Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,837,763	T→C	H91H (CAT→CAC)	b1757 →	putative thiosulfate sulfur transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,837,763	0	T	C	86.0%	608.5 / 84.3	229	H91H (CAT→CAC)	b1757	putative thiosulfate sulfur transferase
Reads supporting (aligned to +/- strand): ref base T (15/17); new base C (99/98); total (114/115)
Fisher's exact test for biased strand distribution p-value = 8.49e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.35e-01

Only 100 of 234 total aligned reads displayed.

CCTTCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAAC  >  NC_000913/1837671‑1837852

ccTTCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACAt                                                                                           >  2:3174084/1‑93 (MQ=255)

ccTTCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACAt                                                                                           >  2:387039/1‑93 (MQ=255)

 cTTCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATa                                                                                          >  1:4267860/1‑93 (MQ=255)

  ttCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACaa                                                                                         >  1:3777049/1‑93 (MQ=255)

  ttCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACaa                                                                                         <  1:3965463/93‑1 (MQ=255)

   tCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAAc                                                                                        >  2:2135451/1‑93 (MQ=255)

   tCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAAc                                                                                        <  2:616275/93‑1 (MQ=255)

     tGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCt                                                                                      >  2:17606/1‑93 (MQ=255)

     tGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCt                                                                                      >  1:3496456/1‑93 (MQ=255)

      ggTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTg                                                                                     >  2:1731999/1‑93 (MQ=255)

        tCATGAACTTGCCGCCTTAACCCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGaa                                                                                   <  1:2050921/93‑1 (MQ=255)

         cATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGaaa                                                                                  <  1:2399743/93‑1 (MQ=255)

           tGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAAc                                                                                <  2:5073816/93‑1 (MQ=255)

           tGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAAc                                                                                >  1:1897841/1‑93 (MQ=255)

           tGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAAc                                                                                >  2:6603848/1‑93 (MQ=255)

             aaCTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCg                                                                              >  2:1909636/1‑93 (MQ=255)

             aaCTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCg                                                                              >  2:2544097/1‑93 (MQ=255)

               cTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGAt                                                                            >  2:1227354/1‑93 (MQ=255)

                 tGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGc                                                                          >  1:3453937/1‑93 (MQ=255)

                 tGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGc                                                                          <  1:6503146/93‑1 (MQ=255)

                  gccgccTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCt                                                                         <  1:3113558/93‑1 (MQ=255)

                  gccgccTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCt                                                                         <  2:4307149/93‑1 (MQ=255)

                   ccgccTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTc                                                                        <  2:6241367/93‑1 (MQ=255)

                   ccgccTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTc                                                                        <  1:3039892/93‑1 (MQ=255)

                    cgccTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTcc                                                                       <  2:3945149/93‑1 (MQ=255)

                     gccTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCg                                                                      >  1:4799876/1‑93 (MQ=255)

                      ccTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCgg                                                                     <  1:211689/93‑1 (MQ=255)

                      ccTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCgg                                                                     >  2:203140/1‑93 (MQ=255)

                      ccTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCgg                                                                     <  1:4641517/93‑1 (MQ=255)

                       cTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGt                                                                    >  1:5092702/1‑93 (MQ=255)

                        ttAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTg                                                                   <  2:1046456/93‑1 (MQ=255)

                         tAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTgg                                                                  >  1:5829600/1‑93 (MQ=255)

                          aaaCCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGgc                                                                 >  1:1341448/1‑93 (MQ=255)

                           aaCCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGgcg                                                                >  1:4024885/1‑93 (MQ=255)

                             ccTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCt                                                              <  1:4601911/93‑1 (MQ=255)

                              ctctctGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTg                                                             >  2:2840708/1‑93 (MQ=255)

                                ctctGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTa                                                           >  1:1749558/1‑93 (MQ=255)

