Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,216,746	G→C	S252S (TCC→TCG)	yehZ ←	putative transport system permease protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,216,746	0	G	C	100.0%	844.2 / NA	232	S252S (TCC→TCG)	yehZ	putative transport system permease protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (133/99); total (133/99)

Only 100 of 243 total aligned reads displayed.

GCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACGGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCC  >  NC_000913/2216656‑2216835

 cTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGAc                                                                                        >  2:3802325/1‑93 (MQ=255)

   ggCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTc                                                                                      >  2:51588/1‑93 (MQ=255)

    gCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCa                                                                                     <  1:4170395/93‑1 (MQ=255)

     cATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCAc                                                                                    >  2:523692/1‑93 (MQ=255)

     cATGCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGGCTGGCTGTAGCCACTGTGCCATTTGCGGATGCTCCCTCAACACCGACTCAc                                                                                    <  1:4379267/93‑1 (MQ=255)

       ttCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCCTTTGCGGATACTCCCTCAACACCGACTCACGc                                                                                  >  1:1392125/1‑93 (MQ=255)

       ttCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGc                                                                                  <  1:3320380/93‑1 (MQ=255)

       ttCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGc                                                                                  >  1:3889719/1‑93 (MQ=255)

       ttCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGc                                                                                  <  2:1783227/93‑1 (MQ=255)

       ttCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGc                                                                                  >  1:2187446/1‑93 (MQ=255)

         cAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGcac                                                                                >  1:374627/1‑93 (MQ=255)

         cAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGcac                                                                                >  2:5664535/1‑93 (MQ=255)

           gTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGcacca                                                                              >  1:2849416/1‑93 (MQ=255)

            ttGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGcaccac                                                                             <  2:1124492/93‑1 (MQ=255)

             tgctgcAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACt                                                                            <  2:2013487/93‑1 (MQ=255)

             tgctgcAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACt                                                                            <  2:1642266/93‑1 (MQ=255)

              gctgcAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTg                                                                           <  2:777209/93‑1 (MQ=255)

              gctgcAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTg                                                                           <  1:3469488/93‑1 (MQ=255)

              gctgcAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTg                                                                           >  2:1425993/1‑93 (MQ=255)

               ctgcAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTgg                                                                          <  1:6524466/93‑1 (MQ=255)

                 gcAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCCTTTGCGGATAATCCCTCAACACCGACTCACGCACCACTGGTg                                                                        >  2:6353226/1‑93 (MQ=255)

                   aaTGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCa                                                                      >  2:2450997/1‑93 (MQ=255)

                   aaTGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCa                                                                      <  1:3239069/93‑1 (MQ=255)

                    aTGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAg                                                                     >  2:504815/1‑93 (MQ=255)

                       tttttGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGgcg                                                                  >  1:2134704/1‑93 (MQ=255)

                       tttttGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGgcg                                                                  >  1:5045625/1‑93 (MQ=255)

                            gCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAg                                                             >  1:3959560/1‑93 (MQ=255)

                             cATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTTACGCACCACTGGTGCAGGCGCGTAGa                                                            <  2:3394864/93‑1 (MQ=255)

                             cATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGa                                                            <  2:6104590/93‑1 (MQ=255)

                               tCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATa                                                          <  2:1350633/93‑1 (MQ=255)

                                cGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACCCCGACTCACGCACCACTGGTGCAGGCGCGTAGATAg                                                         <  2:4346484/93‑1 (MQ=255)

                                 gAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATaag                                                        >  1:3773935/1‑91 (MQ=255)

                                 gAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAgg                                                        >  1:4706101/1‑93 (MQ=255)

                                  aGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCATGCGCGTAGATAGGt                                                       >  1:835529/1‑93 (MQ=255)

                                  aGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGt                                                       >  2:2503618/1‑93 (MQ=255)

                                   ggCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGtt                                                      >  2:2803583/1‑93 (MQ=255)

