Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,273,779 |
(G)5→6 |
coding (487/1026 nt) |
yejE → |
putative transport system permease protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,273,774 | 1 | . | G | 87.2%
| 604.2
/ 78.5
| 189 | coding (482/1026 nt) | yejE | putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base . (12/12); new base G (76/88); total (88/101) |
| Fisher's exact test for biased strand distribution p-value = 8.28e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.69e-01 |
Only 100 of 231 total aligned reads displayed.
CGATGTGCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGA > NC_000913/2273682‑2273866
|
cgATGTGCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑c > 2:2251707/1‑93 (MQ=255)
aTGTGCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTTATGGCCGTGCTGG‑C‑gg < 1:4440867/93‑1 (MQ=255)
aTGTGCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑gg < 2:1001089/93‑1 (MQ=255)
tgtgCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑ggg < 2:2884961/93‑1 (MQ=255)
gtgCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑gggg < 1:4592937/93‑1 (MQ=255)
gtgCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑gggg < 1:2130618/93‑1 (MQ=255)
gCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑gggggg > 1:4229154/1‑92 (MQ=255)
gCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑gggggg > 1:3535016/1‑92 (MQ=255)
cTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑ggggggg > 1:6309630/1‑91 (MQ=255)
cTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑ggggggc < 2:4060516/93‑3 (MQ=255)
cTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑ggggggc < 2:5688696/93‑3 (MQ=255)
ggCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑ggggggcgc < 2:4777630/93‑5 (MQ=255)
aCGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTAc < 1:6112248/93‑1 (MQ=255)
gCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACaa < 1:899793/93‑1 (MQ=255)
cATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAg < 1:2955193/93‑1 (MQ=255)
aTTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGGGGCGCTACAAGGc < 1:1705899/93‑1 (MQ=255)
ttCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGc < 1:5478994/93‑1 (MQ=255)
ttCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGc < 1:1241824/93‑1 (MQ=255)
tctcTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCt > 2:5440022/1‑93 (MQ=255)
tctcTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCt < 2:2317919/93‑1 (MQ=255)
tctcTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCt < 2:348074/93‑1 (MQ=255)
ctctATGGCACGCGGATCTCGGGTCTGTTTTGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGAGCTGGAG‑GGGGGCGCTACCAGGCTa > 2:4724021/1‑93 (MQ=255)
tctATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTAt > 2:5972445/1‑93 (MQ=255)
tctATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTAt > 1:5927369/1‑93 (MQ=255)
ctATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTAtt > 2:527843/1‑93 (MQ=255)
tATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGT‑CGGGGGGCGCTACAAGGCCAttt > 2:2531199/1‑92 (MQ=255)
tATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTa < 2:24812/93‑1 (MQ=255)
aTGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTAc < 2:1108070/93‑1 (MQ=255)
ggCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTAcgg > 1:2585378/1‑93 (MQ=255)
gCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTAcggc < 1:1049980/93‑1 (MQ=255)
aCGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCGACAAGGCTATTAcggcgg > 1:6444988/1‑93 (MQ=255)
cgcgGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTAcggcggg > 1:1369237/1‑92 (MQ=255)
gcgGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTa < 2:2080515/93‑1 (MQ=255)
cgGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTaa > 2:4646144/1‑93 (MQ=255)
ggATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTaaa < 2:4195707/93‑1 (MQ=255)
ggATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGGaaa > 1:4052869/1‑93 (MQ=255)
ggATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACCGCGGGaaa > 2:702937/1‑93 (MQ=255)
gATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAg > 1:5467255/1‑93 (MQ=255)
gATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAg < 1:2207459/93‑1 (MQ=255)
gATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAg < 1:1534374/93‑1 (MQ=255)
aTCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGt > 2:4992218/1‑93 (MQ=255)
tctcGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTc < 2:269967/93‑1 (MQ=255)
tctcGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTc > 2:2979440/1‑93 (MQ=255)
cGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGAt < 2:6513497/93‑1 (MQ=255)
cGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGGAAAGTCGAt > 1:18237/1‑93 (MQ=255)
ggTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGAtc < 2:5861190/93‑1 (MQ=255)
ggTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGGCGAtc > 2:95987/1‑93 (MQ=255)
gTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGAtct > 2:3219029/1‑93 (MQ=255)
gTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGAtct > 2:5591815/1‑93 (MQ=255)
ttCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGAtctc < 1:6153745/93‑1 (MQ=255)
cTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTg < 1:280184/93‑1 (MQ=255)
tGTTTGCCCTGATGCTGCCTCTCTGTTCCAGCGTCGTGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTCCGGCGGTAAAGTCGATCTCTgg < 2:1840607/93‑1 (MQ=255)
gTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTggg < 1:883443/93‑1 (MQ=255)
gTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTggg < 1:5214532/93‑1 (MQ=255)
tttGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTgggg > 2:3976179/1‑93 (MQ=255)
ttGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGa > 2:6392321/1‑93 (MQ=255)
ttGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGa < 1:5079466/93‑1 (MQ=255)
gCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACaa < 2:6224948/93‑1 (MQ=255)
ccTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAAc < 1:1569176/93‑1 (MQ=255)
ccTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGGGGCGCTACAAGGCTATTACGGCCGTAAAGGCGATATCTGGGGCCaagg > 1:276220/1‑91 (MQ=255)
tGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTCAAGTCGATCTCTGGGGACAACGc > 1:3129641/1‑93 (MQ=255)
tGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGc > 2:6272296/1‑93 (MQ=255)
cTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTAt > 2:5102052/1‑93 (MQ=255)
tGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGGAAAGTCGATCTCTGGGGACAACGCTTTAtt > 2:169235/1‑93 (MQ=255)
gACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGa > 1:858775/1‑93 (MQ=255)
aCTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGCCAACGCTTTATTGa > 1:2647999/1‑93 (MQ=255)
aCTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGa > 1:5614829/1‑93 (MQ=255)
tctctGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAg < 2:2914246/93‑1 (MQ=255)
tctGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGGGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGGTTTATTGAAGTa > 1:1474456/1‑93 (MQ=255)
tctGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTa > 2:1088005/1‑93 (MQ=255)
tctGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTa > 1:527576/1‑93 (MQ=255)
ctGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTag > 1:6459791/1‑92 (MQ=255)
ctGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTAt < 1:1988739/93‑1 (MQ=255)
ctGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTAt > 2:6545361/1‑93 (MQ=255)
tGTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATg < 1:4771983/93‑1 (MQ=255)
tGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATgg < 1:4920787/93‑1 (MQ=255)
gTTCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATgg > 1:3787451/1‑93 (MQ=255)
ttCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACTCTTTATTGAAGTATGGt < 1:4376640/93‑1 (MQ=255)
ttCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGt < 2:2032889/93‑1 (MQ=255)
ttCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGt < 2:3391901/93‑1 (MQ=255)
tCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGGCAACGCTTTATTGAAGTATGGTc > 2:2379474/1‑93 (MQ=255)
tCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTc < 2:3135809/93‑1 (MQ=255)
tCCAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTc < 1:674203/93‑1 (MQ=255)
cAGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGGATGGTccg > 1:4992336/1‑91 (MQ=255)
aGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCggg > 2:2773507/1‑93 (MQ=255)
aGCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCggg < 2:4799010/93‑1 (MQ=255)
aGCGTGATGGGCGTGCTGG‑C‑GGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGGCAACGCTTTATTTAAGTATGGTCgggg > 2:1457283/1‑93 (MQ=255)
gCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCgggg > 2:4547167/1‑93 (MQ=255)
gCGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCgggg < 1:206780/93‑1 (MQ=255)
cGTGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGa < 2:4751951/93‑1 (MQ=255)
tGATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATg < 1:3833589/93‑1 (MQ=255)
gATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGc < 2:156507/93‑1 (MQ=255)
gATGGGCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGc > 1:3091013/1‑93 (MQ=255)
gggCGTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGa < 2:1069365/93‑1 (MQ=255)
gTGCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGGAGTATGGTCGGGGGTGCCGACGCt > 2:6132058/1‑93 (MQ=255)
gctgg‑ctgGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGt < 2:3622879/93‑1 (MQ=255)
gCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGt < 1:1020459/93‑1 (MQ=255)
