Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,830,970	T→C	R173R (CGT→CGC)	xthA →	exonuclease III

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,830,970	0	T	C	99.6%	847.6 / NA	236	R173R (CGT→CGC)	xthA	exonuclease III
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (115/120); total (116/120)
Fisher's exact test for biased strand distribution p-value = 4.92e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 243 total aligned reads displayed.

TAATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGTACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGAA  >  NC_000913/1830880‑1831059

tAATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCAc                                                                                         >  2:2432319/1‑93 (MQ=255)

tAATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCAc                                                                                         <  2:4129918/93‑1 (MQ=255)

tAATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCAc                                                                                         <  2:3215522/93‑1 (MQ=255)

tAATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCAc                                                                                         <  2:3594965/93‑1 (MQ=255)

 aaaccGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCAcc                                                                                        <  1:5272920/90‑1 (MQ=255)

  aTCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCg                                                                                       >  2:1959386/1‑93 (MQ=255)

    ccGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGt                                                                                     <  2:1178423/93‑1 (MQ=255)

    ccGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGt                                                                                     <  2:5555795/93‑1 (MQ=255)

    ccGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGt                                                                                     <  1:2234803/93‑1 (MQ=255)

      ggTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTaa                                                                                   >  2:781466/1‑93 (MQ=255)

       gTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTaaa                                                                                  >  1:1958500/1‑93 (MQ=255)

       gTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTaaa                                                                                  <  2:1789760/93‑1 (MQ=255)

       gTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTaaa                                                                                  <  2:6232799/93‑1 (MQ=255)

         aCTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATg                                                                                >  2:4561775/1‑93 (MQ=255)

            gATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGctc                                                                             <  1:2463876/93‑1 (MQ=255)

             aTTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGctct                                                                            >  2:3779833/1‑93 (MQ=255)

             aTTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGctct                                                                            >  1:5661746/1‑93 (MQ=255)

              ttATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCtt                                                                           <  1:1521196/93‑1 (MQ=255)

               tATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCttt                                                                          >  2:3834608/1‑93 (MQ=255)

                 tGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTcc                                                                        <  2:485605/93‑1 (MQ=255)

                 tGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTcc                                                                        <  2:1515130/93‑1 (MQ=255)

                 tGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTcc                                                                        <  1:674514/93‑1 (MQ=255)

                  gggCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCt                                                                       >  1:3516288/1‑93 (MQ=255)

                   ggCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTg                                                                      <  1:4178728/93‑1 (MQ=255)

                    gCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGc                                                                     <  1:376172/93‑1 (MQ=255)

                    gCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGc                                                                     >  1:3093079/1‑93 (MQ=255)

                        tatGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGa                                                                 <  2:2155353/93‑1 (MQ=255)

                         atGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGaa                                                                <  1:5545276/93‑1 (MQ=255)

                         atGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGaa                                                                <  2:6037348/93‑1 (MQ=255)

                          tGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAag                                                               >  1:1591517/1‑93 (MQ=255)

                          tGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAag                                                               >  1:2704709/1‑93 (MQ=255)

                           gAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAaga                                                              <  2:4226406/93‑1 (MQ=255)

                            aaTATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAagag                                                             <  2:3114704/93‑1 (MQ=255)

                            aaTATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAagag                                                             <  1:5326076/93‑1 (MQ=255)

                             atatCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAgc                                                            >  1:1775303/1‑93 (MQ=255)

                              tatCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAgcg                                                           >  1:117073/1‑93 (MQ=255)

                              tatCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAgcg                                                           >  1:4524624/1‑93 (MQ=255)

                              tatCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAgcg                                                           >  1:5843610/1‑93 (MQ=255)

                              tatCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAgcg                                                           <  1:6339909/93‑1 (MQ=255)

                              tatCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAgcg                                                           >  1:6246211/1‑93 (MQ=255)