                                ctctGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTa                                                           >  1:1043315/1‑93 (MQ=255)

                                 tctGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTAc                                                          <  2:1841544/93‑1 (MQ=255)

                                 tctGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTAc                                                          <  2:1071520/93‑1 (MQ=255)

                                   tGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACgg                                                        <  2:1949110/93‑1 (MQ=255)

                                    gCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGt                                                       <  2:1445776/93‑1 (MQ=255)

                                    gCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACgga                                                       >  1:2265305/1‑92 (MQ=255)

                                    gCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGt                                                       <  1:1056797/93‑1 (MQ=255)

                                    gCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGt                                                       >  1:1626487/1‑93 (MQ=255)

                                      cAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTaa                                                     <  2:6045536/93‑1 (MQ=255)

                                      cAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTaa                                                     <  1:776061/93‑1 (MQ=255)

                                       aGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAAt                                                    <  1:2033943/93‑1 (MQ=255)

                                       aGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAAt                                                    >  2:1914821/1‑93 (MQ=255)

                                       aGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAAt                                                    >  2:3591290/1‑93 (MQ=255)

                                        gCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATg                                                   <  2:6313246/93‑1 (MQ=255)

                                         cTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGa                                                  <  1:4713145/93‑1 (MQ=255)

                                           ggCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACa                                                >  2:5196753/1‑93 (MQ=255)

                                           ggCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACa                                                <  2:3681729/93‑1 (MQ=255)

                                            gCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACaa                                               <  1:5595836/93‑1 (MQ=255)

                                            gCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACaa                                               <  1:4506324/93‑1 (MQ=255)

                                            gCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACaa                                               <  2:6121289/93‑1 (MQ=255)

                                             cTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACaaa                                              >  1:5016405/1‑93 (MQ=255)

                                             cTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACaaa                                              <  2:4733569/93‑1 (MQ=255)

                                              ttGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAg                                             <  1:423221/93‑1 (MQ=255)

                                               tGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGa                                            <  1:549810/93‑1 (MQ=255)

                                               tGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGa                                            <  2:5682640/93‑1 (MQ=255)

                                               tGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGa                                            <  1:1930674/93‑1 (MQ=255)

                                                gACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGAt                                           <  2:5728759/93‑1 (MQ=255)

                                                gACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGAt                                           >  2:1330025/1‑93 (MQ=255)

                                                  cAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGt                                         <  1:1113405/93‑1 (MQ=255)

                                                   aaaaTGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTc                                        <  1:6037729/93‑1 (MQ=255)

                                                    aaaTGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCg                                       >  1:5600260/1‑93 (MQ=255)

                                                    aaaTGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCg                                       <  2:6580848/93‑1 (MQ=255)

                                                     aaTGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGa                                      <  2:1174996/93‑1 (MQ=255)

                                                            aCCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTc                               >  1:92340/1‑93 (MQ=255)

                                                               gAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCaaa                            >  1:2768581/1‑93 (MQ=255)

                                                               gAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCaaa                            >  1:5204417/1‑93 (MQ=255)

                                                                aaCAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCaaaa                           >  1:444648/1‑93 (MQ=255)

                                                                aaCAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCaaaa                           >  2:6278657/1‑93 (MQ=255)

                                                                aaCAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCaaaa                           >  2:4509183/1‑93 (MQ=255)

                                                                  cAGCTCAACCCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAAcg                         >  1:5302358/1‑93 (MQ=255)

                                                                      tCAACGCTTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGAc                     <  1:2572587/93‑1 (MQ=255)

                                                                        aaCGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTg                   >  1:2502822/1‑93 (MQ=255)

                                                                        aaCGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTg                   >  2:590459/1‑93 (MQ=255)

                                                                         aCGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGc                  >  1:617459/1‑93 (MQ=255)

                                                                          cgcgTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCa                 >  1:1565560/1‑93 (MQ=255)

