Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,920,591 |
T→C |
T135A (ACC→GCC) |
b1838 ← |
protein phosphatase 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,920,591 | 0 | T | C | 80.9%
| 440.3
/ 103.0
| 199 | T135A (ACC→GCC) | b1838 | protein phosphatase 1 |
| Reads supporting (aligned to +/- strand): ref base T (23/15); new base C (85/76); total (108/91) |
| Fisher's exact test for biased strand distribution p-value = 4.70e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.30e-01 |
Only 100 of 206 total aligned reads displayed.
GGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAGCGCAAT > NC_000913/1920501‑1920681
|
ggCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGgcgc > 2:5116867/1‑93 (MQ=255)
ggCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGc < 1:2466958/93‑1 (MQ=255)
gCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGcgcg > 2:3458957/1‑93 (MQ=255)
gCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGcgcg > 2:3090030/1‑93 (MQ=255)
gCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCg < 1:5037287/93‑1 (MQ=255)
cTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGa > 2:3055119/1‑93 (MQ=255)
ccACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACt > 2:2575736/1‑93 (MQ=255)
cacaAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACtg < 1:3836687/93‑1 (MQ=255)
cacaAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACtg < 1:2314622/93‑1 (MQ=255)
cacaAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACtg < 1:1806991/93‑1 (MQ=255)
acaAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCTGCGCGACtgt < 1:5821349/93‑1 (MQ=255)
caAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACtgtg > 1:4175942/1‑93 (MQ=255)
aaGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTgggt > 2:6645456/1‑93 (MQ=255)
aaGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTgtgt < 2:4753183/93‑1 (MQ=255)
aaGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTgtgt < 2:4026333/93‑1 (MQ=255)
aGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTa > 1:6587272/1‑93 (MQ=255)
aGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTa < 1:787336/93‑1 (MQ=255)
aCCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACt > 1:6320289/1‑93 (MQ=255)
cTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTc > 1:4231462/1‑93 (MQ=255)
cTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTc > 2:198456/1‑93 (MQ=255)
cTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTc > 1:1509428/1‑93 (MQ=255)
tGATGCAAATCAACGTCCTTTTGCCATGCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCa < 2:791866/93‑1 (MQ=255)
gATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCaa > 1:3859980/1‑93 (MQ=255)
gATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCaa > 1:4305617/1‑93 (MQ=255)
gATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCaa > 1:5075503/1‑93 (MQ=255)
aTGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAg > 2:1577812/1‑93 (MQ=255)
cAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAAt > 2:4063589/1‑93 (MQ=255)
cAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAAt < 1:4533028/93‑1 (MQ=255)
aaaTCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATa < 1:620425/93‑1 (MQ=255)
aaTCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATaa > 1:3954963/1‑93 (MQ=255)
aaTCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATaa > 2:4471879/1‑93 (MQ=255)
aaTCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATaa < 2:5602507/93‑1 (MQ=255)
tCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAg > 1:3208400/1‑93 (MQ=255)
aaCGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAggg > 1:3180258/1‑93 (MQ=255)
aaCGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAggg > 2:589509/1‑93 (MQ=255)
aCGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGc < 1:3782090/93‑1 (MQ=255)
tCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCaaa < 1:5591152/93‑1 (MQ=255)
ccTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAAt > 1:5392335/1‑93 (MQ=255)
ccTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAAt > 1:1448392/1‑93 (MQ=255)
ccTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAAt < 1:1384431/93‑1 (MQ=255)
cTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATg < 2:1279472/93‑1 (MQ=255)
ttttGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGCGCAAATGc > 2:1360907/1‑93 (MQ=255)
tttGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCt > 2:1863375/1‑93 (MQ=255)
tttGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCt < 2:3315451/93‑1 (MQ=255)
tttGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCt < 1:3259581/93‑1 (MQ=255)
ttGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTg > 1:1335548/1‑93 (MQ=255)
gCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGAc > 1:4061618/1‑93 (MQ=255)
cATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACAt > 1:175994/1‑93 (MQ=255)
cATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACAt < 2:6438487/93‑1 (MQ=255)
cATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCCGACAt > 2:3700463/1‑93 (MQ=255)
ttCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACAttt < 1:5913480/93‑1 (MQ=255)
ttCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACAttt > 2:1049542/1‑93 (MQ=255)
cATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACAttttt > 1:2375945/1‑93 (MQ=255)
aaaCATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCa < 2:2835333/93‑1 (MQ=255)
aaaCATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCa < 1:3117676/93‑1 (MQ=255)
aaCATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAg > 2:3536169/1‑93 (MQ=255)
aaCATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAg < 1:956811/93‑1 (MQ=255)
aCATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAgc < 1:1943453/93‑1 (MQ=255)
aCATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAgc < 2:4542879/93‑1 (MQ=255)
catcatCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAgcg < 2:2345448/93‑1 (MQ=255)
catcatCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAgcg < 1:1286312/93‑1 (MQ=255)
catcatCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAgcg > 1:5460376/1‑93 (MQ=255)
atcatcTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAgcgc > 2:210255/1‑93 (MQ=255)
atcatcTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAgcgc > 1:4680228/1‑93 (MQ=255)
atcatcTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAgcgc < 1:572140/93‑1 (MQ=255)
atcTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGt > 2:110896/1‑93 (MQ=255)
atcTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGt > 2:6535600/1‑93 (MQ=255)
atcTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGt > 1:6063737/1‑93 (MQ=255)
tcTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGtt > 2:4984967/1‑93 (MQ=255)
tGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGtttt > 2:5742841/1‑93 (MQ=255)
tGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGtttt > 1:6236234/1‑93 (MQ=255)
ggATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTc < 2:265620/93‑1 (MQ=255)
ggATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTc < 1:1120963/93‑1 (MQ=255)
aTAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGc > 1:2022746/1‑93 (MQ=255)
aTCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTg > 1:1650084/1‑93 (MQ=255)
ggCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGttt < 1:3424016/93‑1 (MQ=255)
ggCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGttt < 1:4330299/93‑1 (MQ=255)
cATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCt < 2:3416884/93‑1 (MQ=255)
tGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGt > 2:3600777/1‑93 (MQ=255)
tGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGt > 1:5024045/1‑93 (MQ=255)
tGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGt < 2:4386419/93‑1 (MQ=255)
gAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGtt > 2:5202687/1‑93 (MQ=255)
gAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGtt < 2:4212759/93‑1 (MQ=255)
cAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGAt > 2:6603172/1‑93 (MQ=255)
aTAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTa < 2:4178645/93‑1 (MQ=255)
aTAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTa < 1:136722/93‑1 (MQ=255)
aaCATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATc > 2:6000173/1‑93 (MQ=255)
aaCATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATc > 1:2989013/1‑93 (MQ=255)
aaCATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATc < 2:2273858/93‑1 (MQ=255)
aaCATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATc < 1:656641/93‑1 (MQ=255)
aaCATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATc < 1:5198994/93‑1 (MQ=255)
aCATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCt > 1:157425/1‑93 (MQ=255)
aTGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGc > 2:3856720/1‑93 (MQ=255)
gCTTGCCGGCGCGACTGTGTGCTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTGTGTTGATTATCTGccc > 2:6287712/1‑92 (MQ=255)
gCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCa < 1:6148843/93‑1 (MQ=255)
gCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCa > 2:5775359/1‑93 (MQ=255)
cTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAg < 1:4831200/93‑1 (MQ=255)
ttGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAgc < 1:2625315/93‑1 (MQ=255)
ttGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAgc > 2:2720529/1‑93 (MQ=255)
tGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAgcg > 2:5679299/1‑93 (MQ=255)
|
GGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAGCGCAAT > NC_000913/1920501‑1920681
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAGCGCAATAAA > NC_000913/1920498‑1920684
|
AGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGT < SRR4302547.5468176/94‑1 (MQ=60)
CGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGC < SRR4302547.4546201/94‑1 (MQ=60)
GGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCG < SRR4302547.2516825/94‑1 (MQ=60)
GGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCG > SRR4302547.2019871/1‑94 (MQ=60)
GCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGA < SRR4302547.5141327/94‑1 (MQ=60)
TCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACT < SRR4302547.4663076/94‑1 (MQ=60)
TCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACT < SRR4302547.87415/94‑1 (MQ=60)
CCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTG > SRR4302547.1533934/1‑94 (MQ=60)
CCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTG < SRR4302547.3173701/94‑1 (MQ=60)
CCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTG > SRR4302547.2306701/1‑94 (MQ=60)
CACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGT < SRR4302547.3914833/94‑1 (MQ=60)
CACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGT < SRR4302547.1842704/94‑1 (MQ=60)
CACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGT < SRR4302547.2416759/94‑1 (MQ=60)
CACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGT < SRR4302547.2361544/94‑1 (MQ=60)
ACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCTGCGCGACTGTG < SRR4302547.5941780/94‑1 (MQ=60)
ACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTG > SRR4302547.4257075/1‑94 (MQ=60)
ACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTG > SRR4302547.4261018/1‑94 (MQ=60)
ACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTG < SRR4302547.4350865/94‑1 (MQ=60)
CAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGT > SRR4302547.1390690/1‑94 (MQ=60)
AAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTA > SRR4302547.6724411/1‑94 (MQ=60)
AGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTAC < SRR4302547.802243/94‑1 (MQ=60)
AGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTAC < SRR4302547.2774377/94‑1 (MQ=60)
GACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACT < SRR4302547.1566885/94‑1 (MQ=60)
GACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACT > SRR4302547.6451706/1‑94 (MQ=60)
CCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTC > SRR4302547.4317972/1‑94 (MQ=60)
CCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTC > SRR4302547.1539508/1‑94 (MQ=60)
CTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCCGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCA > SRR4302547.141986/1‑94 (MQ=60)
TGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAA < SRR4302547.4414626/94‑1 (MQ=60)
TGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAA < SRR4302547.3361250/94‑1 (MQ=60)
TGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAA > SRR4302547.3938532/1‑94 (MQ=60)
TGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAA > SRR4302547.5540325/1‑94 (MQ=60)
TGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAA > SRR4302547.4394185/1‑94 (MQ=60)
TGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAA > SRR4302547.5180208/1‑94 (MQ=60)
TGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAA > SRR4302547.6715164/1‑94 (MQ=60)
GCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAAT < SRR4302547.6128344/94‑1 (MQ=60)
GCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAACAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAAT < SRR4302547.6018535/94‑1 (MQ=60)
CAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATA < SRR4302547.4626711/94‑1 (MQ=60)
AAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAA < SRR4302547.631901/94‑1 (MQ=60)
AAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAA > SRR4302547.4035409/1‑94 (MQ=60)
ATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAG < SRR4302547.6194948/94‑1 (MQ=60)
ATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAG > SRR4302547.3272406/1‑94 (MQ=60)
ATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCCGTGCGACTGTGTACTTCAAGAATAAAG > SRR4302547.2524313/1‑94 (MQ=60)
TCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGG > SRR4302547.121869/1‑94 (MQ=60)
TCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGG < SRR4302547.6506556/94‑1 (MQ=60)
CAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGG > SRR4302547.3243641/1‑94 (MQ=60)
CAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGG < SRR4302547.3290591/94‑1 (MQ=60)
CAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGG < SRR4302547.1407282/94‑1 (MQ=60)
ACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCA < SRR4302547.3859205/94‑1 (MQ=60)
ACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCA < SRR4302547.3910564/94‑1 (MQ=60)
CGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAA > SRR4302547.4472702/1‑94 (MQ=60)
GTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAA < SRR4302547.5133558/94‑1 (MQ=60)
TCCTTTTGCCATTCATAAACCTCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAAT > SRR4302547.6623081/1‑94 (MQ=60)
TCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAAT > SRR4302547.5503717/1‑94 (MQ=60)
TCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAAT < SRR4302547.5706491/94‑1 (MQ=60)
TCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAAT > SRR4302547.1477355/1‑94 (MQ=60)
CCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATG > SRR4302547.5029152/1‑94 (MQ=60)
CCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATG > SRR4302547.1796994/1‑94 (MQ=60)
CCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATG < SRR4302547.1412152/94‑1 (MQ=60)
TTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTG < SRR4302547.3324743/94‑1 (MQ=60)
TTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTG > SRR4302547.1362401/1‑94 (MQ=60)
TGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGAC > SRR4302547.4144101/1‑94 (MQ=60)
GCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACA > SRR4302547.4819199/1‑94 (MQ=60)
CCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACAT > SRR4302547.1634679/1‑94 (MQ=60)
CCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACAT > SRR4302547.3935521/1‑94 (MQ=60)
CCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACAT > SRR4302547.5314377/1‑94 (MQ=60)
CCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACAT > SRR4302547.179241/1‑94 (MQ=60)
CATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATT < SRR4302547.4088970/94‑1 (MQ=60)
CATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATT > SRR4302547.3264893/1‑94 (MQ=60)
ATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTT > SRR4302547.6342963/1‑94 (MQ=60)
ATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGATGACATTT > SRR4302547.322759/1‑94 (MQ=60)
TTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTT < SRR4302547.6035990/94‑1 (MQ=60)
TCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTT > SRR4302547.2424084/1‑94 (MQ=60)
ATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCC < SRR4302547.1353348/94‑1 (MQ=60)
AAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAG < SRR4302547.3179474/94‑1 (MQ=60)
AACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGC < SRR4302547.975394/94‑1 (MQ=60)
ACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCG > SRR4302547.3588320/1‑94 (MQ=60)
ACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCG < SRR4302547.1981988/94‑1 (MQ=60)
ACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCG > SRR4302547.5573185/1‑94 (MQ=60)
CATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGC < SRR4302547.1312215/94‑1 (MQ=60)
CATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGC > SRR4302547.4777179/1‑94 (MQ=60)
ATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCC < SRR4302547.582426/94‑1 (MQ=60)
CATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGT > SRR4302547.5941605/1‑94 (MQ=60)
CATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGT > SRR4302547.6189508/1‑94 (MQ=60)
CTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTT > SRR4302547.6365795/1‑94 (MQ=60)
CTGGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTT < SRR4302547.1937995/94‑1 (MQ=60)
GGATAATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCG < SRR4302547.1143569/94‑1 (MQ=60)
GATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGC > SRR4302547.2063019/1‑94 (MQ=60)
AATCGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTG > SRR4302547.1682653/1‑94 (MQ=60)
TCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTT < SRR4302547.2700723/94‑1 (MQ=60)
CGGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTT > SRR4302547.6430423/1‑94 (MQ=60)
GGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTC < SRR4302547.3493734/94‑1 (MQ=60)
GGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTC < SRR4302547.4419401/94‑1 (MQ=60)
GGCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTC > SRR4302547.2498869/1‑94 (MQ=60)
GCATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCT > SRR4302547.4032188/1‑94 (MQ=60)
ATGAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGT > SRR4302547.5127852/1‑94 (MQ=60)
GAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTG > SRR4302547.5200463/1‑94 (MQ=60)
GAGCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTG < SRR4302547.42855/94‑1 (MQ=60)
GCAATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGAT < SRR4302547.737654/94‑1 (MQ=60)
ATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTAT < SRR4302547.174095/94‑1 (MQ=60)
ATAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTAT < SRR4302547.139190/94‑1 (MQ=60)
TAACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATC > SRR4302547.3048481/1‑94 (MQ=60)
AACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCT > SRR4302547.160311/1‑94 (MQ=60)
AACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCT < SRR4302547.668734/94‑1 (MQ=60)
AACATGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCT < SRR4302547.5305984/94‑1 (MQ=60)
TGCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCA > SRR4302547.6299793/1‑94 (MQ=60)
TCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAG < SRR4302547.569343/94‑1 (MQ=60)
GCTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAG < SRR4302547.6276412/94‑1 (MQ=60)
CTTGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAGC < SRR4302547.4931351/94‑1 (MQ=60)
TTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAGCG < SRR4302547.2678199/94‑1 (MQ=60)
TGCCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAGCGC > SRR4302547.5616344/1‑94 (MQ=60)
CCGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAGCGCAA < SRR4302547.5156672/94‑1 (MQ=60)
CGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAGCGCAAT > SRR4302547.4872060/1‑94 (MQ=60)
CGGCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAGCGCAAT > SRR4302547.1473387/1‑94 (MQ=60)
GCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAGCGCAATAA < SRR4302547.4947195/94‑1 (MQ=60)
GCGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAGCGCAATAA > SRR4302547.53993/1‑94 (MQ=60)
CGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAGCGCAATAAA > SRR4302547.601805/1‑94 (MQ=60)
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AGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAACATGCTTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTTGTTTCTGTTGATTATCTGCCAGCGCAATAAA > NC_000913/1920498‑1920684
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