                               atCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAgcgc                                                          <  1:4465563/93‑1 (MQ=255)

                               atCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAgcgc                                                          <  1:5780204/93‑1 (MQ=255)

                                tCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGcgcg                                                         <  1:4208063/93‑1 (MQ=255)

                                  aGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGaa                                                       <  1:4906448/93‑1 (MQ=255)

                                    cccTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAatg                                                     <  2:535333/93‑1 (MQ=255)

                                     ccTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAatgg                                                    >  2:6099787/1‑93 (MQ=255)

                                        tcAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGGGCGAatggatg                                                 <  1:2947584/92‑1 (MQ=255)

                                        aCAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAatggatg                                                 <  2:751131/93‑1 (MQ=255)

                                          aGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAAtggatgga                                               <  1:2665921/93‑1 (MQ=255)

                                           gATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGAc                                              >  1:2901425/1‑93 (MQ=255)

                                           gATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGAc                                              <  2:4995384/93‑1 (MQ=255)

                                            aTCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACa                                             <  1:4350707/93‑1 (MQ=255)

                                             tCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAg                                            <  1:1401873/93‑1 (MQ=255)

                                             tCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAg                                            >  1:3633735/1‑93 (MQ=255)

                                              cTGGATATCGGCATTGGCGAAGAAACCCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAgg                                           <  2:2923323/93‑1 (MQ=255)

                                               tGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGc                                          >  2:5166405/1‑93 (MQ=255)

                                               tGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGc                                          >  1:2793632/1‑93 (MQ=255)

                                               tGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGc                                          <  1:165840/93‑1 (MQ=255)

                                                ggATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCt                                         <  1:6130408/93‑1 (MQ=255)

                                                 gATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCtg                                        <  2:4438529/93‑1 (MQ=255)

                                                 gATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCtg                                        >  2:6597020/1‑93 (MQ=255)

                                                   tatCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCtgat                                      >  1:5133902/1‑93 (MQ=255)

                                                    atCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCtgatg                                     <  2:3856587/93‑1 (MQ=255)

                                                      tggCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAg                                   <  2:5252541/92‑1 (MQ=255)

                                                      cGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAg                                   >  1:1452018/1‑93 (MQ=255)

                                                       ggCATTGTCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTACCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGc                                  <  2:5868867/93‑1 (MQ=255)

                                                       ggCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGc                                  >  2:5603376/1‑93 (MQ=255)

                                                        gCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCt                                 <  2:2037046/93‑1 (MQ=255)

                                                        gCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCt                                 >  2:737144/1‑93 (MQ=255)

                                                         cATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTg                                >  1:96727/1‑93 (MQ=255)

                                                          aTTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTgg                               >  2:1831049/1‑93 (MQ=255)

                                                           ttGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTggg                              <  1:1902459/93‑1 (MQ=255)

                                                           ttGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTggg                              >  1:46142/1‑93 (MQ=255)

                                                            tGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTgggg                             <  1:2736223/93‑1 (MQ=255)

                                                              gCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGt                           <  2:2726744/93‑1 (MQ=255)

                                                                gaagaaAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTg                         >  1:1753854/1‑93 (MQ=255)

                                                                gaagaaAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTg                         <  1:1326209/93‑1 (MQ=255)

                                                                  agaaAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGt                       >  1:5792670/1‑93 (MQ=255)

                                                                   gaaAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTc                      <  2:3370689/93‑1 (MQ=255)

                                                                   gaaAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTc                      >  1:4886430/1‑93 (MQ=255)

                                                                   gaaAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTc                      >  2:6523964/1‑93 (MQ=255)

                                                                   gaaAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTc                      <  2:1912170/93‑1 (MQ=255)

                                                                   gaaAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTc                      <  2:2354960/93‑1 (MQ=255)