                                    gCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGGTg                                                     >  1:4633924/1‑93 (MQ=255)

                                     cTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTATATAGGTTGc                                                    <  1:1521757/93‑1 (MQ=255)

                                     cTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGc                                                    <  1:5943018/93‑1 (MQ=255)

                                      tGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGca                                                   >  1:1743372/1‑93 (MQ=255)

                                      tGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGCTGCAGGCGCGTAGATAGGCTGca                                                   >  2:2144048/1‑93 (MQ=255)

                                       ggCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGcac                                                  >  1:186878/1‑93 (MQ=255)

                                         cGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCacac                                                >  1:1129834/1‑93 (MQ=255)

                                           aaGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCt                                              >  1:4654083/1‑93 (MQ=255)

                                           aaGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCt                                              <  1:253161/93‑1 (MQ=255)

                                           aaGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCt                                              >  2:109438/1‑93 (MQ=255)

                                            aGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCtt                                             <  1:5204601/93‑1 (MQ=255)

                                            aGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCtt                                             <  2:4239036/93‑1 (MQ=255)

                                            aGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCtt                                             <  1:2635368/93‑1 (MQ=255)

                                            aGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCtt                                             <  1:2442910/93‑1 (MQ=255)

                                             gACTGGCTGTAGCCACTGTGCCATTTGCGGATCCTCCCTCAACTCCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTg                                            <  1:5746490/93‑1 (MQ=255)

                                             gACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTg                                            <  2:87514/93‑1 (MQ=255)

                                              aCTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGc                                           >  1:786228/1‑93 (MQ=255)

                                              aCTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGAGCGTAGATAGGTTGCACACCTTGc                                           >  1:2354794/1‑93 (MQ=255)

                                               cTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCg                                          >  2:530726/1‑93 (MQ=255)

                                               cTGGCTGTAGCCACTGTGCCATGTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCg                                          <  1:6144319/93‑1 (MQ=255)

                                                  gCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGAt                                       >  2:4916280/1‑93 (MQ=255)

                                                   cTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACTCCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATc                                      <  2:2526531/93‑1 (MQ=255)

                                                   cTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATc                                      >  2:1689540/1‑93 (MQ=255)

                                                      tAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCt                                   <  1:953069/93‑1 (MQ=255)

                                                      tAGCCACTGTGCCATTCGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCt                                   >  1:1232007/1‑93 (MQ=255)

                                                       aGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCtt                                  >  1:2998131/1‑93 (MQ=255)

                                                        gCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTa                                 >  2:3651891/1‑93 (MQ=255)

                                                           aCTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAgg                              >  1:4892664/1‑93 (MQ=255)

                                                              gtgCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGttt                           >  1:120854/1‑93 (MQ=255)

                                                              gtgCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGttt                           <  1:2282443/93‑1 (MQ=255)

                                                              gtgCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGttt                           <  2:2970851/93‑1 (MQ=255)

                                                               tgCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTg                          <  2:4039274/93‑1 (MQ=255)

                                                                 ccATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCa                        >  1:5112026/1‑93 (MQ=255)

                                                                 ccATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCa                        >  2:5950850/1‑93 (MQ=255)

                                                                 ccATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCa                        <  1:6442168/93‑1 (MQ=255)

                                                                   aTTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGc                      >  2:606711/1‑93 (MQ=255)

                                                                   aTTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGc                      <  1:1643964/93‑1 (MQ=255)

                                                                   aTTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGc                      >  2:2197856/1‑93 (MQ=255)

                                                                    tttGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGcc                     <  1:5329333/93‑1 (MQ=255)

                                                                     ttGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGccc                    <  1:2829195/93‑1 (MQ=255)

                                                                     ttGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGccc                    <  1:3594752/93‑1 (MQ=255)

                                                                     ttGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGccc                    <  2:2044976/93‑1 (MQ=255)

                                                                      tGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGcccc                   <  1:1554858/93‑1 (MQ=255)

