Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,788,259 G→A T337M (ACG→ATG)  b1706 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,788,2590GA84.2% 546.7 / 78.3 202T337M (ACG→ATG) b1706hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (14/18);  new base A (73/97);  total (87/115)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.95e-01

Only 100 of 206 total aligned reads displayed.

AGCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATCTA  >  NC_000913/1788169‑1788349
                                                                                          |                                                                                          
aGCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTc                                                                                          >  2:4002594/1‑93 (MQ=255)
 gCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCa                                                                                         >  2:1582316/1‑93 (MQ=255)
 gCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCa                                                                                         <  1:2885038/93‑1 (MQ=255)
 gCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCa                                                                                         <  1:1926360/93‑1 (MQ=255)
 gCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCa                                                                                         >  1:3177557/1‑93 (MQ=255)
   aTGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATg                                                                                       >  1:4707671/1‑93 (MQ=255)
   aTGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATg                                                                                       >  2:3412650/1‑93 (MQ=255)
    tGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGa                                                                                      <  2:1155474/93‑1 (MQ=255)
     gCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGaa                                                                                     >  1:4683301/1‑93 (MQ=255)
     gCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTACATCATGaa                                                                                     >  1:3315758/1‑93 (MQ=255)
       ggAATGTGCGGGGATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCTTCTTTTTGCTCCATCATGAAGc                                                                                   >  2:1084804/1‑93 (MQ=255)
        gAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGcc                                                                                  >  2:3559395/1‑93 (MQ=255)
        gAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGcc                                                                                  >  2:3008483/1‑93 (MQ=255)
        gAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGcc                                                                                  >  1:4146192/1‑93 (MQ=255)
         aaTGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGccc                                                                                 <  2:6626763/93‑1 (MQ=255)
                  gTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGc                                                                        <  2:3659015/93‑1 (MQ=255)
                  gTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGc                                                                        >  2:710470/1‑93 (MQ=255)
                    ataATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCg                                                                      >  2:6017572/1‑93 (MQ=255)
                     taATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGc                                                                     >  1:3973528/1‑93 (MQ=255)
                       aTCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTCATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCAt                                                                   <  2:4674908/93‑1 (MQ=255)
                        tCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATc                                                                  >  2:2730314/1‑93 (MQ=255)
                        tCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATc                                                                  >  1:4715958/1‑93 (MQ=255)
                          gCTGCGCTCTCGTGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCg                                                                >  1:6207036/1‑93 (MQ=255)
                           cTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGt                                                               <  2:5012511/93‑1 (MQ=255)
                            tGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGtt                                                              <  1:3054966/93‑1 (MQ=255)
                            tGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGtt                                                              <  2:2812832/93‑1 (MQ=255)
                            tGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGtt                                                              <  1:2278593/93‑1 (MQ=255)
                              cgcTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTtct                                                            >  1:2976884/1‑93 (MQ=255)
                               gcTGTCGCTCCATCAGACTGAATAATTCATTCAGTAGCGCGGTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCCGATCCGTtctc                                                           <  1:2159881/93‑1 (MQ=255)
                                ctctCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTcc                                                          >  2:4306079/1‑93 (MQ=255)
                                  ctcGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCAt                                                        >  1:4614076/1‑93 (MQ=255)
                                  ctcGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCAt                                                        <  1:4999960/93‑1 (MQ=255)
                                       gcCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGc                                                   <  1:3160701/93‑1 (MQ=255)
                                         cATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGt                                                 >  2:340704/1‑93 (MQ=255)
                                           tCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTca                                               <  2:4062064/93‑1 (MQ=255)
                                            cAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTcaa                                              >  2:6218683/1‑93 (MQ=255)
                                             aGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTcaac                                             <  1:6286004/93‑1 (MQ=255)
                                             aGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTcaac                                             <  2:5280903/93‑1 (MQ=255)
                                             aGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTcaac                                             >  1:2013320/1‑93 (MQ=255)
                                             aGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTcaac                                             >  2:4941151/1‑93 (MQ=255)