                                                                          cgcgTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCa                 >  2:968176/1‑93 (MQ=255)

                                                                          cgcgTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCa                 <  1:1888286/93‑1 (MQ=255)

                                                                             gTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCaaaa              >  1:4158948/1‑93 (MQ=255)

                                                                              tGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCaaaaa             >  2:5286731/1‑93 (MQ=255)

                                                                              tGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCaaaaa             <  2:3207482/93‑1 (MQ=255)

                                                                              tGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCaaaaa             <  2:6248115/93‑1 (MQ=255)

                                                                               ggATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAg            >  1:2301443/1‑93 (MQ=255)

                                                                               ggATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAg            <  1:5686335/93‑1 (MQ=255)

                                                                               ggATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAg            <  2:3292796/93‑1 (MQ=255)

                                                                               ggATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAg            <  1:6244765/93‑1 (MQ=255)

                                                                                 aTCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCa          >  2:715820/1‑93 (MQ=255)

                                                                                 aTCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCa          <  2:2497675/93‑1 (MQ=255)

                                                                                   cAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAgg        >  1:3210510/1‑93 (MQ=255)

                                                                                   cAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAgg        <  2:5265583/93‑1 (MQ=255)

                                                                                   cAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTAAAAACGCGACTGCAAAAAGCAgg        <  1:5350865/93‑1 (MQ=255)

                                                                                     aGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGtt      >  1:8018/1‑93 (MQ=255)

                                                                                      gCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGttt     <  1:5995315/93‑1 (MQ=255)

                                                                                         aCATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAAc  <  2:4203816/93‑1 (MQ=255)

CCTTCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAAC  >  NC_000913/1837671‑1837852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCCTTCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCAT  >  NC_000913/1837670‑1837856

CCCTTCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACAC                                                                                               >  SRR4302547.2037401/1‑94 (MQ=60)

CCCTTCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACAC                                                                                               >  SRR4302547.6326581/1‑94 (MQ=60)

CCCTTCTGGTCATGAACTTGCCGCATTAAACCTCTCTGCCAGCTGGCATGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACAC                                                                                               >  SRR4302547.5450716/1‑94 (MQ=60)

 CCTTCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATA                                                                                              >  SRR4302547.4355376/1‑94 (MQ=60)

 CCTTCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACA                                                                                              >  SRR4302547.5560063/1‑94 (MQ=60)

  CTTCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAA                                                                                             >  SRR4302547.3854075/1‑94 (MQ=60)

   TTCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAAC                                                                                            <  SRR4302547.4046113/94‑1 (MQ=60)

    TCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACC                                                                                           >  SRR4302547.2772579/1‑94 (MQ=60)

    TCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACC                                                                                           <  SRR4302547.1946628/94‑1 (MQ=60)

     CTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCT                                                                                          >  SRR4302547.1862440/1‑94 (MQ=60)

     CTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCT                                                                                          >  SRR4302547.3567805/1‑94 (MQ=60)

      TGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTG                                                                                         <  SRR4302547.6224254/94‑1 (MQ=60)

       GGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGA                                                                                        <  SRR4302547.2051110/94‑1 (MQ=60)

         TCATGAACTTGCCGCCTTAACCCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAA                                                                                      <  SRR4302547.2091826/94‑1 (MQ=60)

         TCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAA                                                                                      >  SRR4302547.2119099/1‑94 (MQ=60)

          CATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAA                                                                                     <  SRR4302547.2448348/94‑1 (MQ=60)

           ATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAAC                                                                                    >  SRR4302547.1935388/1‑94 (MQ=60)

           ATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAAC                                                                                    <  SRR4302547.513489/94‑1 (MQ=60)

               ACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGAT                                                                                >  SRR4302547.3203671/1‑94 (MQ=60)

               ACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGAT                                                                                <  SRR4302547.6124688/94‑1 (MQ=60)