                                                                       gCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCa                  <  2:1013556/93‑1 (MQ=255)

                                                                        cGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAg                 >  2:4718998/1‑93 (MQ=255)

                                                                          gATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAgcg               >  1:5592602/1‑93 (MQ=255)

                                                                          gATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGGAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAgcg               >  1:4552691/1‑93 (MQ=255)

                                                                           aTACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAgcgc              <  1:1378211/93‑1 (MQ=255)

                                                                              cTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGcgccgc           >  2:6172529/1‑93 (MQ=255)

                                                                               tCCCTCAACACCGGCTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCt          >  1:6384932/1‑93 (MQ=255)

                                                                               tCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCt          >  2:4414726/1‑93 (MQ=255)

                                                                               tCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCt          <  2:2562572/93‑1 (MQ=255)

                                                                               tCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCt          >  2:348989/1‑93 (MQ=255)

                                                                                cccTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCtc         >  2:5631919/1‑92 (MQ=255)

                                                                                cccTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTa         <  2:4449434/93‑1 (MQ=255)

                                                                                 ccTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTAc        <  2:5810794/93‑1 (MQ=255)

                                                                                 ccTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTAc        >  1:5994769/1‑93 (MQ=255)

                                                                                  cTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTAcc       >  2:5910682/1‑93 (MQ=255)

                                                                                    cAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCgg     <  2:3240751/93‑1 (MQ=255)

                                                                                     aaCACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCggg    >  1:715430/1‑93 (MQ=255)

                                                                                      acacCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGc   >  2:2870462/1‑93 (MQ=255)

                                                                                      acacCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGc   >  1:5361819/1‑93 (MQ=255)

                                                                                      acacCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGc   <  2:4599104/93‑1 (MQ=255)

                                                                                       cacCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGcc  >  2:3113521/1‑93 (MQ=255)

GCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACGGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCC  >  NC_000913/2216656‑2216835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AATGCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACGGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCCGTCA  >  NC_000913/2216653‑2216839

AATGCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACC                                                                                               >  SRR4302547.5031429/1‑94 (MQ=60)

AATGCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACC                                                                                               >  SRR4302547.1272301/1‑94 (MQ=60)

 ATGCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCG                                                                                              <  SRR4302547.4120622/94‑1 (MQ=60)

  TGCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGA                                                                                             >  SRR4302547.3045045/1‑94 (MQ=60)

  TGCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGA                                                                                             <  SRR4302547.2318098/94‑1 (MQ=60)

    CTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACT                                                                                           >  SRR4302547.3555289/1‑94 (MQ=60)

       GCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCAC                                                                                        <  SRR4302547.4255342/94‑1 (MQ=60)

        CATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACG                                                                                       >  SRR4302547.4694284/1‑94 (MQ=60)

        CATGCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGGCTGGCTGTAGCCACTGTGCCATTTGCGGATGCTCCCTCAACACCGACTCACG                                                                                       <  SRR4302547.4469290/94‑1 (MQ=60)

         ATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCCTTTGCGGATACTCCCTCAACACCGACTCACGC                                                                                      >  SRR4302547.1419983/1‑94 (MQ=60)

         ATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGC                                                                                      >  SRR4302547.3968831/1‑94 (MQ=60)

         ATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGC                                                                                      >  SRR4302547.2231316/1‑94 (MQ=60)

          TTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCA                                                                                     <  SRR4302547.3387451/94‑1 (MQ=60)

           TCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCAC                                                                                    >  SRR4302547.381568/1‑94 (MQ=60)

             AGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCA                                                                                  <  SRR4302547.822354/94‑1 (MQ=60)

             AGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCA                                                                                  >  SRR4302547.2906345/1‑94 (MQ=60)

                 GCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGG                                                                              <  SRR4302547.3540239/94‑1 (MQ=60)