                                                                     aaaCCGTAAGCGCTGGCTGTGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGa                    >  1:6496116/1‑93 (MQ=255)

                                                                     aaaCCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGa                    >  2:2493378/1‑93 (MQ=255)

                                                                      aaCCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGAt                   <  2:1302483/93‑1 (MQ=255)

                                                                      aaCCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGAt                   >  1:4943951/1‑93 (MQ=255)

                                                                        ccGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATAc                 >  2:6441915/1‑93 (MQ=255)

                                                                        ccGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATAc                 >  2:5465983/1‑93 (MQ=255)

                                                                           tAATCGCTTGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCtt              <  1:1212218/93‑1 (MQ=255)

                                                                           tAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCtt              <  2:5704016/93‑1 (MQ=255)

                                                                            aaGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTc             >  2:4405458/1‑93 (MQ=255)

                                                                            aaGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGGCGATACCTTc             >  2:1116965/1‑93 (MQ=255)

                                                                                gctggctgCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGcc         >  1:5975725/1‑93 (MQ=255)

                                                                                gctggctgCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACACGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGcc         >  2:4447234/1‑93 (MQ=255)

                                                                                 ctggctgCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCa        >  1:4216135/1‑93 (MQ=255)

                                                                                  tggctgCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCAt       <  1:5071897/93‑1 (MQ=255)

                                                                                  tggctgCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGCACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCAt       <  1:4584761/93‑1 (MQ=255)

                                                                                      tgCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGa   >  1:718019/1‑93 (MQ=255)

                                                                                       gcgcACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGaa  <  1:2096732/93‑1 (MQ=255)

TAATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGTACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGAA  >  NC_000913/1830880‑1831059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGATAATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGTACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGAATCC  >  NC_000913/1830877‑1831062

TGATAATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGC                                                                                              >  SRR4302547.5449062/1‑94 (MQ=60)

TGATAATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGC                                                                                              <  SRR4302547.584927/94‑1 (MQ=60)

  ATAATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCAC                                                                                            <  SRR4302547.4868063/94‑1 (MQ=60)

   TAATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACC                                                                                           >  SRR4302547.5829256/1‑94 (MQ=60)

    AATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCG                                                                                          >  SRR4302547.4383908/1‑94 (MQ=60)

    AAACCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCG                                                                                          <  SRR4302547.5381580/94‑1 (MQ=60)

     ATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGG                                                                                         >  SRR4302547.428729/1‑94 (MQ=60)

     ATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGG                                                                                         >  SRR4302547.4269305/1‑94 (MQ=60)

       CCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTA                                                                                       <  SRR4302547.5905944/94‑1 (MQ=60)

       CCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTA                                                                                       <  SRR4302547.2279854/94‑1 (MQ=60)

        CGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAA                                                                                      >  SRR4302547.3634071/1‑94 (MQ=60)

         GGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAA                                                                                     <  SRR4302547.581314/94‑1 (MQ=60)

         GGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAA                                                                                     >  SRR4302547.1997379/1‑94 (MQ=60)

          GTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAAT                                                                                    <  SRR4302547.1412215/94‑1 (MQ=60)

          GTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAAT                                                                                    >  SRR4302547.1634337/1‑94 (MQ=60)

            ACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGC                                                                                  >  SRR4302547.4211804/1‑94 (MQ=60)

             CTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCT                                                                                 >  SRR4302547.5552112/1‑94 (MQ=60)

              TGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTC                                                                                >  SRR4302547.6695335/1‑94 (MQ=60)

              TGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTC                                                                                >  SRR4302547.6019518/1‑94 (MQ=60)

               GATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCT                                                                               <  SRR4302547.2513679/94‑1 (MQ=60)

               GATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCT                                                                               >  SRR4302547.5778619/1‑94 (MQ=60)

                 TTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTT                                                                             <  SRR4302547.1551488/94‑1 (MQ=60)