                                              gACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTcaaca                                            >  1:2079132/1‑93 (MQ=255)
                                               aCTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCCGTTTCTGCCGCATCCGTTCTCCATAATGCGTcaacaa                                           >  2:3145269/1‑93 (MQ=255)
                                                cTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACaaa                                          <  2:1295700/93‑1 (MQ=255)
                                                 tGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACaaaa                                         >  2:3869023/1‑93 (MQ=255)
                                                   aataatTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAAcc                                       <  1:3708933/93‑1 (MQ=255)
                                                   aataatTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAAcc                                       >  1:2164744/1‑93 (MQ=255)
                                                    ataatTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACct                                      >  1:886331/1‑93 (MQ=255)
                                                    ataatTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACct                                      <  2:1885582/93‑1 (MQ=255)
                                                     taatTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACctg                                     <  1:4905042/93‑1 (MQ=255)
                                                      aatTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACctgc                                    <  2:1564647/93‑1 (MQ=255)
                                                      aatTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACctgc                                    <  2:2587689/93‑1 (MQ=255)
                                                      aatTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACctgc                                    <  1:2437156/93‑1 (MQ=255)
                                                      aatTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACctgc                                    <  2:4842410/93‑1 (MQ=255)
                                                      aatTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACctgc                                    >  2:5745517/1‑93 (MQ=255)
                                                       attcattcAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACctgct                                   >  2:5670491/1‑93 (MQ=255)
                                                       attcattcAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACctgct                                   <  1:1671386/93‑1 (MQ=255)
                                                         tcattcaGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGa                                 >  2:2434190/1‑93 (MQ=255)
                                                          cattcaGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGAt                                <  1:6069962/93‑1 (MQ=255)
                                                           attcaGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATa                               <  2:3379160/93‑1 (MQ=255)
                                                           attcaGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATa                               >  1:3605852/1‑93 (MQ=255)
                                                            ttcaGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAg                              <  1:1197281/93‑1 (MQ=255)
                                                            ttcaGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAg                              >  1:251846/1‑93 (MQ=255)
                                                             tcaGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGc                             >  2:1660111/1‑93 (MQ=255)
                                                             tcaGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGc                             <  1:5927649/93‑1 (MQ=255)
                                                              caGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTTTCCATAATGCGTCAACAAAACCTGCTGATAGCt                            <  2:6481331/93‑1 (MQ=255)
                                                              caGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCt                            <  2:5628632/93‑1 (MQ=255)
                                                               aGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTg                           <  2:162602/93‑1 (MQ=255)
                                                               aGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTg                           <  2:6118889/93‑1 (MQ=255)
                                                                gTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTgc                          >  1:5385524/1‑92 (MQ=255)
                                                                    cgcgTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAg                      <  2:4725686/93‑1 (MQ=255)
                                                                    cgcgTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAg                      <  2:641186/93‑1 (MQ=255)
                                                                      cgTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAggg                    <  2:2241123/93‑1 (MQ=255)
                                                                      cgTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAggg                    <  2:5411408/93‑1 (MQ=255)
                                                                      cgTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAggg                    >  1:1393846/1‑93 (MQ=255)
                                                                       gTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGc                   >  1:432617/1‑93 (MQ=255)
                                                                       gTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGc                   >  1:4052896/1‑93 (MQ=255)
                                                                        ttATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGcc                  <  1:710470/93‑1 (MQ=255)
                                                                         tATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCt                 <  1:6526343/93‑1 (MQ=255)
                                                                           tCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCa               <  1:5548525/93‑1 (MQ=255)
                                                                           tCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCa               >  1:5676444/1‑93 (MQ=255)
                                                                            ccTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCAt              >  1:5845493/1‑93 (MQ=255)
                                                                             ctctTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCAtt             >  1:5790692/1‑93 (MQ=255)
                                                                               ctTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCa           <  2:3258431/93‑1 (MQ=255)