                 GCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACAGGCTGTAGCCACTGCGCCATTTGCGGCTACTCCCTCAAAACCGACTCACcacaccaccg                                                                              >  SRR4302547.3525380/1‑84 (MQ=60)

                  CTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGT                                                                             <  SRR4302547.6660293/94‑1 (MQ=60)

                   TGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTG                                                                            >  SRR4302547.3949721/1‑94 (MQ=60)

                     CAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCA                                                                          >  SRR4302547.5449376/1‑94 (MQ=60)

                     CAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCA                                                                          <  SRR4302547.4638973/94‑1 (MQ=60)

                     CAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCA                                                                          >  SRR4302547.787366/1‑94 (MQ=60)

                      AATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAG                                                                         <  SRR4302547.3303725/94‑1 (MQ=60)

                      AATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAG                                                                         >  SRR4302547.3069295/1‑94 (MQ=60)

                      AATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAG                                                                         <  SRR4302547.2191792/94‑1 (MQ=60)

                       ATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGG                                                                        <  SRR4302547.5246760/94‑1 (MQ=60)

                        TGTTTTTGCATCAAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGC                                                                       >  SRR4302547.6550828/1‑94 (MQ=60)

                         GTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCG                                                                      >  SRR4302547.2177222/1‑94 (MQ=60)

                         GTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCG                                                                      >  SRR4302547.5149806/1‑94 (MQ=60)

                          TTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGC                                                                     >  SRR4302547.4130926/1‑94 (MQ=60)

                            TTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGT                                                                   <  SRR4302547.5665729/94‑1 (MQ=60)

                            TTTGCATCGAGGCTAGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATAATCCCTCAACACCGACTCACGCACCACGGGTGCAGGCGCGT                                                                   >  SRR4302547.4235589/1‑94 (MQ=60)

                             TTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATGCTCCCTAAACACCGACTCACGCACCACTGGTGCAGGCGCGTA                                                                  <  SRR4302547.341288/94‑1 (MQ=60)

                              TGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAG                                                                 >  SRR4302547.4040106/1‑94 (MQ=60)

                                CATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGAT                                                               >  SRR4302547.2434698/1‑94 (MQ=60)

                                CATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGAT                                                               >  SRR4302547.240907/1‑94 (MQ=60)

                                 ATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATA                                                              >  SRR4302547.5431451/1‑94 (MQ=60)

                                 ATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATA                                                              <  SRR4302547.2113196/94‑1 (MQ=60)

                                   CGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGG                                                            >  SRR4302547.4803558/1‑94 (MQ=60)

                                   CGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAAG                                                            >  SRR4302547.3850905/1‑94 (MQ=60)

                                    GAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCATGCGCGTAGATAGGT                                                           >  SRR4302547.851476/1‑94 (MQ=60)

                                    GAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGT                                                           >  SRR4302547.6775799/1‑94 (MQ=60)

                                     AGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTT                                                          <  SRR4302547.4736747/94‑1 (MQ=60)

                                     AGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTT                                                          >  SRR4302547.1461692/1‑94 (MQ=60)

                                     AGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTT                                                          <  SRR4302547.607763/94‑1 (MQ=60)

                                     AGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAAGTT                                                          >  SRR4302547.1978100/1‑94 (MQ=60)

                                      GGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGGTG                                                         >  SRR4302547.4729918/1‑94 (MQ=60)

                                        CTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTATATAGGTTGCA                                                       <  SRR4302547.1552056/94‑1 (MQ=60)

                                        CTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCA                                                       >  SRR4302547.1777713/1‑94 (MQ=60)

                                        CTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCA                                                       <  SRR4302547.6066250/94‑1 (MQ=60)

                                         TGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCAC                                                      >  SRR4302547.190394/1‑94 (MQ=60)

                                           GCGAGAACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACAC                                                    <  SRR4302547.799902/94‑1 (MQ=60)

                                           GCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACAC                                                    >  SRR4302547.1152638/1‑94 (MQ=60)

                                            CGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACC                                                   >  SRR4302547.5659669/1‑94 (MQ=60)