                 TTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTT                                                                             <  SRR4302547.1891056/94‑1 (MQ=60)

                  TATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTC                                                                            >  SRR4302547.2027659/1‑94 (MQ=60)

                    TGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCT                                                                          <  SRR4302547.686933/94‑1 (MQ=60)

                    TGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCT                                                                          >  SRR4302547.3588072/1‑94 (MQ=60)

                      GGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGC                                                                        <  SRR4302547.4263872/94‑1 (MQ=60)

                      GGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGC                                                                        >  SRR4302547.3154397/1‑94 (MQ=60)

                      GGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGC                                                                        <  SRR4302547.1345799/94‑1 (MQ=60)

                       GCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCC                                                                       <  SRR4302547.383144/94‑1 (MQ=60)

                       GCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCC                                                                       <  SRR4302547.1428914/94‑1 (MQ=60)

                        CGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCG                                                                      >  SRR4302547.4644351/1‑94 (MQ=60)

                        CGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTCCGCACCGGTAAATGCTCTTTCCTGCCG                                                                      >  SRR4302547.1427689/1‑94 (MQ=60)

                          ATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGA                                                                    <  SRR4302547.3730423/94‑1 (MQ=60)

                           TATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAA                                                                   >  SRR4302547.4634879/1‑94 (MQ=60)

                            ATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAG                                                                  <  SRR4302547.5659702/94‑1 (MQ=60)

                            ATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAG                                                                  >  SRR4302547.1623126/1‑94 (MQ=60)

                            ATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAG                                                                  >  SRR4302547.2759021/1‑94 (MQ=60)

                             TGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGA                                                                 <  SRR4302547.2946077/94‑1 (MQ=60)

                               AATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGTAGAGC                                                               >  SRR4302547.3114328/1‑94 (MQ=60)

                               AATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGC                                                               >  SRR4302547.1810511/1‑94 (MQ=60)

                               AATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGC                                                               <  SRR4302547.5435854/94‑1 (MQ=60)

                               AATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGC                                                               <  SRR4302547.5230710/94‑1 (MQ=60)

                                ATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCG                                                              >  SRR4302547.5964496/1‑94 (MQ=60)

                                ATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCG                                                              >  SRR4302547.119197/1‑94 (MQ=60)

                                ATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCG                                                              >  SRR4302547.565406/1‑94 (MQ=60)

                                ATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCG                                                              >  SRR4302547.6375959/1‑94 (MQ=60)

                                ATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCG                                                              >  SRR4302547.4618124/1‑94 (MQ=60)

                                 TATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGC                                                             <  SRR4302547.6471928/94‑1 (MQ=60)

                                  ATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCG                                                            <  SRR4302547.4557831/94‑1 (MQ=60)

                                  ATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCG                                                            <  SRR4302547.5899761/94‑1 (MQ=60)

                                   TCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGA                                                           >  SRR4302547.4835835/1‑94 (MQ=60)

                                   TCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGA                                                           <  SRR4302547.4293937/94‑1 (MQ=60)

                                     AGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAAT                                                         <  SRR4302547.532446/94‑1 (MQ=60)

                                     AGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAAT                                                         >  SRR4302547.4706461/1‑94 (MQ=60)

                                     AGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAAT                                                         <  SRR4302547.5008055/94‑1 (MQ=60)

                                     AGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAAT                                                         <  SRR4302547.1944720/94‑1 (MQ=60)

                                     AGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAAT                                                         >  SRR4302547.2759992/1‑94 (MQ=60)

                                      GCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATG                                                        <  SRR4302547.2985015/94‑1 (MQ=60)

                                       CCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGG                                                       >  SRR4302547.245952/1‑94 (MQ=60)

                                       CCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGG                                                       >  SRR4302547.4293113/1‑94 (MQ=60)

                                       CCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGCAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGG                                                       >  SRR4302547.2748794/1‑94 (MQ=60)

