Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,536,978 |
T→C |
T1213A (ACC→GCC) |
narZ ← |
cryptic nitrate reductase 2 alpha subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,536,978 | 0 | T | C | 85.5%
| 597.1
/ 79.4
| 234 | T1213A (ACC→GCC) | narZ | cryptic nitrate reductase 2 alpha subunit |
| Reads supporting (aligned to +/- strand): ref base T (24/10); new base C (111/89); total (135/99) |
| Fisher's exact test for biased strand distribution p-value = 1.33e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
Only 100 of 246 total aligned reads displayed.
CTCCTGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATGAAT > NC_000913/1536886‑1537068
|
ctcctGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGt < 1:2695266/93‑1 (MQ=255)
cctGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGgcgc > 2:475383/1‑93 (MQ=255)
cctGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGgcgc > 1:3498842/1‑93 (MQ=255)
gTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCgt > 2:3233605/1‑93 (MQ=255)
gTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCgt < 1:6551765/93‑1 (MQ=255)
gTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCgt > 1:3851105/1‑93 (MQ=255)
tACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCgta < 1:3360810/93‑1 (MQ=255)
aCCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCgtag > 2:6544453/1‑93 (MQ=255)
aCCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCgtag < 1:5644190/93‑1 (MQ=255)
aCCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCgtag > 1:2301251/1‑93 (MQ=255)
ccTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCgtagt > 2:680620/1‑93 (MQ=255)
gATCGCGACCTCCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGACCTCATCGCGGTTCGATCCGACGGTGCCGTagtagt < 1:5723056/93‑1 (MQ=255)
tCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTa > 1:423726/1‑93 (MQ=255)
gcgACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTaaa < 2:815524/93‑1 (MQ=255)
gcgACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTaaa < 1:5180416/93‑1 (MQ=255)
cgACCTTCATCACCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACGCATCGCGATTCGATCCGACGGCGCCGTAGTAGTTAAAg < 1:606991/93‑1 (MQ=255)
aCCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGcc > 1:2762580/1‑93 (MQ=255)
aCCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGcc > 2:2117195/1‑93 (MQ=255)
ccTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGccc > 1:1370382/1‑93 (MQ=255)
tcatcaTCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAg > 2:6357067/1‑93 (MQ=255)
tcatcaTCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAAATCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAg > 1:1924100/1‑93 (MQ=255)
catcatCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAgg > 2:3068549/1‑93 (MQ=255)
atcatcCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGc > 2:1809331/1‑93 (MQ=255)
atcatcCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGc < 2:3730812/93‑1 (MQ=255)
atcatcCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGc < 2:2082442/93‑1 (MQ=255)
tcatcCAGTCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGcc > 1:6478159/1‑93 (MQ=255)
tcatcCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATTAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGcc > 1:6377597/1‑93 (MQ=255)
catcCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCa < 1:3950221/93‑1 (MQ=255)
atcCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAg > 2:2639717/1‑93 (MQ=255)
tcCAGCCAGTTAACGTTCTTCATCATGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGc < 1:1759624/93‑1 (MQ=255)
ccagccagTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCt > 1:2277369/1‑93 (MQ=255)
cagccagTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTg < 2:3364692/93‑1 (MQ=255)
gccagTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTgcg > 2:5182352/1‑93 (MQ=255)
gccagTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTgcg < 1:6089000/93‑1 (MQ=255)
gccagTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTgcg > 1:1255307/1‑93 (MQ=255)
gccagTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGACCCAGGCCAGCTgcg > 2:2329997/1‑93 (MQ=255)
cagTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGcgcg > 1:4868553/1‑93 (MQ=255)
agTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGt > 1:4835427/1‑93 (MQ=255)
agTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGt < 2:2728116/93‑1 (MQ=255)
ttAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTaa < 2:2498072/93‑1 (MQ=255)
tAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAAc < 1:2796338/93‑1 (MQ=255)
aCGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCg > 1:3647210/1‑93 (MQ=255)
gTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGcc > 2:5312117/1‑93 (MQ=255)
ttcttcATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCa > 1:5550971/1‑93 (MQ=255)
tcttcATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCaa > 2:6479346/1‑93 (MQ=255)
ttcATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATc > 1:1529602/1‑93 (MQ=255)
tcATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCa > 1:3248348/1‑93 (MQ=255)
tcATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCa < 2:5267526/93‑1 (MQ=255)
tcATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCa > 2:3929382/1‑93 (MQ=255)
tcATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCa > 1:5300164/1‑93 (MQ=255)
aTCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCata < 1:1499721/93‑1 (MQ=255)
tCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCatat < 2:6270264/93‑1 (MQ=255)
tCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCatat < 1:6179155/93‑1 (MQ=255)
tCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCatat > 2:1351767/1‑93 (MQ=255)
tCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCatat < 1:4081254/93‑1 (MQ=255)
cTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATg < 1:3404475/93‑1 (MQ=255)
ttGCGGATCATGATGCACTCATCGCGCTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGc < 2:1579382/93‑1 (MQ=255)
ttGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAACCATAAGc > 1:3741375/1‑93 (MQ=255)
gCGGATCATGATGAACTCATCGCGGTTCGTTCCGACGGCTCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGt < 1:4444515/93‑1 (MQ=255)
gCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGt < 1:1606746/93‑1 (MQ=255)
cGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGtt < 2:5065158/93‑1 (MQ=255)
cGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGtt > 2:4451695/1‑93 (MQ=255)
ggATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTg < 1:505200/93‑1 (MQ=255)
gATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTgg > 1:979666/1‑93 (MQ=255)
cATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGttt > 1:4351544/1‑93 (MQ=255)
cATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGttt < 2:5804700/93‑1 (MQ=255)
atgatgAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTc < 2:5626751/93‑1 (MQ=255)
tgatgaACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCg < 2:4227447/93‑1 (MQ=255)
gatgaACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCgg > 2:2264243/1‑93 (MQ=255)
tgaACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGc > 1:834552/1‑93 (MQ=255)
tgaACTCATCGCGGTTCGATCCGACGGCGCC‑TAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCa < 2:3426240/93‑1 (MQ=255)
gaACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCa < 2:282816/93‑1 (MQ=255)
aaCTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCaa > 2:3627843/1‑93 (MQ=255)
tCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAAcg > 2:4393222/1‑93 (MQ=255)
tCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAAcg > 2:4601054/1‑93 (MQ=255)
cATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAAcgc < 2:6574735/93‑1 (MQ=255)
aTCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAAcgcg > 2:2939609/1‑93 (MQ=255)
tCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCgg < 2:4656510/93‑1 (MQ=255)
tCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCgg > 1:1014398/1‑93 (MQ=255)
tCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCgg < 2:57143/93‑1 (MQ=255)
gcgGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGt < 2:6071734/93‑1 (MQ=255)
cgGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTa > 1:2883960/1‑93 (MQ=255)
cgGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTa > 1:588282/1‑93 (MQ=255)
cgGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTa < 2:1832017/93‑1 (MQ=255)
ggTTCGATCCGACGGTGCCGTGGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTaa > 2:5426393/1‑93 (MQ=255)
ggTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTaa < 1:2064829/93‑1 (MQ=255)
gTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAAc > 1:1838052/1‑93 (MQ=255)
gTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAAc > 2:4875601/1‑93 (MQ=255)
ttCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAAcc < 1:4783889/93‑1 (MQ=255)
ttCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAAcc < 1:1136676/93‑1 (MQ=255)
cGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGa < 2:6408840/93‑1 (MQ=255)
gATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAg > 1:6287527/1‑93 (MQ=255)
gATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAg > 1:4612637/1‑93 (MQ=255)
aTCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGt > 1:5470640/1‑93 (MQ=255)
tCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGtt < 2:5408742/93‑1 (MQ=255)
tCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGtt > 2:5873889/1‑93 (MQ=255)
cGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTAt < 1:2452413/93‑1 (MQ=255)
cGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTAt > 1:5508067/1‑93 (MQ=255)
gACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATg < 1:360785/93‑1 (MQ=255)
cGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATGaa > 2:3836536/1‑93 (MQ=255)
|
CTCCTGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATGAAT > NC_000913/1536886‑1537068
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTCCTGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATGAATGC > NC_000913/1536885‑1537070
|
CCTCCTGTCCCTGATCGCGACTTTCATCAAACAGCCAGTTACCGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGC < SRR4302547.6486868/94‑1 (MQ=60)
CCTCCTGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGC < SRR4302547.4305226/94‑1 (MQ=60)
cgcgagttCCTGAGCGCGACCTTCGTCATCCAGCCAGTTAACGTTCTTCATTTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTG < SRR4302547.4870425/86‑1 (MQ=60)
CTCCTGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTG > SRR4302547.3937286/1‑94 (MQ=60)
CTCCTGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTG < SRR4302547.2749378/94‑1 (MQ=60)
CTCCTGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCG > SRR4302547.5564797/1‑94 (MQ=60)
CTCCTGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCG > SRR4302547.4830811/1‑94 (MQ=60)
CTCCTGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCG > SRR4302547.328622/1‑94 (MQ=60)
TCCTGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGC > SRR4302547.3570247/1‑94 (MQ=60)
CCTGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCC < SRR4302547.2774015/94‑1 (MQ=60)
CCTGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGGTCGATCCGACGGCGCC > SRR4302547.3646767/1‑94 (MQ=60)
TGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGT > SRR4302547.3929501/1‑94 (MQ=60)
GTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTA > SRR4302547.5797970/1‑94 (MQ=60)
GTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTA < SRR4302547.6425753/94‑1 (MQ=60)
GTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTA > SRR4302547.3344538/1‑94 (MQ=60)
GTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTA < SRR4302547.6688118/94‑1 (MQ=60)
GTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCCTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTA > SRR4302547.2968474/1‑94 (MQ=60)
TACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAG < SRR4302547.3429025/94‑1 (MQ=60)
TACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAG > SRR4302547.4328720/1‑94 (MQ=60)
TACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAG > SRR4302547.2347885/1‑94 (MQ=60)
ACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGT > SRR4302547.4565817/1‑94 (MQ=60)
ACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGT < SRR4302547.5760690/94‑1 (MQ=60)
CCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTA > SRR4302547.2893484/1‑94 (MQ=60)
GATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGGCGGCGCCGTAGTAGTT < SRR4302547.5346385/94‑1 (MQ=60)
GATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTT > SRR4302547.1919660/1‑94 (MQ=60)
GATCGCGACCTCCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGACCTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTT < SRR4302547.5841281/94‑1 (MQ=60)
ATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTA > SRR4302547.431582/1‑94 (MQ=60)
TCGCGCCCTTCATCATCCAGCCAGTTAACGTCCTTCATCTTGCGGATCATGATGAACTCGTCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAA < SRR4302547.6774749/94‑1 (MQ=60)
CGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAA > SRR4302547.1004551/1‑94 (MQ=60)
CGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAA > SRR4302547.1731376/1‑94 (MQ=60)
GCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAG < SRR4302547.5287034/94‑1 (MQ=60)
CGACCTTCATCACCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACGCATCGCGATTCGATCCGACGGCGCCGTAGTAGTTAAAGC < SRR4302547.618273/94‑1 (MQ=60)
GACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCC > SRR4302547.2817947/1‑94 (MQ=60)
ACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCC > SRR4302547.623221/1‑94 (MQ=60)
ACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCC > SRR4302547.1397877/1‑94 (MQ=60)
ACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCC < SRR4302547.3748484/94‑1 (MQ=60)
ACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCC > SRR4302547.4068870/1‑94 (MQ=60)
CTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCA > SRR4302547.255192/1‑94 (MQ=60)
CTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCA < SRR4302547.6723714/94‑1 (MQ=60)
CTTCATCACCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCA < SRR4302547.6225760/94‑1 (MQ=60)
TTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAG < SRR4302547.2671058/94‑1 (MQ=60)
TTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAAATCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAG > SRR4302547.1962215/1‑94 (MQ=60)
CATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGC < SRR4302547.1538456/94‑1 (MQ=60)
CATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGC < SRR4302547.4918636/94‑1 (MQ=60)
ATCATCCAGTCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCC > SRR4302547.6613042/1‑94 (MQ=60)
ATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATTAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCC > SRR4302547.6510682/1‑94 (MQ=60)
TCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCA < SRR4302547.1311514/94‑1 (MQ=60)
TCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCA < SRR4302547.1586942/94‑1 (MQ=60)
CATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAG > SRR4302547.6542493/1‑94 (MQ=60)
CATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAG < SRR4302547.4030571/94‑1 (MQ=60)
ATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGC > SRR4302547.6468945/1‑94 (MQ=60)
ATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGC > SRR4302547.5161994/1‑94 (MQ=60)
TCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCT > SRR4302547.2323429/1‑94 (MQ=60)
TCCAGCCAGTTAACGTTCTTCATCATGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCT < SRR4302547.1794490/94‑1 (MQ=60)
CCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTG > SRR4302547.6164163/1‑94 (MQ=60)
CCAGCCAGTTAACGTTCTTCATCTTGCGGAACATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTG < SRR4302547.5633870/94‑1 (MQ=60)
CAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGC > SRR4302547.2831817/1‑94 (MQ=60)
CAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGC < SRR4302547.1656579/94‑1 (MQ=60)
CAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGC < SRR4302547.5925581/94‑1 (MQ=60)
AGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCG > SRR4302547.1280618/1‑94 (MQ=60)
GCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGC < SRR4302547.6215308/94‑1 (MQ=60)
CCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCG > SRR4302547.3557029/1‑94 (MQ=60)
CCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCG > SRR4302547.4969448/1‑94 (MQ=60)
CAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGT > SRR4302547.4935667/1‑94 (MQ=60)
CAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGT < SRR4302547.12806/94‑1 (MQ=60)
GTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAA > SRR4302547.460484/1‑94 (MQ=60)
TTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAAC > SRR4302547.2215333/1‑94 (MQ=60)
TTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAAC > SRR4302547.5342985/1‑94 (MQ=60)
TAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAATGCCCCAGGCCAGCTGCGCGTAACC < SRR4302547.617829/94‑1 (MQ=60)
TAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACC < SRR4302547.2852312/94‑1 (MQ=60)
TAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACC > SRR4302547.4260501/1‑94 (MQ=60)
AACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCG < SRR4302547.562285/94‑1 (MQ=60)
AACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCG > SRR4302547.3721597/1‑94 (MQ=60)
ACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGC > SRR4302547.4385581/1‑94 (MQ=60)
GTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCA > SRR4302547.5665496/1‑94 (MQ=60)
ATTCTTCATCTTGTGGATCATGATAAACTCTTCGCGGTTAGATCCGACGGCGACGCAGTAGTTAAAGCCCCAGGCCAGCCGCGCGTAACAGCCA > SRR4302547.3566561/1‑94 (MQ=50)
TTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAA > SRR4302547.5153735/1‑94 (MQ=60)
CTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATC > SRR4302547.1560044/1‑94 (MQ=60)
TTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCA > SRR4302547.3313241/1‑94 (MQ=60)
TTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCA > SRR4302547.5409519/1‑94 (MQ=60)
TCATCTTGCGTATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCAT < SRR4302547.2327740/94‑1 (MQ=60)
ATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATAT < SRR4302547.1529636/94‑1 (MQ=60)
TCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATG < SRR4302547.4164200/94‑1 (MQ=60)
TCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATG < SRR4302547.6307411/94‑1 (MQ=60)
CTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGC < SRR4302547.3473750/94‑1 (MQ=60)
CTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAACCATAAGC > SRR4302547.3817751/1‑94 (MQ=60)
CTTGCGGATCATGAGGATCTCATCCCGGTGCGATCCGACGGTGCCGTAGTAGTTAATTCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGC < SRR4302547.3395964/94‑1 (MQ=60)
CTTGCGGATCATGAGGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGC < SRR4302547.2847963/94‑1 (MQ=60)
GCGGATCATGATGAACTCATCGCGGTTCGTTCCGACGGCTCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTT < SRR4302547.4536449/94‑1 (MQ=60)
GCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTT < SRR4302547.1638598/94‑1 (MQ=60)
CGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTG < SRR4302547.4827593/94‑1 (MQ=60)
CGGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTG > SRR4302547.4507442/1‑94 (MQ=60)
GGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGG > SRR4302547.1876334/1‑94 (MQ=60)
GGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGG < SRR4302547.4976516/94‑1 (MQ=60)
GGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGG > SRR4302547.998724/1‑94 (MQ=60)
GGATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGG < SRR4302547.514381/94‑1 (MQ=60)
GATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGT > SRR4302547.3452509/1‑94 (MQ=60)
GATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGT > SRR4302547.6669843/1‑94 (MQ=60)
ATCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTT > SRR4302547.2269418/1‑94 (MQ=60)
TCATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTT > SRR4302547.4440956/1‑94 (MQ=60)
ATGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCG < SRR4302547.5617469/94‑1 (MQ=60)
TGATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGG < SRR4302547.3720056/94‑1 (MQ=60)
TATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGG < SRR4302547.4958677/94‑1 (MQ=60)
GATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGG < SRR4302547.3610204/94‑1 (MQ=60)
GATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGG < SRR4302547.3849553/94‑1 (MQ=60)
GATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGG < SRR4302547.1079239/94‑1 (MQ=60)
ATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGC > SRR4302547.639711/1‑94 (MQ=60)
ATGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGC > SRR4302547.850480/1‑94 (MQ=60)
TGAACTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCA < SRR4302547.660862/94‑1 (MQ=60)
CTCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACG > SRR4302547.24933/1‑94 (MQ=60)
TCATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGC < SRR4302547.6201216/94‑1 (MQ=60)
CATCGCGGTTCGATCCGACGTCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCG < SRR4302547.5486496/94‑1 (MQ=60)
ATCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGG > SRR4302547.1034246/1‑94 (MQ=60)
TCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGG < SRR4302547.3220655/94‑1 (MQ=60)
TCGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGG > SRR4302547.3783577/1‑94 (MQ=60)
CGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGT > SRR4302547.991234/1‑94 (MQ=60)
CGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGT < SRR4302547.5707898/94‑1 (MQ=60)
CGCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGT > SRR4302547.3438974/1‑94 (MQ=60)
GCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTA > SRR4302547.406356/1‑94 (MQ=60)
GCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTA > SRR4302547.2941519/1‑94 (MQ=60)
GCGGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTA > SRR4302547.598909/1‑94 (MQ=60)
GGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAAC > SRR4302547.1874380/1‑94 (MQ=60)
GGTTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAAC < SRR4302547.2106029/94‑1 (MQ=60)
TTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCG < SRR4302547.1464691/94‑1 (MQ=60)
TTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCG < SRR4302547.1159629/94‑1 (MQ=60)
TTCGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCG < SRR4302547.4882971/94‑1 (MQ=60)
CGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAG > SRR4302547.6418176/1‑94 (MQ=60)
CGATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAG > SRR4302547.4708122/1‑94 (MQ=60)
GATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGT > SRR4302547.5583647/1‑94 (MQ=60)
GATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGT < SRR4302547.1269693/94‑1 (MQ=60)
GATCCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGT > SRR4302547.5839047/1‑94 (MQ=60)
CCGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTAT > SRR4302547.5621792/1‑94 (MQ=60)
CGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATG > SRR4302547.1551484/1‑94 (MQ=60)
CGACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATG < SRR4302547.2501972/94‑1 (MQ=60)
GACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATGA > SRR4302547.4922730/1‑94 (MQ=60)
GACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATGA < SRR4302547.367478/94‑1 (MQ=60)
GACGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATGA > SRR4302547.1804584/1‑94 (MQ=60)
CGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATGAAT < SRR4302547.2034631/94‑1 (MQ=60)
CGGCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATGAAT > SRR4302547.1688326/1‑94 (MQ=60)
GCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATGAATGC < SRR4302547.3689332/94‑1 (MQ=60)
GCGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATGAATGC < SRR4302547.5120541/94‑1 (MQ=60)
|
CCTCCTGTACCTGATCGCGACCTTCATCATCCAGCCAGTTAACGTTCTTCATCTTGCGGATCATGATGAACTCATCGCGGTTCGATCCGACGGTGCCGTAGTAGTTAAAGCCCCAGGCCAGCTGCGCGTAACCGCCAATCATATGCGTTGGTTTCGGGCAAACGCGGGTAACCGAGTTATGAATGC > NC_000913/1536885‑1537070
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