                                                                               ctTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCa           <  2:2571775/93‑1 (MQ=255)
                                                                                tttttGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAg          >  2:1983669/1‑93 (MQ=255)
                                                                                tttttGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAg          >  2:6300964/1‑93 (MQ=255)
                                                                                tttttGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAg          <  2:1201016/93‑1 (MQ=255)
                                                                                tttttGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAg          <  1:1022105/93‑1 (MQ=255)
                                                                                tttttGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAg          <  1:5199620/93‑1 (MQ=255)
                                                                                tttttGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAg          >  1:1517779/1‑93 (MQ=255)
                                                                                 ttttGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAgg         <  1:1814477/93‑1 (MQ=255)
                                                                                 ttttGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAgg         <  1:445057/93‑1 (MQ=255)
                                                                                 ttttGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAgg         >  2:803359/1‑93 (MQ=255)
                                                                                   ttGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGc       >  1:3798917/1‑93 (MQ=255)
                                                                                    tGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCa      <  2:5585955/93‑1 (MQ=255)
                                                                                     gCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCATGGCAt     >  2:5955221/1‑93 (MQ=255)
                                                                                     gCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCAt     <  2:3974689/93‑1 (MQ=255)
                                                                                       tCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATCt   <  2:4105857/93‑1 (MQ=255)
                                                                                       tCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATCt   >  1:2055596/1‑93 (MQ=255)
                                                                                        ccGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATCTa  >  2:3454569/1‑93 (MQ=255)
                                                                                          |                                                                                          
AGCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATCTA  >  NC_000913/1788169‑1788349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCAGCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATCTAC  >  NC_000913/1788167‑1788350
                                                                                            |                                                                                           
TCAGCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCAT                                                                                            <  SRR4302547.4395692/94‑1 (MQ=60)
TCAGCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCAT                                                                                            <  SRR4302547.5516811/94‑1 (MQ=60)
 CAGCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATC                                                                                           >  SRR4302547.2207429/1‑94 (MQ=60)
  AGCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCA                                                                                          >  SRR4302547.5670351/1‑94 (MQ=60)
  AGCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCA                                                                                          >  SRR4302547.3240851/1‑94 (MQ=60)
   GCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCAT                                                                                         <  SRR4302547.2942616/94‑1 (MQ=60)
   GCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCAT                                                                                         <  SRR4302547.4746363/94‑1 (MQ=60)
   GCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCAT                                                                                         <  SRR4302547.1964525/94‑1 (MQ=60)
   GCATGCGGAATGTGAGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCAT                                                                                         >  SRR4302547.1795766/1‑94 (MQ=60)
    CATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATG                                                                                        >  SRR4302547.4805158/1‑94 (MQ=60)
      TGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAA                                                                                      >  SRR4302547.4780308/1‑94 (MQ=60)
      TGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTACATCATGAA                                                                                      >  SRR4302547.3382662/1‑94 (MQ=60)
       GCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAG                                                                                     >  SRR4302547.3113004/1‑94 (MQ=60)
         GGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCC                                                                                   >  SRR4302547.4230596/1‑94 (MQ=60)
         GGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCC                                                                                   >  SRR4302547.2093869/1‑94 (MQ=60)
          GAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCC                                                                                  <  SRR4302547.6242861/94‑1 (MQ=60)
             TGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGT                                                                               <  SRR4302547.22373/94‑1 (MQ=60)
             TGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGT                                                                               <  SRR4302547.4303376/94‑1 (MQ=60)
              GTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTT                                                                              <  SRR4302547.5896785/94‑1 (MQ=60)
                GCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTC                                                                            <  SRR4302547.2100028/94‑1 (MQ=60)
                GCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTC                                                                            >  SRR4302547.5561926/1‑94 (MQ=60)
                 CGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCT                                                                           <  SRR4302547.375666/94‑1 (MQ=60)
                  GGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTG                                                                          <  SRR4302547.272436/94‑1 (MQ=60)