                                        CCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGA                                                      >  SRR4302547.1514053/1‑94 (MQ=60)

                                         CTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGAT                                                     <  SRR4302547.2650717/94‑1 (MQ=60)

                                         CTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGAT                                                     <  SRR4302547.4457544/94‑1 (MQ=60)

                                           TCAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGGGCGAATGGATGG                                                   <  SRR4302547.3006298/94‑1 (MQ=60)

                                           ACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGG                                                   <  SRR4302547.544367/94‑1 (MQ=60)

                                             AGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGAC                                                 >  SRR4302547.5383064/1‑94 (MQ=60)

                                             AGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGAC                                                 <  SRR4302547.2719484/94‑1 (MQ=60)

                                             AGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGAC                                                 >  SRR4302547.2959278/1‑94 (MQ=60)

                                               ATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAG                                               <  SRR4302547.6342979/94‑1 (MQ=60)

                                               ATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAG                                               <  SRR4302547.4440099/94‑1 (MQ=60)

                                               ATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAG                                               >  SRR4302547.4981401/1‑94 (MQ=60)

                                               ATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAG                                               <  SRR4302547.821980/94‑1 (MQ=60)

                                               ATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAG                                               >  SRR4302547.3707855/1‑94 (MQ=60)

                                                TCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGG                                              <  SRR4302547.1429919/94‑1 (MQ=60)

                                                 CTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGC                                             >  SRR4302547.2849569/1‑94 (MQ=60)

                                                  TGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCT                                            <  SRR4302547.1695479/94‑1 (MQ=60)

                                                  TGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCT                                            <  SRR4302547.168888/94‑1 (MQ=60)

                                                   GGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTG                                           <  SRR4302547.6257573/94‑1 (MQ=60)

                                                     ATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGAT                                         <  SRR4302547.502991/94‑1 (MQ=60)

                                                     ATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGAT                                         >  SRR4302547.5239680/1‑94 (MQ=60)

                                                      TATCGGCATGGGGAAAAAAACCCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATG                                        <  SRR4302547.6232696/94‑1 (MQ=60)

                                                        TCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAG                                      <  SRR4302547.2002664/94‑1 (MQ=60)

                                                        TCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAG                                      >  SRR4302547.1481055/1‑94 (MQ=60)

                                                         CGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGC                                     >  SRR4302547.2819372/1‑94 (MQ=60)

                                                         CGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGC                                     >  SRR4302547.6626793/1‑94 (MQ=60)

                                                          GGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCT                                    <  SRR4302547.1843501/94‑1 (MQ=60)

                                                          GGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCT                                    >  SRR4302547.2905954/1‑94 (MQ=60)

                                                          GGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCT                                    >  SRR4302547.3752876/1‑94 (MQ=60)

                                                           GCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTG                                   >  SRR4302547.98524/1‑94 (MQ=60)

                                                           GCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTG                                   <  SRR4302547.2203284/94‑1 (MQ=60)

                                                             ATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGG                                 >  SRR4302547.47000/1‑94 (MQ=60)

                                                              TTGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGG                                <  SRR4302547.1940090/94‑1 (MQ=60)

                                                               TGGCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGG                               <  SRR4302547.2791136/94‑1 (MQ=60)

                                                                 GCGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTT                             <  SRR4302547.902859/94‑1 (MQ=60)

                                                                  CGAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTG                            >  SRR4302547.1788536/1‑94 (MQ=60)

                                                                   GAAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGG                           <  SRR4302547.1352865/94‑1 (MQ=60)

                                                                    AAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGT                          <  SRR4302547.4586516/94‑1 (MQ=60)

                                                                    AAGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGT                          >  SRR4302547.5912492/1‑94 (MQ=60)

                                                                     AGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTC                         >  SRR4302547.1210703/1‑94 (MQ=60)

                                                                     AGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTC                         >  SRR4302547.4987653/1‑94 (MQ=60)

                                                                     AGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTC                         >  SRR4302547.5120142/1‑94 (MQ=60)