                                             GAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCT                                                  >  SRR4302547.4750476/1‑94 (MQ=60)

                                             GAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCT                                                  >  SRR4302547.1448419/1‑94 (MQ=60)

                                              AAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTT                                                 <  SRR4302547.1231152/94‑1 (MQ=60)

                                              AAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTT                                                 <  SRR4302547.257898/94‑1 (MQ=60)

                                               AGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTG                                                <  SRR4302547.2492321/94‑1 (MQ=60)

                                               AGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTG                                                <  SRR4302547.5311701/94‑1 (MQ=60)

                                               AGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTG                                                >  SRR4302547.3802849/1‑94 (MQ=60)

                                               AGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTG                                                <  SRR4302547.2688440/94‑1 (MQ=60)

                                               AGACCGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTG                                                >  SRR4302547.6631148/1‑94 (MQ=60)

                                                GACTGGCTGTAGCCACTGTGCCATTTGCGGATCCTCCCTCAACTCCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGC                                               <  SRR4302547.5865263/94‑1 (MQ=60)

                                                GACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGC                                               >  SRR4302547.6602397/1‑94 (MQ=60)

                                                GACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGC                                               >  SRR4302547.801110/1‑94 (MQ=60)

                                                GACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGAGCGTAGATAGGTTGCACACCTTGC                                               >  SRR4302547.2402511/1‑94 (MQ=60)

                                                  CTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGG                                             <  SRR4302547.615640/94‑1 (MQ=60)

                                                  CTGGCTGTAGCCACTGTGCCATGTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGG                                             <  SRR4302547.6271802/94‑1 (MQ=60)

                                                   TGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGA                                            >  SRR4302547.3683215/1‑94 (MQ=60)

                                                    GGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGAT                                           >  SRR4302547.2887641/1‑94 (MQ=60)

                                                      CTGTAGCCACTGTGCCATTTTCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCG                                         <  SRR4302547.998898/94‑1 (MQ=60)

                                                       TGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGC                                        >  SRR4302547.1278874/1‑94 (MQ=60)

                                                        GTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCT                                       <  SRR4302547.6035243/94‑1 (MQ=60)

                                                        GTAGCCACTGTGCCATTCGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCT                                       >  SRR4302547.1256856/1‑94 (MQ=60)

                                                         TAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTT                                      <  SRR4302547.971579/94‑1 (MQ=60)

                                                         TAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTT                                      >  SRR4302547.3057761/1‑94 (MQ=60)

                                                         TAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTT                                      <  SRR4302547.4721199/94‑1 (MQ=60)

                                                          AGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTA                                     >  SRR4302547.2648492/1‑94 (MQ=60)

                                                          AGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTA                                     <  SRR4302547.768890/94‑1 (MQ=60)

                                                            CCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAG                                   <  SRR4302547.1256210/94‑1 (MQ=60)

                                                             CACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGG                                  >  SRR4302547.1327761/1‑94 (MQ=60)

                                                             CACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGG                                  >  SRR4302547.3052027/1‑94 (MQ=60)

                                                             CACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGG                                  <  SRR4302547.4921374/94‑1 (MQ=60)

                                                             CACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGG                                  >  SRR4302547.4993991/1‑94 (MQ=60)

                                                                TGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTT                               <  SRR4302547.5831163/94‑1 (MQ=60)

                                                                TGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTT                               >  SRR4302547.123057/1‑94 (MQ=60)

                                                                TGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTT                               <  SRR4302547.5129901/94‑1 (MQ=60)

                                                                 GTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTG                              <  SRR4302547.2328646/94‑1 (MQ=60)

                                                                 GTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTG                              >  SRR4302547.517614/1‑94 (MQ=60)

                                                                  TGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGC                             <  SRR4302547.5324236/94‑1 (MQ=60)

                                                                   GCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCA                            >  SRR4302547.5217373/1‑94 (MQ=60)

                                                                   GCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCA                            >  SRR4302547.4771848/1‑94 (MQ=60)