                 TTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGC                                                                              >  SRR4302547.470457/1‑94 (MQ=60)

                 TTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGC                                                                              <  SRR4302547.4353078/94‑1 (MQ=60)

                 TTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGC                                                                              >  SRR4302547.3524347/1‑94 (MQ=60)

                  TGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCT                                                                             <  SRR4302547.6638511/94‑1 (MQ=60)

                  TGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCT                                                                             <  SRR4302547.4722859/94‑1 (MQ=60)

                   GCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTC                                                                            <  SRR4302547.3175268/94‑1 (MQ=60)

                    CCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCC                                                                           >  SRR4302547.6286432/1‑94 (MQ=60)

                    CCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCC                                                                           <  SRR4302547.3100395/94‑1 (MQ=60)

                     CGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCG                                                                          >  SRR4302547.4899335/1‑94 (MQ=60)

                     CGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCG                                                                          <  SRR4302547.1068079/94‑1 (MQ=60)

                      CCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATAAAGCAACACAACCTGAAAACCGATGCTCCGG                                                                         <  SRR4302547.3703955/94‑1 (MQ=60)

                       CCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGT                                                                        >  SRR4302547.5197734/1‑94 (MQ=60)

                       CCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGT                                                                        <  SRR4302547.3543434/94‑1 (MQ=60)

                       CCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGT                                                                        <  SRR4302547.215680/94‑1 (MQ=60)

                       CCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGT                                                                        <  SRR4302547.4737647/94‑1 (MQ=60)

                       CCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGT                                                                        >  SRR4302547.4455863/1‑94 (MQ=60)

                        CTTAAACCTCTCTGCCAGCTGGCTTGACACAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTG                                                                       >  SRR4302547.6306388/1‑94 (MQ=60)

                        CTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTG                                                                       >  SRR4302547.2410965/1‑94 (MQ=60)

                        CTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTG                                                                       <  SRR4302547.5731270/94‑1 (MQ=60)

                         TTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGCAAACCGATGCTCCGGTGG                                                                      >  SRR4302547.52541/1‑94 (MQ=60)

                         TTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGG                                                                      >  SRR4302547.5950230/1‑94 (MQ=60)

                          TAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGC                                                                     >  SRR4302547.3234002/1‑94 (MQ=60)

                          TAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGC                                                                     >  SRR4302547.1368395/1‑94 (MQ=60)

                           AAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCG                                                                    >  SRR4302547.4106661/1‑94 (MQ=60)

                           AAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCG                                                                    >  SRR4302547.4106299/1‑94 (MQ=60)

                            AACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGC                                                                   >  SRR4302547.3153882/1‑94 (MQ=60)

                              CCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTG                                                                 <  SRR4302547.4697145/94‑1 (MQ=60)

                              CCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTG                                                                 >  SRR4302547.2276142/1‑94 (MQ=60)

                               CTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGT                                                                <  SRR4302547.4544854/94‑1 (MQ=60)

                               CTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGT                                                                >  SRR4302547.5458937/1‑94 (MQ=60)

                                TCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTA                                                               >  SRR4302547.1063908/1‑94 (MQ=60)

                                TCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTA                                                               >  SRR4302547.1784091/1‑94 (MQ=60)

                                    TGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGT                                                           >  SRR4302547.1658666/1‑94 (MQ=60)

                                    TGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGA                                                           >  SRR4302547.2311093/1‑94 (MQ=60)

                                     GCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTA                                                          <  SRR4302547.1077817/94‑1 (MQ=60)

                                      CCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAA                                                         >  SRR4302547.1711848/1‑94 (MQ=60)

                                       CAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTTTACGGTAAT                                                        <  SRR4302547.6606223/94‑1 (MQ=60)

                                       CAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAAT                                                        <  SRR4302547.790737/94‑1 (MQ=60)

                                       CAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAAT                                                        >  SRR4302547.823421/1‑94 (MQ=60)