                                                                     AGAAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTC                         >  SRR4302547.500497/1‑94 (MQ=60)

                                                                       AAAACCGTAAGCGCTGGCTGTGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGA                       >  SRR4302547.6631337/1‑94 (MQ=60)

                                                                       AAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGA                       >  SRR4302547.7176/1‑94 (MQ=60)

                                                                       AAAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGA                       <  SRR4302547.275667/94‑1 (MQ=60)

                                                                        AAACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGAT                      >  SRR4302547.5046336/1‑94 (MQ=60)

                                                                         AACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATA                     <  SRR4302547.4992294/94‑1 (MQ=60)

                                                                          ACCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATAC                    >  SRR4302547.590582/1‑94 (MQ=60)

                                                                           CCGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACC                   <  SRR4302547.2440129/94‑1 (MQ=60)

                                                                            CGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCT                  <  SRR4302547.1523448/94‑1 (MQ=60)

                                                                            CGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCT                  <  SRR4302547.6412310/94‑1 (MQ=60)

                                                                            CGTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCT                  <  SRR4302547.1590264/94‑1 (MQ=60)

                                                                             GTAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTT                 <  SRR4302547.3007482/94‑1 (MQ=60)

                                                                              TAATCGCTTGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTC                <  SRR4302547.1236685/94‑1 (MQ=60)

                                                                              TAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTC                >  SRR4302547.4423519/1‑94 (MQ=60)

                                                                              TAAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGGTGGTCGATACCTTC                >  SRR4302547.1445703/1‑94 (MQ=60)

                                                                               AAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCC               <  SRR4302547.3157111/94‑1 (MQ=60)

                                                                               AAGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCC               >  SRR4302547.5987483/1‑94 (MQ=60)

                                                                                AGCGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCG              <  SRR4302547.1788956/94‑1 (MQ=60)

                                                                                  CGCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCC            >  SRR4302547.6099670/1‑94 (MQ=60)

                                                                                   GCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCA           >  SRR4302547.4302202/1‑94 (MQ=60)

                                                                                   GCTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCA           <  SRR4302547.6566487/94‑1 (MQ=60)

                                                                                    CTGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCAT          >  SRR4302547.1687386/1‑94 (MQ=60)

                                                                                     TGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATG         <  SRR4302547.5176537/94‑1 (MQ=60)

                                                                                     TGGCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGCACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATG         <  SRR4302547.4679642/94‑1 (MQ=60)

                                                                                       GCTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCG       <  SRR4302547.6280239/94‑1 (MQ=60)

                                                                                        GTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGA      <  SRR4302547.3448849/94‑1 (MQ=60)

                                                                                        CTGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGA      >  SRR4302547.731337/1‑94 (MQ=60)

                                                                                         TGCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGAA     <  SRR4302547.5256239/94‑1 (MQ=60)

                                                                                          GCGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGAAT    <  SRR4302547.2138533/94‑1 (MQ=60)

                                                                                           CGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGAATC   >  SRR4302547.2896446/1‑94 (MQ=60)

                                                                                           CGCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGAATC   >  SRR4302547.1251081/1‑94 (MQ=60)

                                                                                            GCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGAATCC  <  SRR4302547.1827350/94‑1 (MQ=60)

                                                                                            GCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGAATCC  <  SRR4302547.479870/94‑1 (MQ=60)

                                                                                            GCACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGAATCC  >  SRR4302547.4956401/1‑94 (MQ=60)

TGATAATCCGGTACTGATTATGGGCGATATGAATATCAGCCCTACAGATCTGGATATCGGCATTGGCGAAGAAAACCGTAAGCGCTGGCTGCGTACCGGTAAATGCTCTTTCCTGCCGGAAGAGCGCGAATGGATGGACAGGCTGATGAGCTGGGGGTTGGTCGATACCTTCCGCCATGCGAATCC  >  NC_000913/1830877‑1831062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`