                                                                    CCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAG                           >  SRR4302547.5016084/1‑94 (MQ=60)

                                                                    CCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAG                           <  SRR4302547.6576420/94‑1 (MQ=60)

                                                                    CCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAG                           <  SRR4302547.6438032/94‑1 (MQ=60)

                                                                    CCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAG                           <  SRR4302547.3325542/94‑1 (MQ=60)

                                                                      ATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCC                         <  SRR4302547.2396922/94‑1 (MQ=60)

                                                                      ATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCC                         <  SRR4302547.1676449/94‑1 (MQ=60)

                                                                      ATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCC                         <  SRR4302547.1729722/94‑1 (MQ=60)

                                                                       TTTGCGGATACTCCCTCAGCACCGACTCACTCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCA                        <  SRR4302547.3307443/94‑1 (MQ=60)

                                                                       TTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCC                        <  SRR4302547.5439181/94‑1 (MQ=60)

                                                                       TTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCC                        >  SRR4302547.2254791/1‑94 (MQ=60)

                                                                        TTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCC                       <  SRR4302547.2885772/94‑1 (MQ=60)

                                                                        TTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCC                       <  SRR4302547.3668071/94‑1 (MQ=60)

                                                                        TTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCC                       >  SRR4302547.6496372/1‑94 (MQ=60)

                                                                         TGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCA                      <  SRR4302547.1585793/94‑1 (MQ=60)

                                                                         TGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCA                      <  SRR4302547.3930754/94‑1 (MQ=60)

                                                                         TGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCA                      <  SRR4302547.2535286/94‑1 (MQ=60)

                                                                         TGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCA                      <  SRR4302547.2865468/94‑1 (MQ=60)

                                                                           CGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGC                    <  SRR4302547.2244120/94‑1 (MQ=60)

                                                                           CGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGC                    >  SRR4302547.1673770/1‑94 (MQ=60)

                                                                            GGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCG                   >  SRR4302547.5707974/1‑94 (MQ=60)

                                                                            GGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCG                   >  SRR4302547.1634276/1‑94 (MQ=60)

                                                                            GGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGGAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCG                   >  SRR4302547.4646866/1‑94 (MQ=60)

                                                                             GATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGC                  <  SRR4302547.2884014/94‑1 (MQ=60)

                                                                              ATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCC                 >  SRR4302547.1847671/1‑94 (MQ=60)

                                                                              ATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCC                 <  SRR4302547.1405840/94‑1 (MQ=60)

                                                                                 CTCCCTCAACACCGGCTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCT              >  SRR4302547.6518165/1‑94 (MQ=60)

                                                                                 CTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCT              <  SRR4302547.3828894/94‑1 (MQ=60)

                                                                                 CTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGGAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCT              >  SRR4302547.5977321/1‑94 (MQ=60)

                                                                                   CCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTAC            >  SRR4302547.1017615/1‑94 (MQ=60)

                                                                                   CCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTAC            >  SRR4302547.8941/1‑94 (MQ=60)

                                                                                   CCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTAC            >  SRR4302547.6119167/1‑94 (MQ=60)

                                                                                    CCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACC           >  SRR4302547.1560635/1‑94 (MQ=60)

                                                                                    CCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACC           <  SRR4302547.4341075/94‑1 (MQ=60)

                                                                                     CTCAACACCGACTCACGCACCGCTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCCCCGCTACCG          <  SRR4302547.3512917/94‑1 (MQ=60)

                                                                                       CAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGG        >  SRR4302547.728674/1‑94 (MQ=60)

                                                                                        AACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGC       >  SRR4302547.5472416/1‑94 (MQ=60)

                                                                                         ACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCC      <  SRR4302547.475800/94‑1 (MQ=60)

                                                                                         ACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCC      <  SRR4302547.4022241/94‑1 (MQ=60)

                                                                                             CGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCCGTCA  <  SRR4302547.1962089/94‑1 (MQ=60)

AATGCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACGGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCCGTCA  >  NC_000913/2216653‑2216839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`