                                        AGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATG                                                       <  SRR4302547.2074467/94‑1 (MQ=60)

                                          CTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGAC                                                     >  SRR4302547.2325303/1‑94 (MQ=60)

                                          CTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGAC                                                     <  SRR4302547.4810725/94‑1 (MQ=60)

                                           TGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACA                                                    >  SRR4302547.4180407/1‑94 (MQ=60)

                                             GCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAA                                                  <  SRR4302547.5711275/94‑1 (MQ=60)

                                             GCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAA                                                  <  SRR4302547.2482654/94‑1 (MQ=60)

                                             GCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAA                                                  >  SRR4302547.5120092/1‑94 (MQ=60)

                                             GCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAA                                                  <  SRR4302547.4599380/94‑1 (MQ=60)

                                              CTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAG                                                 >  SRR4302547.1546186/1‑94 (MQ=60)

                                               TTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGA                                                >  SRR4302547.814348/1‑94 (MQ=60)

                                               TTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGA                                                <  SRR4302547.431067/94‑1 (MQ=60)

                                                TGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGAT                                               >  SRR4302547.5653924/1‑94 (MQ=60)

                                                TGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGAT                                               <  SRR4302547.1968948/94‑1 (MQ=60)

                                                TGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGAT                                               <  SRR4302547.5869486/94‑1 (MQ=60)

                                                TGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGAT                                               <  SRR4302547.559734/94‑1 (MQ=60)

                                                TGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGAT                                               <  SRR4302547.2873035/94‑1 (MQ=60)

                                                   CAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTC                                            <  SRR4302547.1135831/94‑1 (MQ=60)

                                                   CAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTC                                            <  SRR4302547.172736/94‑1 (MQ=60)

                                                    AAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCG                                           <  SRR4302547.6163017/94‑1 (MQ=60)

                                                    AAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCG                                           >  SRR4302547.5715781/1‑94 (MQ=60)

                                                      AATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGAC                                         <  SRR4302547.1619522/94‑1 (MQ=60)

                                                       ATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACG                                        >  SRR4302547.5119753/1‑94 (MQ=60)

                                                            CACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTC                                   >  SRR4302547.4490375/1‑94 (MQ=60)

                                                            CACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTC                                   >  SRR4302547.94060/1‑94 (MQ=60)

                                                             CCCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCA                                  <  SRR4302547.4158112/94‑1 (MQ=60)

                                                             ACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCA                                  >  SRR4302547.5909939/1‑94 (MQ=60)

                                                             ACCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCA                                  >  SRR4302547.20969/1‑94 (MQ=60)

                                                              CCGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAA                                 <  SRR4302547.5383541/94‑1 (MQ=60)

                                                               CGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAA                                >  SRR4302547.2824053/1‑94 (MQ=60)

                                                               CGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAA                                >  SRR4302547.89576/1‑94 (MQ=60)

                                                               CGAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAA                                >  SRR4302547.5311514/1‑94 (MQ=60)

                                                                GAACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAA                               >  SRR4302547.452932/1‑94 (MQ=60)

                                                                  ACAGCTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACG                             >  SRR4302547.3841814/1‑94 (MQ=60)

                                                                  ACAGCTCAACCCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACG                             >  SRR4302547.5411735/1‑94 (MQ=60)

                                                                   CAGCTCANCGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTANTGNCNNAGATGTCGACGCNGNCAAAACGC                            >  SRR4302547.3053077/1‑94 (MQ=60)

                                                                      CTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGAC                         >  SRR4302547.600018/1‑94 (MQ=60)

                                                                      CTCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGAC                         >  SRR4302547.5714932/1‑94 (MQ=60)

                                                                       TCAACGCTTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACT                        <  SRR4302547.2624527/94‑1 (MQ=60)

                                                                       TCAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACT                        >  SRR4302547.1355218/1‑94 (MQ=60)

                                                                        CAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTG                       >  SRR4302547.2553397/1‑94 (MQ=60)

