Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,764,440 |
A→G |
V757A (GTC→GCC) |
ydiJ ← |
putative oxidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,764,440 | 0 | A | G | 84.6%
| 534.9
/ 84.5
| 223 | V757A (GTC→GCC) | ydiJ | putative oxidase |
| Reads supporting (aligned to +/- strand): ref base A (10/24); new base G (81/106); total (91/132) |
| Fisher's exact test for biased strand distribution p-value = 1.84e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.69e-01 |
Only 100 of 234 total aligned reads displayed.
TGCGCGCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTTTTC > NC_000913/1764348‑1764529
|
cgcTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGa > 2:1421454/1‑93 (MQ=255)
cgcTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGa < 1:2154231/93‑1 (MQ=255)
gcTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAc > 1:2301967/1‑93 (MQ=255)
gcTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGAc > 2:633576/1‑93 (MQ=255)
cTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAca < 1:2702906/93‑1 (MQ=255)
tttCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAcag > 1:2264156/1‑93 (MQ=255)
tttCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAcag > 2:4690801/1‑93 (MQ=255)
tttCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCATCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAcag < 2:1455877/93‑1 (MQ=255)
ttCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGAcagc < 1:5011007/93‑1 (MQ=255)
tctgctctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAcagca < 1:3260714/93‑1 (MQ=255)
ctgctctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAcagcag > 1:194683/1‑93 (MQ=255)
ctgctctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGAcagcag < 2:6205590/93‑1 (MQ=255)
tgctctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACagcagc < 1:5281505/93‑1 (MQ=255)
tgctctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACagcagc > 2:2829273/1‑93 (MQ=255)
gctctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCg < 1:4612882/93‑1 (MQ=255)
ctctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCgg < 2:3169951/93‑1 (MQ=255)
tctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGc > 2:6479688/1‑93 (MQ=255)
tctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGc > 1:578997/1‑93 (MQ=255)
tgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCaa < 1:5205880/93‑1 (MQ=255)
tgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCCAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCaa > 1:6528344/1‑93 (MQ=255)
aTTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATc < 1:3116570/93‑1 (MQ=255)
aTTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATc > 1:2056280/1‑93 (MQ=255)
aTTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATc < 1:4409583/93‑1 (MQ=255)
aTTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATc < 2:4822995/93‑1 (MQ=255)
tGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCaa > 1:5167071/1‑93 (MQ=255)
gagagaTTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAAc > 1:755885/1‑93 (MQ=255)
gagagaTTCAAGCTGTTCCAACGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAAc > 1:6397362/1‑93 (MQ=255)
agagaTTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAAcc > 2:5702679/1‑93 (MQ=255)
gagaTTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCa < 1:1590181/93‑1 (MQ=255)
gagaTTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCa > 2:4480643/1‑93 (MQ=255)
agaTTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCAt < 1:364486/93‑1 (MQ=255)
aTTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGc < 1:1806288/93‑1 (MQ=255)
ttCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGcc < 1:5632267/93‑1 (MQ=255)
ttCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGcc > 1:478289/1‑93 (MQ=255)
cAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGa > 2:5504242/1‑93 (MQ=255)
cAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGa < 2:2774550/93‑1 (MQ=255)
aGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGata > 2:5677455/1‑93 (MQ=255)
aGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGata > 2:5318694/1‑93 (MQ=255)
cTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATg < 1:6459877/93‑1 (MQ=255)
gTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGtt > 1:2508421/1‑93 (MQ=255)
gTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGtt > 2:614831/1‑93 (MQ=255)
gTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGtt < 1:606691/93‑1 (MQ=255)
tCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGtttt > 1:892788/1‑93 (MQ=255)
tCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGtttt > 2:592647/1‑93 (MQ=255)
ccAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGttttt < 2:4094524/93‑1 (MQ=255)
ccAGCGTCATGTGTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGttttt < 1:1759085/93‑1 (MQ=255)
aGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTcc > 2:3645530/1‑93 (MQ=255)
aGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTcc < 1:5441781/93‑1 (MQ=255)
aGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTcc < 1:6276828/93‑1 (MQ=255)
cGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCga < 2:1292151/93‑1 (MQ=255)
cGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCga < 1:5909289/93‑1 (MQ=255)
tCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCgaga < 2:1296445/93‑1 (MQ=255)
tCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCgaga > 2:3151868/1‑93 (MQ=255)
tCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCgaga > 1:1255109/1‑93 (MQ=255)
tCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCgaga > 1:3419039/1‑93 (MQ=255)
gTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGttt > 1:3515521/1‑93 (MQ=255)
tttGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTg < 1:2537280/93‑1 (MQ=255)
ttGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTgc < 1:3777087/93‑1 (MQ=255)
tGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTgcg > 1:2795995/1‑93 (MQ=255)
gAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCAcc < 1:4482249/93‑1 (MQ=255)
gAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTACGAGAGTTTGCGCAcc > 1:2892398/1‑93 (MQ=255)
gCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAg < 2:43824/93‑1 (MQ=255)
gCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAg < 2:1993088/93‑1 (MQ=255)
ggaagCCCCACCATTTGTTGTTGTAGCAAGGGGGCCGACAGCAGCGGCGAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGc < 2:4908191/89‑1 (MQ=255)
gATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCg > 2:2141140/1‑93 (MQ=255)
aTGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCgg > 1:975086/1‑93 (MQ=255)
tGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGc < 2:1516854/93‑1 (MQ=255)
tGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGc > 1:3944049/1‑93 (MQ=255)
tGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGc < 2:4033551/93‑1 (MQ=255)
ccccACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTg < 1:5481251/93‑1 (MQ=255)
cccACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTgg < 1:5401266/93‑1 (MQ=255)
cccACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTgg > 1:3829036/1‑93 (MQ=255)
cccACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTgg > 2:6632246/1‑93 (MQ=255)
ccaccaTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGt < 1:6589077/93‑1 (MQ=255)
caccaTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGtt < 2:6016370/93‑1 (MQ=255)
caccaTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGtt < 2:495875/93‑1 (MQ=255)
accaTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTa > 2:3257/1‑93 (MQ=255)
accaTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGGTa > 2:2524867/1‑93 (MQ=255)
ccaTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTaa < 2:790749/93‑1 (MQ=255)
caTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAAt < 1:3003949/93‑1 (MQ=255)
caTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAAt < 2:1172637/93‑1 (MQ=255)
aTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATg > 1:1066266/1‑93 (MQ=255)
aTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATg < 2:5400099/93‑1 (MQ=255)
aTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATg > 2:2460273/1‑93 (MQ=255)
ttgttgtAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATgaagaa < 2:2198286/93‑1 (MQ=255)
gttgtAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGt > 1:6165825/1‑93 (MQ=255)
tgtAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGATTGCGCACCAGCGGCTGGTTTATGAAGAAGTTa > 1:2053165/1‑93 (MQ=255)
gtAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTaa < 1:1764188/93‑1 (MQ=255)
tAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTaaa < 2:1773040/93‑1 (MQ=255)
tAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGGTAATGAAGAAGTTaaa > 1:6440891/1‑93 (MQ=255)
tAGCGAGGGCGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTaaa < 1:1484815/93‑1 (MQ=255)
gaGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTaaa < 1:4635106/92‑1 (MQ=255)
aGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAg < 1:4207805/93‑1 (MQ=255)
aGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAg < 1:1552067/93‑1 (MQ=255)
cGAGGGGTCCGACAGCAGCGGCAAATCAACCATGCAGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGt < 1:4733010/93‑1 (MQ=255)
gAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGtt > 1:4945413/1‑93 (MQ=255)
gAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGtt > 1:1411691/1‑93 (MQ=255)
gAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGtt < 1:3594901/93‑1 (MQ=255)
ggggGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGtttt < 2:5649251/93‑1 (MQ=255)
ggggCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTTTTc < 2:1625365/93‑1 (MQ=255)
|
TGCGCGCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTTTTC > NC_000913/1764348‑1764529
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGCGCGCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTTTTCG > NC_000913/1764347‑1764530
|
GTGCGCGCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGG < SRR4302547.4420184/94‑1 (MQ=60)
TGCGCGCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGC < SRR4302547.5507623/94‑1 (MQ=60)
GCGCGCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCC < SRR4302547.3556658/94‑1 (MQ=60)
CGCGCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCG < SRR4302547.1845050/94‑1 (MQ=60)
CGCGCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCG < SRR4302547.2195755/94‑1 (MQ=60)
CGCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAC < SRR4302547.2197254/94‑1 (MQ=60)
CGCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAC > SRR4302547.2348615/1‑94 (MQ=60)
GCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACA > SRR4302547.4670452/1‑94 (MQ=60)
GCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACA < SRR4302547.1901972/94‑1 (MQ=60)
CTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAG < SRR4302547.2757149/94‑1 (MQ=60)
CTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAG > SRR4302547.2309915/1‑94 (MQ=60)
CTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAG > SRR4302547.4163299/1‑94 (MQ=60)
TTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCA < SRR4302547.3522263/94‑1 (MQ=60)
TTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCA < SRR4302547.660374/94‑1 (MQ=60)
TTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCA > SRR4302547.2872106/1‑94 (MQ=60)
TTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCA < SRR4302547.5114603/94‑1 (MQ=60)
TCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAG < SRR4302547.3325912/94‑1 (MQ=60)
TCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAG > SRR4302547.198322/1‑94 (MQ=60)
CTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGC < SRR4302547.1533261/94‑1 (MQ=60)
TGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCG < SRR4302547.5390447/94‑1 (MQ=60)
TGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCG > SRR4302547.3625717/1‑94 (MQ=60)
TGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCG < SRR4302547.1217548/94‑1 (MQ=60)
GCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGG < SRR4302547.4708368/94‑1 (MQ=60)
CTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGC > SRR4302547.589378/1‑94 (MQ=60)
CTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGC > SRR4302547.6126798/1‑94 (MQ=60)
CTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCCAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAA > SRR4302547.6664232/1‑94 (MQ=60)
TGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAA < SRR4302547.5313004/94‑1 (MQ=60)
TGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAA < SRR4302547.1458694/94‑1 (MQ=60)
TGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGACGGGACCGACAGCAGCGGCAAA > SRR4302547.3066259/1‑94 (MQ=60)
GCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAaatggtggg < SRR4302547.4787954/94‑10 (MQ=60)
CATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATC > SRR4302547.2097305/1‑94 (MQ=60)
CATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCACATC > SRR4302547.2820147/1‑94 (MQ=60)
ATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCA < SRR4302547.4500471/94‑1 (MQ=60)
ATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCA < SRR4302547.3178342/94‑1 (MQ=60)
ATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCA < SRR4302547.3676920/94‑1 (MQ=60)
TTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAA > SRR4302547.5273455/1‑94 (MQ=60)
TGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAAC > SRR4302547.770134/1‑94 (MQ=60)
TGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAAC < SRR4302547.4824364/94‑1 (MQ=60)
TGAGAGATTCAAGCTGTTCCAACGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAAC > SRR4302547.6530817/1‑94 (MQ=60)
GAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCAT < SRR4302547.5642601/94‑1 (MQ=60)
GAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCAT < SRR4302547.1621772/94‑1 (MQ=60)
GAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCAT < SRR4302547.1602030/94‑1 (MQ=60)
GAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCAT < SRR4302547.951390/94‑1 (MQ=60)
AGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATG < SRR4302547.371257/94‑1 (MQ=60)
GATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGC < SRR4302547.4215719/94‑1 (MQ=60)
ATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCC > SRR4302547.487074/1‑94 (MQ=60)
ATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCC > SRR4302547.3425938/1‑94 (MQ=60)
ATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCC < SRR4302547.1841989/94‑1 (MQ=60)
ATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCC > SRR4302547.5265260/1‑94 (MQ=60)
TTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCG < SRR4302547.27594/94‑1 (MQ=60)
TTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCG < SRR4302547.5748506/94‑1 (MQ=60)
AAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATA > SRR4302547.5501025/1‑94 (MQ=60)
AGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATAT < SRR4302547.6673085/94‑1 (MQ=60)
AGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATAT > SRR4302547.3880561/1‑94 (MQ=60)
GCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATG > SRR4302547.1826157/1‑94 (MQ=60)
CTGTTCCAGCGTCATGTTTGCGGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGT < SRR4302547.4014563/94‑1 (MQ=60)
CTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGT < SRR4302547.6594409/94‑1 (MQ=60)
TGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTT < SRR4302547.5549163/94‑1 (MQ=60)
TGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTT > SRR4302547.2559134/1‑94 (MQ=60)
TGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTT < SRR4302547.3533133/94‑1 (MQ=60)
TGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTT < SRR4302547.6591716/94‑1 (MQ=60)
GTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTT < SRR4302547.617969/94‑1 (MQ=60)
TTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTT > SRR4302547.909954/1‑94 (MQ=60)
CCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTC < SRR4302547.2362165/94‑1 (MQ=60)
CCAGCGTCATGTGTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTC < SRR4302547.1793939/94‑1 (MQ=60)
CAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCC < SRR4302547.2096914/94‑1 (MQ=60)
AGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCG < SRR4302547.5554233/94‑1 (MQ=60)
AGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCG < SRR4302547.508025/94‑1 (MQ=60)
AGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCG < SRR4302547.6407231/94‑1 (MQ=60)
CGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAG < SRR4302547.6031663/94‑1 (MQ=60)
CGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAG > SRR4302547.5288594/1‑94 (MQ=60)
CGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAG < SRR4302547.6561735/94‑1 (MQ=60)
GTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGA > SRR4302547.1280419/1‑94 (MQ=60)
GTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGA > SRR4302547.1795558/1‑94 (MQ=60)
GTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGA > SRR4302547.3488654/1‑94 (MQ=60)
TCATGTTTGCCGAGCGATGCCCCACGATTTGTTGGTGTAGCGAGGGGCCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAG < SRR4302547.25815/94‑1 (MQ=60)
ATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTT > SRR4302547.1696703/1‑94 (MQ=60)
ATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTT < SRR4302547.1330507/94‑1 (MQ=60)
ATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTT < SRR4302547.3837968/94‑1 (MQ=60)
TGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTT > SRR4302547.3587290/1‑94 (MQ=60)
TGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTT < SRR4302547.554624/94‑1 (MQ=60)
GTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTG < SRR4302547.6393408/94‑1 (MQ=60)
GTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTG < SRR4302547.2332009/94‑1 (MQ=60)
GCTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTG < SRR4302547.4502260/94‑1 (MQ=60)
TTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGC < SRR4302547.2588544/94‑1 (MQ=60)
TTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGC > SRR4302547.2070533/1‑94 (MQ=60)
TTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCG < SRR4302547.3083568/94‑1 (MQ=60)
TTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCG < SRR4302547.3854116/94‑1 (MQ=60)
TTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCG > SRR4302547.2851957/1‑94 (MQ=60)
TGCCGAGAGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTCTTCCGAGAGTTTGCGA > SRR4302547.994114/1‑94 (MQ=60)
GCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCA > SRR4302547.4722341/1‑94 (MQ=60)
CGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTACGAGAGTTTGCGCACC > SRR4302547.2950085/1‑94 (MQ=60)
GAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCA < SRR4302547.4574848/94‑1 (MQ=60)
AGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAG < SRR4302547.6069912/94‑1 (MQ=60)
GATGCCCCACCATTTGTTGTTGTAGCGAGGGTGCCGACAGCAGCGGCAAATCAACCATTCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGG < SRR4302547.1500224/94‑1 (MQ=60)
GATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGG > SRR4302547.994047/1‑94 (MQ=60)
ATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGC > SRR4302547.4024266/1‑94 (MQ=60)
CCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGG > SRR4302547.3907028/1‑94 (MQ=60)
CCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGG < SRR4302547.5594434/94‑1 (MQ=60)
CCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGT < SRR4302547.5512901/94‑1 (MQ=60)
TCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGGT > SRR4302547.5145133/1‑94 (MQ=60)
CCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTT > SRR4302547.6383463/1‑94 (MQ=60)
CCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTT < SRR4302547.6726238/94‑1 (MQ=60)
CACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTA > SRR4302547.2406193/1‑94 (MQ=60)
ACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAA < SRR4302547.6592103/94‑1 (MQ=60)
CCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGATTGCGCACCAGCGGCTGGGTAAT > SRR4302547.4339943/1‑94 (MQ=60)
CATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATG > SRR4302547.5675591/1‑94 (MQ=60)
CATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATG > SRR4302547.1087494/1‑94 (MQ=60)
CATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATG < SRR4302547.3063706/94‑1 (MQ=60)
CATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATG < SRR4302547.5375434/94‑1 (MQ=60)
ATTTCTTGGTGTAGCCAGGGGACCGACAGCAGCGCTAAATCATCAATGCCGATATGTTTTTCCGGGAGTTTGCGCGCCAGCGGCGGGTGAATGA < SRR4302547.5013704/94‑1 (MQ=34)
TTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAA < SRR4302547.3743208/94‑1 (MQ=60)
TTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAG < SRR4302547.4864176/94‑1 (MQ=60)
TTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGGTAATGAAG > SRR4302547.6221743/1‑94 (MQ=60)
TGTTGTAGCGAGGGGTCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGT < SRR4302547.5784273/94‑1 (MQ=60)
TGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGT < SRR4302547.5476314/94‑1 (MQ=60)
TGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGT > SRR4302547.5923672/1‑94 (MQ=60)
TGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGT > SRR4302547.6293803/1‑94 (MQ=60)
GTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTT < SRR4302547.260655/94‑1 (MQ=60)
GTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTT < SRR4302547.3029563/94‑1 (MQ=60)
TTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTA < SRR4302547.6768393/94‑1 (MQ=60)
TTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGATTGCGCACCAGCGGCTGGTTTATGAAGAAGTTA > SRR4302547.2094108/1‑94 (MQ=60)
GTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAA < SRR4302547.1799180/94‑1 (MQ=60)
GTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGGTAATGAAGAAGTTAAA > SRR4302547.6575128/1‑94 (MQ=60)
TAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAG < SRR4302547.4677569/94‑1 (MQ=60)
TAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAG > SRR4302547.73997/1‑94 (MQ=60)
TAGCGAGGGCGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAG < SRR4302547.1514440/94‑1 (MQ=60)
GAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAG < SRR4302547.4731119/94‑1 (MQ=60)
AGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGG < SRR4302547.4293674/94‑1 (MQ=60)
AGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGG < SRR4302547.1582959/94‑1 (MQ=60)
AGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGGTAATGAAGAAGTTAAAGG > SRR4302547.4912844/1‑94 (MQ=60)
GCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGT < SRR4302547.226107/94‑1 (MQ=60)
GCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGT < SRR4302547.3187754/94‑1 (MQ=60)
CGAGGGGTCCGACAGCAGCGGCAAATCAACCATGCAGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTT < SRR4302547.4831104/94‑1 (MQ=60)
CGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTT > SRR4302547.5047834/1‑94 (MQ=60)
CGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTT > SRR4302547.1439930/1‑94 (MQ=60)
CGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTT > SRR4302547.6453054/1‑94 (MQ=60)
GAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTTT > SRR4302547.886469/1‑94 (MQ=60)
GAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTTT < SRR4302547.3668222/94‑1 (MQ=60)
GGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTTTTC < SRR4302547.2142793/94‑1 (MQ=60)
GGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTTTTCG < SRR4302547.1730568/94‑1 (MQ=60)
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GTGCGCGCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTTTTCG > NC_000913/1764347‑1764530
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
