Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,603,279 |
A→G |
S69G (AGT→GGT) |
b1516 → |
putative LACI‑type transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,603,279 | 0 | A | G | 86.1%
| 543.1
/ 73.3
| 210 | S69G (AGT→GGT) | b1516 | putative LACI‑type transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (11/18); new base G (67/113); total (79/131) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.90e-01 |
Only 100 of 214 total aligned reads displayed.
GCGTGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTG > NC_000913/1603187‑1603368
|
tGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGgtg > 1:3126026/1‑93 (MQ=255)
tGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGgtg > 2:560249/1‑93 (MQ=255)
tGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGgtg > 2:1609571/1‑93 (MQ=255)
gggATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGgtgt < 1:530746/93‑1 (MQ=255)
ggATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGtt < 1:358223/93‑1 (MQ=255)
ggATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGtt < 2:5367680/93‑1 (MQ=255)
aTTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTc < 1:1410439/93‑1 (MQ=255)
aTTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTc > 1:1693915/1‑93 (MQ=255)
tttttACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTg < 2:852674/93‑1 (MQ=255)
ttttACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTgg < 1:5100466/93‑1 (MQ=255)
tACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCa < 1:5648624/93‑1 (MQ=255)
aCCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAg < 1:3217119/93‑1 (MQ=255)
aCCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAg < 1:1005937/93‑1 (MQ=255)
ccAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAgg < 1:6241975/93‑1 (MQ=255)
ccAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAgg > 2:4822257/1‑93 (MQ=255)
ccAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAgg < 1:497/93‑1 (MQ=255)
cAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGt > 2:5648663/1‑93 (MQ=255)
cAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGt < 1:115415/93‑1 (MQ=255)
aGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTa > 2:5943063/1‑93 (MQ=255)
ggTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAg < 2:2238405/93‑1 (MQ=255)
ggTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAg > 1:4584032/1‑93 (MQ=255)
gTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGt < 1:1043891/93‑1 (MQ=255)
tGGCAACGGCGCACACCAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGtt < 1:5793564/93‑1 (MQ=255)
tGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGtt < 1:4902748/93‑1 (MQ=255)
gCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGa < 1:6136135/93‑1 (MQ=255)
aaCGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGAtt < 1:6281707/93‑1 (MQ=255)
aCGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGGTGATta > 1:3306148/1‑93 (MQ=255)
cGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATtaa < 2:1909408/93‑1 (MQ=255)
cGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATtaa < 2:2770406/93‑1 (MQ=255)
cGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATtaa < 1:3262664/93‑1 (MQ=255)
gcgcACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATtaata > 1:2274304/1‑93 (MQ=255)
gcgcACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATtaata > 1:2976030/1‑93 (MQ=255)
cgcACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTGCGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATtaataa < 2:2518662/93‑1 (MQ=255)
gcACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAAc > 1:2955658/1‑93 (MQ=255)
gcACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAAc < 1:319285/93‑1 (MQ=255)
acaacaAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACtt < 1:1341086/93‑1 (MQ=255)
acaacaAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACtt < 2:3559444/93‑1 (MQ=255)
caacaaGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTc > 1:5842768/1‑93 (MQ=255)
caacaaGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTc > 2:5804098/1‑93 (MQ=255)
caacaaGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTc < 1:4447912/93‑1 (MQ=255)
caacaaGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTc < 2:3785185/93‑1 (MQ=255)
caaGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGtc > 2:3711182/1‑93 (MQ=255)
aaGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGtca < 1:3993250/93‑1 (MQ=255)
aGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGtcaa > 2:3044273/1‑93 (MQ=255)
gCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGtcaat > 1:4199636/1‑93 (MQ=255)
caggTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGtcaatc < 2:3249268/91‑1 (MQ=255)
gggTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGtcaatca < 1:1739925/93‑1 (MQ=255)
gggTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGtcaatca > 1:4217468/1‑93 (MQ=255)
gggTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGtcaatca < 1:6450011/93‑1 (MQ=255)
gggTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGtcaatca > 1:4801592/1‑93 (MQ=255)
ggTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGtcaatcaa < 2:416526/93‑1 (MQ=255)
ggTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGtcaatcaa < 2:426361/93‑1 (MQ=255)
gTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAg < 2:6005571/93‑1 (MQ=255)
tAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAgg < 1:4114203/93‑1 (MQ=255)
aaGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGtt > 1:1241425/1‑93 (MQ=255)
agagCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTta < 1:5169891/93‑1 (MQ=255)
agagCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTta < 2:1321318/93‑1 (MQ=255)
gCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATaa < 2:3165283/93‑1 (MQ=255)
gggCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGc > 2:2806705/1‑93 (MQ=255)
gCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCa > 1:2757444/1‑93 (MQ=255)
gCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCa > 1:2527014/1‑93 (MQ=255)
gCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCa > 2:4552324/1‑93 (MQ=255)
cGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCAt < 2:3942455/93‑1 (MQ=255)
cGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCAt < 1:6616650/93‑1 (MQ=255)
aTGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCg < 1:4392680/93‑1 (MQ=255)
tgtgACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGt < 2:5033603/93‑1 (MQ=255)
tgtgACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGt > 2:163184/1‑93 (MQ=255)
ggaacTACGACGGGCCGACAGAACCCGGTCTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGttt < 2:1759843/89‑1 (MQ=255)
gACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTc < 1:4422569/93‑1 (MQ=255)
aCCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCt < 1:1604507/93‑1 (MQ=255)
tACGACGGGCCGTCATATCTCTGTGTACTTGGTCTGGTACAGTTGATTAATTACTTCGTTTATCAAGGTTTTAACGCTACTATCGATTCTGCg > 2:6649530/1‑93 (MQ=255)
tACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCg > 2:2974477/1‑93 (MQ=255)
acgacgGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCgg > 2:5619597/1‑93 (MQ=255)
acgacgGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCgg > 2:1528761/1‑93 (MQ=255)
acgacgGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCgg < 1:928819/93‑1 (MQ=255)
cgacgGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGt < 1:3702176/93‑1 (MQ=255)
gacgGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGtt < 1:2622799/93‑1 (MQ=255)
acgGGCCGACAGACCCCAGTCTTTCTGGTCACGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGttt < 1:1555337/93‑1 (MQ=255)
cgGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTc < 1:6648023/93‑1 (MQ=255)
cgGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTc > 2:2189063/1‑93 (MQ=255)
cgGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTc < 2:4039135/93‑1 (MQ=255)
gggCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCg > 1:2405825/1‑93 (MQ=255)
ccGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCt < 2:755410/93‑1 (MQ=255)
cGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTg > 1:3022824/1‑93 (MQ=255)
cGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTg < 2:3345836/93‑1 (MQ=255)
gACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGa > 2:4932134/1‑93 (MQ=255)
aCAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGAt < 1:3808028/93‑1 (MQ=255)
aCAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGAt < 2:156113/93‑1 (MQ=255)
cAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATg > 2:1433951/1‑93 (MQ=255)
aGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATgg > 1:2074646/1‑93 (MQ=255)
gAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGc < 2:4493358/93‑1 (MQ=255)
aaCCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCt < 1:3628721/93‑1 (MQ=255)
aaCCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCt < 2:4653896/93‑1 (MQ=255)
aaCCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGATATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCt > 2:6142778/1‑93 (MQ=255)
aaCCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCt < 1:757230/93‑1 (MQ=255)
aCCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCtt < 2:4388590/93‑1 (MQ=255)
aCCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCtt > 1:4705722/1‑93 (MQ=255)
aCCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCtt < 2:3500340/93‑1 (MQ=255)
cccGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTtg < 1:5035887/93‑1 (MQ=255)
cccAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTtg < 2:373532/93‑1 (MQ=255)
|
GCGTGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTG > NC_000913/1603187‑1603368
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCGTGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGT > NC_000913/1603186‑1603371
|
GGCGTGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCG < SRR4302547.1513647/94‑1 (MQ=60)
GGCGTGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCG < SRR4302547.1562400/94‑1 (MQ=60)
GCGTGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGG > SRR4302547.3713454/1‑94 (MQ=60)
GCGTGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAG < SRR4302547.385679/94‑1 (MQ=60)
CGTGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGT < SRR4302547.1347685/94‑1 (MQ=60)
GTGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTG > SRR4302547.3188041/1‑94 (MQ=60)
GTGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTG < SRR4302547.1662508/94‑1 (MQ=60)
GTGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGGAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTG > SRR4302547.5937287/1‑94 (MQ=60)
TGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGT > SRR4302547.4756776/1‑94 (MQ=60)
GGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTT < SRR4302547.540333/94‑1 (MQ=60)
GGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTT < SRR4302547.364868/94‑1 (MQ=60)
GATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTC > SRR4302547.1727229/1‑94 (MQ=60)
ATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCT < SRR4302547.1438650/94‑1 (MQ=60)
TTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTG < SRR4302547.722252/94‑1 (MQ=60)
TTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGAGTTTCTGG > SRR4302547.416685/1‑94 (MQ=60)
