                                       >  SRR4302547.1119448/1‑94 (MQ=60)
                                                        AGGGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCC                                       >  SRR4302547.4113938/1‑94 (MQ=60)
                                                          GGAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGC                                     >  SRR4302547.423700/1‑94 (MQ=60)
                                                           GAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCA                                    >  SRR4302547.658804/1‑94 (MQ=60)
                                                           GAAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCA                                    >  SRR4302547.3192065/1‑94 (MQ=60)
                                                            AAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAA                                   >  SRR4302547.959827/1‑94 (MQ=60)
                                                            AAATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAA                                   >  SRR4302547.1566371/1‑94 (MQ=60)
                                                              ATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACC                                 >  SRR4302547.4060279/1‑94 (MQ=60)
                                                              ATATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACC                                 >  SRR4302547.5364529/1‑94 (MQ=60)
                                                               TATGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCC                                <  SRR4302547.1746503/94‑1 (MQ=60)
                                                                 TGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCAT                              >  SRR4302547.5713350/1‑94 (MQ=60)
                                                                 TGACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCAT                              <  SRR4302547.2548602/94‑1 (MQ=60)
                                                                  GACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATG                             >  SRR4302547.2182691/1‑94 (MQ=60)
                                                                   ACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGC                            >  SRR4302547.6781164/1‑94 (MQ=60)
                                                                   ACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGC                            >  SRR4302547.4695150/1‑94 (MQ=60)
                                                                   ACGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGC                            >  SRR4302547.5650177/1‑94 (MQ=60)
                                                                    CGACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCC                           <  SRR4302547.4748453/94‑1 (MQ=60)
                                                                      ACACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTG                         >  SRR4302547.2074157/1‑94 (MQ=60)
                                                                       CACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGA                        <  SRR4302547.6181072/94‑1 (MQ=60)
                                                                        ACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGAC                       >  SRR4302547.5919860/1‑94 (MQ=60)
                                                                        ACTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGAC                       >  SRR4302547.5775354/1‑94 (MQ=60)
                                                                         CTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACC                      >  SRR4302547.1808251/1‑94 (MQ=60)
                                                                         CTTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACC                      >  SRR4302547.3400246/1‑94 (MQ=60)
                                                                          TTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCC                     >  SRR4302547.41379/1‑94 (MQ=60)
                                                                          TTATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCC                     >  SRR4302547.4792270/1‑94 (MQ=60)
                                                                           TATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCA                    >  SRR4302547.1591336/1‑94 (MQ=60)
                                                                           TATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCA                    >  SRR4302547.3206624/1‑94 (MQ=60)
                                                                           TATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCA                    >  SRR4302547.3409742/1‑94 (MQ=60)
                                                                           TATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCA                    <  SRR4302547.1825074/94‑1 (MQ=60)
                                                                            ATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCAC                   >  SRR4302547.281020/1‑94 (MQ=60)
                                                                            ATTTATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCAC                   >  SRR4302547.2046703/1‑94 (MQ=60)
                                                                                ATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACC               <  SRR4302547.3617110/94‑1 (MQ=60)
                                                                                ATTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACC               >  SRR4302547.1894803/1‑94 (MQ=60)
                                                                                 TTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCC              <  SRR4302547.962247/94‑1 (MQ=60)
                                                                                 TTTGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCC              >  SRR4302547.1647142/1‑94 (MQ=60)
                                                                                   TGCAAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGA            <  SRR4302547.4569640/94‑1 (MQ=60)
                                                                                      AAATTCCCGTCCCTGACCCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGA         <  SRR4302547.2423491/94‑1 (MQ=60)
                                                                                      AAATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGA         >  SRR4302547.1281094/1‑94 (MQ=60)
                                                                                       AATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAA        >  SRR4302547.5267922/1‑94 (MQ=60)
                                                                                       AATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTCCCCGATCCGATCCCTCGCCCGCAAACCATGCCTGACCCACCACCCGATGAA        <  SRR4302547.4105308/94‑1 (MQ=60)
                                                                                        ATTCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAG       >  SRR4302547.6467722/1‑94 (MQ=60)
                                                                                         TTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGA      <  SRR4302547.5552991/94‑1 (MQ=60)
                                                                                          TCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGAA     <  SRR4302547.6424985/94‑1 (MQ=60)
                                                                                          TCCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGAA     >  SRR4302547.833394/1‑94 (MQ=60)
                                                                                           CCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGAAC    >  SRR4302547.189442/1‑94 (MQ=60)
                                                                                           CCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGAAC    >  SRR4302547.2799862/1‑94 (MQ=60)
                                                                                           CCCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGAAC    <  SRR4302547.335266/94‑1 (MQ=60)
                                                                                            CTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTCCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGAACC   <  SRR4302547.6445785/94‑1 (MQ=60)
                                                                                            CCGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGAACC   <  SRR4302547.6008779/94‑1 (MQ=60)
                                                                                             CGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGAACCG  <  SRR4302547.5354590/94‑1 (MQ=60)
                                                                                             CGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGAACCG  >  SRR4302547.5507205/1‑94 (MQ=60)
                                                                                             CGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGAACCG  <  SRR4302547.5788836/94‑1 (MQ=60)
                                                                                             |                                                                                             
TTTTTTTGCCTGTTATTTATCAGCGTCTACCCTTTAAGAGTCCACCCAATGACCAGAGGGAAATATGACGACACTTATTTATTTGCAAATTCCTGTCCCTGAACCGATTCCTGGCGATCCTGTTCCAGTGCCCGATCCGATCCCTCGCCCGCAACCCATGCCTGACCCACCACCCGATGAAGAACCG  >  NC_000913/1407268‑1407454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