                                                                        CAACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTG                       <  SRR4302547.6441443/94‑1 (MQ=60)

                                                                         AACGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGC                      >  SRR4302547.628889/1‑94 (MQ=60)

                                                                          ACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCA                     >  SRR4302547.1596741/1‑94 (MQ=60)

                                                                           CGCGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAA                    <  SRR4302547.1925600/94‑1 (MQ=60)

                                                                             CGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAA                  >  SRR4302547.4243683/1‑94 (MQ=60)

                                                                             CGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAA                  >  SRR4302547.2085116/1‑94 (MQ=60)

                                                                             CGTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAA                  <  SRR4302547.5334986/94‑1 (MQ=60)

                                                                              GTGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAA                 >  SRR4302547.4687555/1‑94 (MQ=60)

                                                                               TGGATCAAGCAACATAACCTGAAACCCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAG                <  SRR4302547.3517266/94‑1 (MQ=60)

                                                                               TGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAG                >  SRR4302547.2348080/1‑94 (MQ=60)

                                                                               TGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAG                <  SRR4302547.499478/94‑1 (MQ=60)

                                                                               TGGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGAGACTGCAAAAAC                >  SRR4302547.4290793/1‑94 (MQ=60)

                                                                                GGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGC               >  SRR4302547.5611916/1‑94 (MQ=60)

                                                                                GGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGC               >  SRR4302547.1276764/1‑94 (MQ=60)

                                                                                GGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGC               <  SRR4302547.6374486/94‑1 (MQ=60)

                                                                                GGATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGC               <  SRR4302547.5803748/94‑1 (MQ=60)

                                                                                 GATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCA              <  SRR4302547.486625/94‑1 (MQ=60)

                                                                                 GATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCA              <  SRR4302547.4790385/94‑1 (MQ=60)

                                                                                 GATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCA              >  SRR4302547.3979578/1‑94 (MQ=60)

                                                                                  ATCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAG             <  SRR4302547.2595477/94‑1 (MQ=60)

                                                                                   TCAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGG            >  SRR4302547.3274567/1‑94 (MQ=60)

                                                                                    CAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGT           <  SRR4302547.1937122/94‑1 (MQ=60)

                                                                                    CAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGT           >  SRR4302547.2714208/1‑94 (MQ=60)

                                                                                    CAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGT           >  SRR4302547.111316/1‑94 (MQ=60)

                                                                                    CAAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTAAAAACGCGACTGCAAAAAGCAGGT           <  SRR4302547.5461205/94‑1 (MQ=60)

                                                                                     AAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTT          >  SRR4302547.6774208/1‑94 (MQ=60)

                                                                                     AAGCAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTT          >  SRR4302547.8169/1‑94 (MQ=60)

                                                                                       GCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTA        <  SRR4302547.6119727/94‑1 (MQ=60)

                                                                                        CAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAA       >  SRR4302547.1925873/1‑94 (MQ=60)

                                                                                        CAACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAA       <  SRR4302547.5548358/94‑1 (MQ=60)

                                                                                          ACACACCCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACG     <  SRR4302547.763555/94‑1 (MQ=60)

                                                                                          ACACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACG     <  SRR4302547.2405302/94‑1 (MQ=60)

                                                                                            ACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCA   >  SRR4302547.4310321/1‑94 (MQ=60)

                                                                                            ACAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCA   >  SRR4302547.1194432/1‑94 (MQ=60)

                                                                                             CAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCAT  >  SRR4302547.961195/1‑94 (MQ=60)

CCCTTCTGGTCATGAACTTGCCGCCTTAAACCTCTCTGCCAGCTGGCTTGACAAAATGAGCACCGAACAGCTCAACGCGTGGATCAAGCAACATAACCTGAAAACCGATGCTCCGGTGGCGCTGTACGGTAATGACAAAGATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCAT  >  NC_000913/1837670‑1837856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`