TTTTACCAGCGGTTGCAACGGCGCACAACAAGCGTGTAAAGAGCTGGGCGTTTATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGT < SRR4302547.4517439/94‑1 (MQ=60)
TTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGT < SRR4302547.5205621/94‑1 (MQ=60)
TTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGT < SRR4302547.2959247/94‑1 (MQ=60)
TTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGT < SRR4302547.5404209/94‑1 (MQ=60)
TTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTC < SRR4302547.4187837/94‑1 (MQ=60)
TTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCA < SRR4302547.1139008/94‑1 (MQ=60)
TACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAG < SRR4302547.5765213/94‑1 (MQ=60)
TACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAG < SRR4302547.2439044/94‑1 (MQ=60)
ACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGG < SRR4302547.3281289/94‑1 (MQ=60)
ACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGG < SRR4302547.1025575/94‑1 (MQ=60)
CCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGT < SRR4302547.507/94‑1 (MQ=60)
CCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGT < SRR4302547.6371648/94‑1 (MQ=60)
CCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGATGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGT > SRR4302547.3570446/1‑94 (MQ=60)
CAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTA < SRR4302547.117514/94‑1 (MQ=60)
CAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTA < SRR4302547.2741054/94‑1 (MQ=60)
CGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAG > SRR4302547.4678899/1‑94 (MQ=60)
GGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGT > SRR4302547.3705760/1‑94 (MQ=60)
GCTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGT < SRR4302547.5407712/94‑1 (MQ=60)
GTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTT < SRR4302547.5193605/94‑1 (MQ=60)
GTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTT < SRR4302547.1064497/94‑1 (MQ=60)
GTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTT < SRR4302547.5042957/94‑1 (MQ=60)
GTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACATACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTT > SRR4302547.2002399/1‑94 (MQ=60)
TGGCAACGGCGCACACCAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTG < SRR4302547.5913408/94‑1 (MQ=60)
TGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTG < SRR4302547.5004279/94‑1 (MQ=60)
TGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTG > SRR4302547.1591905/1‑94 (MQ=60)
TGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTG < SRR4302547.395026/94‑1 (MQ=60)
GCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGAT < SRR4302547.6263423/94‑1 (MQ=60)
AACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTA < SRR4302547.6412217/94‑1 (MQ=60)
AACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGGTGATTA > SRR4302547.3372787/1‑94 (MQ=60)
CGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAAT < SRR4302547.657907/94‑1 (MQ=60)
CGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAAT < SRR4302547.3327913/94‑1 (MQ=60)
GGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATA > SRR4302547.2320300/1‑94 (MQ=60)
GGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATA > SRR4302547.3035247/1‑94 (MQ=60)
GGCGCACAACAAGCGGGGAAAGAGCTGGGCGGTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATA > SRR4302547.3035246/1‑94 (MQ=60)
CGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAAC > SRR4302547.3014486/1‑94 (MQ=60)
GCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACT < SRR4302547.325223/94‑1 (MQ=60)
CACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTT < SRR4302547.304641/94‑1 (MQ=60)
CACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGGTGATTAATAACTT > SRR4302547.1421035/1‑94 (MQ=60)
CACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTT > SRR4302547.4506640/1‑94 (MQ=60)
ACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGGCAGAACCCAGTCTTTATCGTCAGGTAACGTTGCTTAATAACTTC > SRR4302547.1048022/1‑94 (MQ=60)
ACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTC < SRR4302547.4304591/94‑1 (MQ=60)
ACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTC > SRR4302547.5963642/1‑94 (MQ=60)
ACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTC < SRR4302547.1368029/94‑1 (MQ=60)
ACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGATACAGTTGATTAATAACTTC < SRR4302547.6570288/94‑1 (MQ=60)
CAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACTTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCG < SRR4302547.860934/94‑1 (MQ=60)
CAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCG < SRR4302547.5134911/94‑1 (MQ=60)
CAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCG < SRR4302547.4539887/94‑1 (MQ=60)
AACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGT > SRR4302547.5214061/1‑94 (MQ=60)
CAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCA > SRR4302547.3304654/1‑94 (MQ=60)
AAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAA < SRR4302547.4074436/94‑1 (MQ=60)
AGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAAT > SRR4302547.4285291/1‑94 (MQ=60)
cggcaaaagcGCTGGGCGTTGATGCGCCCTACGACGGGCCGACAGACCCAGGTGTTTTTGGTCAGGTACAGTTGATTAAAAACTCCGTCAATCA < SRR4302547.5380280/84‑1 (MQ=46)
CGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCA > SRR4302547.4303566/1‑94 (MQ=60)
CGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCA > SRR4302547.4901086/1‑94 (MQ=60)
GGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAA < SRR4302547.1774145/94‑1 (MQ=60)
GGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAA < SRR4302547.6584384/94‑1 (MQ=60)
GTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGG > SRR4302547.4854191/1‑94 (MQ=60)
TAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGT < SRR4302547.4950398/94‑1 (MQ=60)
TAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGT < SRR4302547.4197818/94‑1 (MQ=60)
AAAGAGCTGGGCGTTTATGTGACCTACGACGGGCCGACAGCACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGTTT < SRR4302547.1768327/94‑1 (MQ=60)
AAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTT > SRR4302547.1266490/1‑94 (MQ=60)
AAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTT < SRR4302547.2548686/94‑1 (MQ=60)
AAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTT > SRR4302547.1655162/1‑94 (MQ=60)
AGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTAT < SRR4302547.5276337/94‑1 (MQ=60)
AGCTGGGCGTTGCTGTGACCTACGCCGGGCCGACAGAACCCAGTGTTTCTGTTCAGATACAGATGATTAATAAATTCGTCAATCAAGGTTATAA > SRR4302547.6098426/1‑94 (MQ=60)
GGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCA < SRR4302547.540790/94‑1 (MQ=60)
GGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCA > SRR4302547.2812717/1‑94 (MQ=60)
GGCGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCA > SRR4302547.2578085/1‑94 (MQ=60)
CGTTGATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATT < SRR4302547.6754368/94‑1 (MQ=60)
GATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCG < SRR4302547.4777809/94‑1 (MQ=60)
ATGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGT < SRR4302547.4483077/94‑1 (MQ=60)
TGTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGCACAGTTGCTTAATCACTTCGTCAATCACGGTTATAACGCCCTTATCGTT > SRR4302547.3000196/1‑94 (MQ=60)
GTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTT < SRR4302547.3312521/94‑1 (MQ=60)
GTGACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTT < SRR4302547.6770878/94‑1 (MQ=60)
GACCTACGACGGGCCGACAGAACCTGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCT < SRR4302547.6317377/94‑1 (MQ=60)
GACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCT < SRR4302547.4513925/94‑1 (MQ=60)
GACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCT < SRR4302547.3242437/94‑1 (MQ=60)
ACCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTG < SRR4302547.1636330/94‑1 (MQ=60)
ACCTACGACGGGCCGACAGAACCAAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTG < SRR4302547.4297773/94‑1 (MQ=60)
CCTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGC < SRR4302547.648347/94‑1 (MQ=60)
CTACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCG < SRR4302547.1305049/94‑1 (MQ=60)
ACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGT < SRR4302547.946767/94‑1 (MQ=60)
ACGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGT > SRR4302547.3658720/1‑94 (MQ=60)
CGACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTT < SRR4302547.3777742/94‑1 (MQ=60)
GACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTT > SRR4302547.3259651/1‑94 (MQ=60)
GACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTT > SRR4302547.1178753/1‑94 (MQ=60)
GACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTT < SRR4302547.2675633/94‑1 (MQ=60)
GACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTT < SRR4302547.5873038/94‑1 (MQ=60)
ACGGGCCGACAGACCCCAGTCTTTCTGGTCACGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTC < SRR4302547.1586281/94‑1 (MQ=60)
ACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTC < SRR4302547.4270411/94‑1 (MQ=60)
ACGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTC < SRR4302547.2138619/94‑1 (MQ=60)
CGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCG < SRR4302547.6786498/94‑1 (MQ=60)
CGGGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCG > SRR4302547.2454536/1‑94 (MQ=60)
GGCCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCC > SRR4302547.2765184/1‑94 (MQ=60)
GCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCT > SRR4302547.6405211/1‑94 (MQ=60)
CCGACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTG > SRR4302547.3082933/1‑94 (MQ=60)
ACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATG < SRR4302547.3885647/94‑1 (MQ=60)
ACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATG < SRR4302547.1454176/94‑1 (MQ=60)
ACAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATG < SRR4302547.3358367/94‑1 (MQ=60)
CAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGG < SRR4302547.260196/94‑1 (MQ=60)
CAGAACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGG > SRR4302547.2116037/1‑94 (MQ=60)
AACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTT > SRR4302547.4803168/1‑94 (MQ=60)
AACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTT < SRR4302547.3702744/94‑1 (MQ=60)
AACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTT < SRR4302547.771504/94‑1 (MQ=60)
ACCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTG > SRR4302547.455941/1‑94 (MQ=60)
CCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGT < SRR4302547.3135149/94‑1 (MQ=60)
CCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGT < SRR4302547.5139907/94‑1 (MQ=60)
CCCGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGT > SRR4302547.4908538/1‑94 (MQ=60)
CGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGT < SRR4302547.3423297/94‑1 (MQ=60)
CGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGT < SRR4302547.4744614/94‑1 (MQ=60)
CGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGT < SRR4302547.4500058/94‑1 (MQ=60)
CGGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGT > SRR4302547.5817181/1‑94 (MQ=60)
|
GGCGTGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAGGTTATAACGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGT > NC_000913/1603186‑1603371
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