                    GTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCC                                                                        <  SRR4302547.3888855/94‑1 (MQ=60)
                    GTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATACTCTTTTTGCTTCATCATGAAGCCCAGTTTCTGCC                                                                        >  SRR4302547.4948777/1‑94 (MQ=60)
                     TATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCG                                                                       <  SRR4302547.3196321/94‑1 (MQ=60)
                      ATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGC                                                                      >  SRR4302547.48030/1‑94 (MQ=60)
                      ATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGC                                                                      >  SRR4302547.4054335/1‑94 (MQ=60)
                       TAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCA                                                                     <  SRR4302547.130243/94‑1 (MQ=60)
                         ATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATC                                                                   >  SRR4302547.4813624/1‑94 (MQ=60)
                          TCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCC                                                                  <  SRR4302547.4216650/94‑1 (MQ=60)
                          TCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCC                                                                  <  SRR4302547.1199181/94‑1 (MQ=60)
                           CGCTGCGCTCTCGTGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCG                                                                 >  SRR4302547.6335909/1‑94 (MQ=60)
                              TGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTC                                                              <  SRR4302547.3115762/94‑1 (MQ=60)
                              TGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTC                                                              <  SRR4302547.2324709/94‑1 (MQ=60)
                               GCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCT                                                             >  SRR4302547.3036113/1‑94 (MQ=60)
                               GCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCT                                                             <  SRR4302547.4859181/94‑1 (MQ=60)
                                CGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTC                                                            <  SRR4302547.1467256/94‑1 (MQ=60)
                                 GCTGTCGCTCCATCAGACTGAATAATTCATTCAGTAGCGCGGTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCCGATCCGTTCTCC                                                           <  SRR4302547.2203051/94‑1 (MQ=60)
                                   TCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCAT                                                         >  SRR4302547.4709601/1‑94 (MQ=60)
                                    CTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATA                                                        >  SRR4302547.5051377/1‑94 (MQ=60)
                                    CTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATA                                                        <  SRR4302547.5103326/94‑1 (MQ=60)
                                    CTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATA                                                        >  SRR4302547.5999599/1‑94 (MQ=60)
                                     TCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAA                                                       <  SRR4302547.6121814/94‑1 (MQ=60)
                                       GCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATG                                                     <  SRR4302547.6662454/94‑1 (MQ=60)
                                        CGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGC                                                    <  SRR4302547.477470/94‑1 (MQ=60)
                                         GCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCG                                                   <  SRR4302547.300006/94‑1 (MQ=60)
                                         GCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCG                                                   <  SRR4302547.3223578/94‑1 (MQ=60)
                                          CCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGT                                                  >  SRR4302547.5136537/1‑94 (MQ=60)
                                              CAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAAC                                              >  SRR4302547.2053376/1‑94 (MQ=60)
                                              CAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAAC                                              >  SRR4302547.6404240/1‑94 (MQ=60)
                                               AGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCTATCATGAAGCGCAGTTTCTTCCGCATCCGTTCTCtatattgtgtggaca                                             >  SRR4302547.2555733/1‑79 (MQ=60)
                                               AGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACA                                             >  SRR4302547.2120596/1‑94 (MQ=60)
                                               AGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACA                                             <  SRR4302547.6416608/94‑1 (MQ=60)
                                                    GAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACC                                        <  SRR4302547.3456754/94‑1 (MQ=60)
                                                    GAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACC                                        >  SRR4302547.2208035/1‑94 (MQ=60)
                                                    GAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACC                                        <  SRR4302547.3235043/94‑1 (MQ=60)
                                                     AATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCT                                       >  SRR4302547.903362/1‑94 (MQ=60)
                                                     AATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCT                                       <  SRR4302547.3784643/94‑1 (MQ=60)
                                                       TAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGC                                     <  SRR4302547.5006612/94‑1 (MQ=60)
                                                        AATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCT                                    >  SRR4302547.593747/1‑94 (MQ=60)
                                                        AATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCT                                    <  SRR4302547.2486436/94‑1 (MQ=60)
                                                         ATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTG                                   <  SRR4302547.1704312/94‑1 (MQ=60)
                                                           TCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGAT                                 <  SRR4302547.503943/94‑1 (MQ=60)
                                                            CATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATA                                >  SRR4302547.2136666/1‑94 (MQ=60)
