Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,982,323 |
C→T |
G257D (GGC→GAC) |
araG ← |
ATP‑binding component of high‑affinity L‑arabinose transport system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,982,323 | 0 | C | T | 87.2%
| 654.5
/ 65.2
| 226 | G257D (GGC→GAC) | araG | ATP‑binding component of high‑affinity L‑arabinose transport system |
| Reads supporting (aligned to +/- strand): ref base C (17/12); new base T (108/89); total (125/101) |
| Fisher's exact test for biased strand distribution p-value = 8.42e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-02 |
Only 100 of 231 total aligned reads displayed.
AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATA > NC_000913/1982233‑1982412
|
gCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCAt > 1:2482949/1‑93 (MQ=255)
cccAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATa > 2:5017333/1‑93 (MQ=255)
cccAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATa > 1:3439196/1‑93 (MQ=255)
ccAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATaa < 2:5993884/93‑1 (MQ=255)
ccAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATaa < 2:2116963/93‑1 (MQ=255)
aacaaTTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACt > 1:4889746/1‑93 (MQ=255)
aacaaTTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACt < 1:297058/93‑1 (MQ=255)
aaTTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTAcg < 1:679056/93‑1 (MQ=255)
aTTTCACCCCTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTAcgc < 1:5757335/93‑1 (MQ=255)
aTTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTAcgc > 2:5492284/1‑93 (MQ=255)
tCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGt < 2:4870185/93‑1 (MQ=255)
tCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGt < 2:3211941/93‑1 (MQ=255)
tCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGt > 2:628495/1‑93 (MQ=255)
tCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGt < 1:3810298/93‑1 (MQ=255)
caccccTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGtt < 1:1511377/93‑1 (MQ=255)
caccacTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGtt > 1:2760936/1‑93 (MQ=255)
caccacTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGtt < 1:4154752/93‑1 (MQ=255)
accacTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCTCAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTg > 1:6555352/1‑93 (MQ=255)
acTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCa < 2:2835337/93‑1 (MQ=255)
cTGCGACCCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAg < 2:128983/93‑1 (MQ=255)
cTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAg > 2:507759/1‑93 (MQ=255)
tGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGc > 2:1035369/1‑93 (MQ=255)
gCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGcc < 2:3464423/93‑1 (MQ=255)
cGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCg > 2:525129/1‑93 (MQ=255)
cGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCg < 1:2624423/93‑1 (MQ=255)
gAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGt > 1:525793/1‑93 (MQ=255)
gAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGt < 2:2733604/93‑1 (MQ=255)
aaCCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTa > 2:4698507/1‑93 (MQ=255)
aaCCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTa > 1:4310244/1‑93 (MQ=255)
aaCCGCCAGACTTATTGGCGTACACACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTa > 1:4116746/1‑93 (MQ=255)
cGCCAGACTTATGGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGat < 2:3926754/93‑1 (MQ=255)
gCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGata > 1:3603165/1‑93 (MQ=255)
gCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGata > 2:4953081/1‑93 (MQ=255)
ccAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGatat < 1:6521839/93‑1 (MQ=255)
gACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGc < 2:1097353/93‑1 (MQ=255)
aCTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGcc > 2:4365150/1‑93 (MQ=255)
ttATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCaa < 1:2036193/93‑1 (MQ=255)
aTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATg > 2:5555434/1‑93 (MQ=255)
ttGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGt > 2:3727285/1‑93 (MQ=255)
ttGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGt < 2:3281756/93‑1 (MQ=255)
ttGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGt < 2:3097454/93‑1 (MQ=255)
gggCGGACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTc < 2:2381521/92‑1 (MQ=255)
ggCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTcg > 1:1356836/1‑93 (MQ=255)
gCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATACCTACGCGGTTGCCAGCCGTAGATATCGCCAATGTcgc > 2:1958011/1‑93 (MQ=255)
cGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTcgcg > 2:5480837/1‑93 (MQ=255)
gTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGGAGATATCGCTAATATCgcgc > 1:4810899/1‑93 (MQ=255)
tccgcacgcCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGcc < 1:27081/91‑1 (MQ=255)
tACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGcc > 1:3156032/1‑93 (MQ=255)
cgcacgcCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCg < 1:599206/93‑1 (MQ=255)
cacgcCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGAc > 1:6600837/1‑93 (MQ=255)
acgcCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGAcc > 2:4112701/1‑93 (MQ=255)
acgcCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGAcc < 1:4491953/93‑1 (MQ=255)
cgcCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCa > 2:4464295/1‑93 (MQ=255)
cgcCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCa > 1:4203836/1‑93 (MQ=255)
gcCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCAt > 1:2270150/1‑93 (MQ=255)
gcCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCAt > 1:6374618/1‑93 (MQ=255)
ccTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATc > 2:2921273/1‑93 (MQ=255)
ccTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATc > 2:4218481/1‑93 (MQ=255)
ggTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGcc < 2:5099316/93‑1 (MQ=255)
ggTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGcc > 1:1587256/1‑93 (MQ=255)
gTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCt < 1:2534145/93‑1 (MQ=255)
tGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTTCGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTg > 2:3564552/1‑93 (MQ=255)
tGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTg < 1:2275318/93‑1 (MQ=255)
tGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTg < 1:2300223/93‑1 (MQ=255)
cTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCa > 2:2280773/1‑93 (MQ=255)
tttCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCACCTGCAc > 2:4131046/1‑93 (MQ=255)
cacaGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAg < 2:5038161/93‑1 (MQ=255)
acaGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAgc > 1:4099367/1‑93 (MQ=255)
gCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGcgcg > 1:816361/1‑93 (MQ=255)
aTCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGcgtc < 1:4622553/93‑1 (MQ=255)
tCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGcgtcg > 1:1913425/1‑93 (MQ=255)
cAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTTCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGcgtcgt < 2:1928922/93‑1 (MQ=255)
cAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGcgtcgt < 1:3965806/93‑1 (MQ=255)
aaGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTg < 1:3307759/93‑1 (MQ=255)
aaGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTg < 2:4786507/93‑1 (MQ=255)
aaGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTg > 1:3873604/1‑93 (MQ=255)
aGACGTAGGCGCTCCTCGTCATACCTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTgg < 2:39022/93‑1 (MQ=255)
aGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTgg > 1:1786733/1‑93 (MQ=255)
gACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGt > 2:75720/1‑93 (MQ=255)
gACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGt > 1:3134863/1‑93 (MQ=255)
aCGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTc < 2:60766/93‑1 (MQ=255)
cGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCa < 2:2145073/93‑1 (MQ=255)
cGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCa < 2:808691/93‑1 (MQ=255)
cGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCa > 1:4555342/1‑93 (MQ=255)
gTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCaa > 2:5729305/1‑93 (MQ=255)
tAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAAc < 2:6359783/93‑1 (MQ=255)
tAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAAc < 1:3034668/93‑1 (MQ=255)
aGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAAcc < 2:5176672/93‑1 (MQ=255)
aGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAAcc < 1:5496767/93‑1 (MQ=255)
aGGCCCTCCTCGTCATATCTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAAcc < 2:153830/93‑1 (MQ=255)
ggCGCTCTTCTTCATAACTACGCGGTGCCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACct < 1:4944533/93‑1 (MQ=255)
cgcTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACctgc < 2:41448/93‑1 (MQ=255)
gcTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACctgct > 2:1792717/1‑93 (MQ=255)
ctcctcGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACctgctg > 2:824174/1‑93 (MQ=255)
tcctcGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCtgctgc < 1:286015/93‑1 (MQ=255)
cctcGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCa < 2:4606539/93‑1 (MQ=255)
cctcGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCa < 2:1904235/93‑1 (MQ=255)
cctcGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCa < 2:647128/93‑1 (MQ=255)
ctcGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCat < 1:1058256/93‑1 (MQ=255)
tcGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCata < 2:3919024/93‑1 (MQ=255)
|
AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATA > NC_000913/1982233‑1982412
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATCG > NC_000913/1982232‑1982415
|
CAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCA < SRR4302547.353219/94‑1 (MQ=60)
AGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCAT > SRR4302547.2533131/1‑94 (MQ=60)
GCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATA > SRR4302547.3509322/1‑94 (MQ=60)
CCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAA > SRR4302547.3822969/1‑94 (MQ=60)
CCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAA > SRR4302547.5737732/1‑94 (MQ=60)
CCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAAC < SRR4302547.2758039/94‑1 (MQ=60)
CCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAAC > SRR4302547.5539921/1‑94 (MQ=60)
CAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACT > SRR4302547.4991019/1‑94 (MQ=60)
AACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTA < SRR4302547.302578/94‑1 (MQ=60)
AACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTCTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTA > SRR4302547.52769/1‑94 (MQ=60)
AAATTACACCACTGCAAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACG < SRR4302547.2441793/94‑1 (MQ=60)
AATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGC < SRR4302547.691572/94‑1 (MQ=60)
ATTTCACCCCTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCG < SRR4302547.5876379/94‑1 (MQ=60)
TTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGT > SRR4302547.2914160/1‑94 (MQ=60)
TCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTT < SRR4302547.1159712/94‑1 (MQ=60)
TCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTT < SRR4302547.3887955/94‑1 (MQ=60)
TCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTT > SRR4302547.2816263/1‑94 (MQ=60)
CACCCCTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTA < SRR4302547.1541499/94‑1 (MQ=60)
CACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCTCAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTG > SRR4302547.6691855/1‑94 (MQ=60)
CACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTG > SRR4302547.846050/1‑94 (MQ=60)
CACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTG < SRR4302547.4239390/94‑1 (MQ=60)
ACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGC > SRR4302547.2014598/1‑94 (MQ=60)
ACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGC > SRR4302547.4206718/1‑94 (MQ=60)
CCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCC > SRR4302547.3268099/1‑94 (MQ=60)
CACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCA > SRR4302547.3065224/1‑94 (MQ=60)
ACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAG > SRR4302547.4096170/1‑94 (MQ=60)
TGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCC > SRR4302547.783750/1‑94 (MQ=60)
TGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCC > SRR4302547.188857/1‑94 (MQ=60)
TGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCC < SRR4302547.1633191/94‑1 (MQ=60)
GCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCG > SRR4302547.2471376/1‑94 (MQ=60)
GCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCG < SRR4302547.1476333/94‑1 (MQ=60)
GCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCG > SRR4302547.3927785/1‑94 (MQ=60)
CGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGT < SRR4302547.2677289/94‑1 (MQ=60)
CGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGT > SRR4302547.535300/1‑94 (MQ=60)
CGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGT < SRR4302547.3178618/94‑1 (MQ=60)
GAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTA > SRR4302547.4398909/1‑94 (MQ=60)
GAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTA > SRR4302547.4178821/1‑94 (MQ=60)
GAACCGCCAGACTTATTGGCGTACACACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTA > SRR4302547.4200418/1‑94 (MQ=60)
cgcgcGACTTTTTGGCGGACGCACCCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATACCTACGCGGTTGCCAGCCGTAGATA < SRR4302547.383445/89‑1 (MQ=60)
CGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATA > SRR4302547.3676639/1‑94 (MQ=60)
CGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATA > SRR4302547.307549/1‑94 (MQ=60)
CCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATC > SRR4302547.4348332/1‑94 (MQ=60)
CCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATC < SRR4302547.1547087/94‑1 (MQ=60)
CCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATC < SRR4302547.6657610/94‑1 (MQ=60)
CAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCG > SRR4302547.6660834/1‑94 (MQ=60)
GCCTTATTGGCGTCCGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCC < SRR4302547.1671916/94‑1 (MQ=60)
TTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAAT < SRR4302547.2076777/94‑1 (MQ=60)
TATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGCCGTAAGCGCTCCTCGCCATAACTACGCCGTTGCCAGCCGTAGATATagcaagtg > SRR4302547.904366/1‑86 (MQ=60)
ATTGGCGTACGCACGCCTGGTGCGTTCATAGCATCAAGTCGGAGGCGCTCCTCGTCATTACGATTCGGTGGCCAGCCGGAGATATCGCCAATGT > SRR4302547.6791244/1‑94 (MQ=32)
TTGGCGTACGGACGCCTGTTGCTGTCACAGCAGCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTA < SRR4302547.3268104/94‑1 (MQ=60)
TGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCG > SRR4302547.1384062/1‑94 (MQ=60)
GCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCG < SRR4302547.4996975/94‑1 (MQ=60)
CGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGGAGATATCGCTAATATCGCGC > SRR4302547.4910611/1‑94 (MQ=60)
GTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCC < SRR4302547.5002740/94‑1 (MQ=60)
GTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCC > SRR4302547.3218792/1‑94 (MQ=60)
TCCGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCC < SRR4302547.27576/94‑1 (MQ=60)
TACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGACC > SRR4302547.3585147/1‑94 (MQ=60)
CGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGA < SRR4302547.610256/94‑1 (MQ=60)
GCACGCCTGGTGCTTTCACAGCATCAAGACGTAGTCGCTCCTCGTCATAACTGCGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGAC < SRR4302547.6624825/94‑1 (MQ=60)
GCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGAC > SRR4302547.6738237/1‑94 (MQ=60)
CACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACC < SRR4302547.6696866/94‑1 (MQ=60)
ACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCA < SRR4302547.4584742/94‑1 (MQ=60)
ACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCA < SRR4302547.3706767/94‑1 (MQ=60)
ACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCA > SRR4302547.4289601/1‑94 (MQ=60)
CGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCAT > SRR4302547.6507617/1‑94 (MQ=60)
CGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCAT > SRR4302547.2316059/1‑94 (MQ=60)
CCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCG > SRR4302547.4701869/1‑94 (MQ=60)
CCTGGTGCTGTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCG > SRR4302547.6636284/1‑94 (MQ=60)
CTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGC > SRR4302547.458548/1‑94 (MQ=60)
TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCC > SRR4302547.4273956/1‑94 (MQ=60)
TGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCC > SRR4302547.1618806/1‑94 (MQ=60)
GGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCT < SRR4302547.5961983/94‑1 (MQ=60)
GTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTG < SRR4302547.4320536/94‑1 (MQ=60)
GTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTG > SRR4302547.2947671/1‑94 (MQ=60)
GTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTG < SRR4302547.2585357/94‑1 (MQ=60)
TGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGC < SRR4302547.2321334/94‑1 (MQ=60)
TGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGC < SRR4302547.2346841/94‑1 (MQ=60)
TGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGC < SRR4302547.2736342/94‑1 (MQ=60)
CTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCAC > SRR4302547.6581195/1‑94 (MQ=60)
TTTCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACC > SRR4302547.2111434/1‑94 (MQ=60)
TCACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAG > SRR4302547.4871617/1‑94 (MQ=60)
CACAGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGC > SRR4302547.4182734/1‑94 (MQ=60)
AGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGGG > SRR4302547.2317255/1‑94 (MQ=60)
AGCATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCG > SRR4302547.831865/1‑94 (MQ=60)
CATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTC > SRR4302547.4421246/1‑94 (MQ=60)
CATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTC > SRR4302547.233051/1‑94 (MQ=60)
ATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCG > SRR4302547.1951280/1‑94 (MQ=60)
ATCAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCG < SRR4302547.4718275/94‑1 (MQ=60)
CAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTG < SRR4302547.4046458/94‑1 (MQ=60)
CAAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTG < SRR4302547.2672220/94‑1 (MQ=60)
CAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTG > SRR4302547.3952435/1‑94 (MQ=60)
AAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGG < SRR4302547.3374446/94‑1 (MQ=60)
AAGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGG > SRR4302547.1822112/1‑94 (MQ=60)
AGACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGT > SRR4302547.3197109/1‑94 (MQ=60)
GACGTAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTC < SRR4302547.4018838/94‑1 (MQ=60)
ACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCA > SRR4302547.4649577/1‑94 (MQ=60)
GTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGCGGTCAAC > SRR4302547.4959868/1‑94 (MQ=60)
TAGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACC > SRR4302547.257892/1‑94 (MQ=60)
TAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACC < SRR4302547.3095030/94‑1 (MQ=60)
AGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCT < SRR4302547.5610257/94‑1 (MQ=60)
AGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCT < SRR4302547.2211976/94‑1 (MQ=60)
AGGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCT > SRR4302547.2763714/1‑94 (MQ=60)
GGCGCTCTTCTTCATAACTACGCGGTGCCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTG < SRR4302547.5046932/94‑1 (MQ=60)
GGCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTG < SRR4302547.5612338/94‑1 (MQ=60)
GCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGC < SRR4302547.4199634/94‑1 (MQ=60)
GCGCTCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGGCAACCTGC > SRR4302547.6424911/1‑94 (MQ=60)
TCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCA < SRR4302547.291334/94‑1 (MQ=60)
TCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCA > SRR4302547.4689660/1‑94 (MQ=60)
TCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCA < SRR4302547.319572/94‑1 (MQ=60)
TCCTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTAGTCAACCTGCTGCA > SRR4302547.3466333/1‑94 (MQ=60)
CTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATA < SRR4302547.827007/94‑1 (MQ=60)
CTCGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATA < SRR4302547.1079299/94‑1 (MQ=60)
CGTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATC < SRR4302547.4184764/94‑1 (MQ=60)
GTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATCG < SRR4302547.6728443/94‑1 (MQ=60)
GTCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATCG < SRR4302547.5811721/94‑1 (MQ=60)
|
CAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATCG > NC_000913/1982232‑1982415
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