                                                            CATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATA                                <  SRR4302547.6195866/94‑1 (MQ=60)
                                                            CATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATA                                >  SRR4302547.3679389/1‑94 (MQ=60)
                                                             ATTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAG                               >  SRR4302547.256558/1‑94 (MQ=60)
                                                              TTCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGC                              <  SRR4302547.1221438/94‑1 (MQ=60)
                                                               TCAGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCT                             <  SRR4302547.6050530/94‑1 (MQ=60)
                                                                CAGTAGCGCTTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTG                            <  SRR4302547.2557101/94‑1 (MQ=60)
                                                                 AGTAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGC                           >  SRR4302547.5496730/1‑94 (MQ=60)
                                                                   TAGCGCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCC                         >  SRR4302547.4698836/1‑94 (MQ=60)
                                                                       GCGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGG                     >  SRR4302547.1421733/1‑94 (MQ=60)
                                                                        CGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGC                    >  SRR4302547.4135206/1‑94 (MQ=60)
                                                                        CGTTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGC                    >  SRR4302547.440631/1‑94 (MQ=60)
                                                                          TTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCT                  <  SRR4302547.5451041/94‑1 (MQ=60)
                                                                          TTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCT                  <  SRR4302547.723606/94‑1 (MQ=60)
                                                                          TTATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCT                  <  SRR4302547.760388/94‑1 (MQ=60)
                                                                           TATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTC                 <  SRR4302547.6662207/94‑1 (MQ=60)
                                                                            ATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCA                >  SRR4302547.4083444/1‑94 (MQ=60)
                                                                            ATCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCA                >  SRR4302547.5793654/1‑94 (MQ=60)
                                                                             TCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCAT               <  SRR4302547.5663013/94‑1 (MQ=60)
                                                                             TCCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCAT               >  SRR4302547.5966420/1‑94 (MQ=60)
                                                                              CCTCTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATT              >  SRR4302547.5910471/1‑94 (MQ=60)
                                                                                 CTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAG           >  SRR4302547.1548014/1‑94 (MQ=60)
                                                                                 CTTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAG           <  SRR4302547.1889263/94‑1 (MQ=60)
                                                                                  TTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGG          <  SRR4302547.6523272/94‑1 (MQ=60)
                                                                                  TTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGG          <  SRR4302547.1042148/94‑1 (MQ=60)
                                                                                  TTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGG          <  SRR4302547.5306621/94‑1 (MQ=60)
                                                                                  TTTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGG          <  SRR4302547.4533161/94‑1 (MQ=60)
                                                                                   TTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGG         <  SRR4302547.1850320/94‑1 (MQ=60)
                                                                                   TTTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGG         <  SRR4302547.453348/94‑1 (MQ=60)
                                                                                    TTTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGC        >  SRR4302547.3876362/1‑94 (MQ=60)
                                                                                     TTGCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCA       >  SRR4302547.3259084/1‑94 (MQ=60)
                                                                                       GCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATC     <  SRR4302547.2027520/94‑1 (MQ=60)
                                                                                       GCTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATC     <  SRR4302547.2415200/94‑1 (MQ=60)
                                                                                        CTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATCT    >  SRR4302547.163716/1‑94 (MQ=60)
                                                                                        CTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATCT    >  SRR4302547.3067421/1‑94 (MQ=60)
                                                                                        CTCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATCT    >  SRR4302547.2096600/1‑94 (MQ=60)
                                                                                         TCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATCTA   <  SRR4302547.3812442/94‑1 (MQ=60)
                                                                                         TCCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATCTA   >  SRR4302547.4705622/1‑94 (MQ=60)
                                                                                          CCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATCTAC  >  SRR4302547.2751398/1‑94 (MQ=60)
                                                                                          CCATCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGATGATAGCTGTCCAGGGCCTCATTCAGGGCATCTAC  >  SRR4302547.4312515/1‑94 (MQ=60)
                                                                                            |                                                                                           
TCAGCATGCGGAATGTGCGGGTATAATCGCTGCGCTCTCGCGCCATCAGACTGAATAATTCATTCAGTAGCGCGTTATCCTCTTTTTGCTCCGTCATGAAGCCCAGTTTCTGCCGCATCCGTTCTCCATAATGCGTCAACAAAACCTGCTGATAGCTGTCCAGGGCCTCATTCAGGGCATCTAC  >  NC_000913/1788167‑1788350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