gCTGG‑CGGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGt < 1:3545796/93‑1 (MQ=255)
tGG‑C‑GGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGtttt < 2:3536909/93‑1 (MQ=255)
c‑GGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGa > 1:4129755/1‑93 (MQ=255)
|
CGATGTGCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGA > NC_000913/2273682‑2273866
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTT > NC_000913/2273686‑2273872
|
GTGCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GG < SRR4302547.2173069/94‑1 (MQ=60)
GTGCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GG < SRR4302547.4687979/94‑1 (MQ=60)
TGCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGG > SRR4302547.130036/1‑94 (MQ=60)
TGCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGG > SRR4302547.3607190/1‑94 (MQ=60)
TGCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGG > SRR4302547.4315599/1‑94 (MQ=60)
GCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGgc < SRR4302547.639980/94‑3 (MQ=60)
GCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGGG > SRR4302547.6440810/1‑94 (MQ=60)
GCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTA > SRR4302547.2413124/1‑94 (MQ=60)
ACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACA < SRR4302547.6239041/94‑1 (MQ=60)
GCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAG < SRR4302547.917107/94‑1 (MQ=60)
CATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGG > SRR4302547.6192270/1‑94 (MQ=60)
CATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGG < SRR4302547.3014017/94‑1 (MQ=60)
CATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGC > SRR4302547.5691178/1‑94 (MQ=60)
ATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGCT < SRR4302547.1678017/94‑1 (MQ=60)
ATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGCT < SRR4302547.1739454/94‑1 (MQ=60)
TTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCT < SRR4302547.1266895/94‑1 (MQ=60)
TTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCT < SRR4302547.5592138/94‑1 (MQ=60)
TCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTA < SRR4302547.88952/94‑1 (MQ=60)
CTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTAT > SRR4302547.6050247/1‑94 (MQ=60)
CTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTAT > SRR4302547.5930312/1‑94 (MQ=60)
TCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGGGCTACAAGGCTATT > SRR4302547.3114984/1‑94 (MQ=60)
CTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTA < SRR4302547.5251656/94‑1 (MQ=60)
TATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTAC > SRR4302547.2534867/1‑94 (MQ=60)
TGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGG > SRR4302547.4596714/1‑94 (MQ=60)
TGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGG > SRR4302547.2637545/1‑94 (MQ=60)
TGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGCTATTACGGC > SRR4302547.2153460/1‑94 (MQ=60)
GCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCG < SRR4302547.6243733/94‑1 (MQ=60)
GCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCG < SRR4302547.113079/94‑1 (MQ=60)
GCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCG < SRR4302547.1070786/94‑1 (MQ=60)
CACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGGGG > SRR4302547.3401388/1‑94 (MQ=60)
CACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCGACAAGGCTATTACGGCGG > SRR4302547.6579281/1‑94 (MQ=60)
ACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGG > SRR4302547.1396715/1‑94 (MQ=60)
GCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAA > SRR4302547.907477/1‑94 (MQ=60)
CGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGGAAA > SRR4302547.4135178/1‑94 (MQ=60)
CGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAG < SRR4302547.6687057/94‑1 (MQ=60)
GGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAG > SRR4302547.5580202/1‑94 (MQ=60)
GATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGT < SRR4302547.2251827/94‑1 (MQ=60)
GATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGT < SRR4302547.1564912/94‑1 (MQ=60)
ATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTC < SRR4302547.5139987/94‑1 (MQ=60)
ATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTC < SRR4302547.5026948/94‑1 (MQ=60)
TCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCG < SRR4302547.2742396/94‑1 (MQ=60)
CTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGA > SRR4302547.435681/1‑94 (MQ=60)
CTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGA > SRR4302547.6394530/1‑94 (MQ=60)
TCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGGAAAGTCGAT > SRR4302547.18590/1‑94 (MQ=60)
CGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCT < SRR4302547.1429905/94‑1 (MQ=60)
GGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCT < SRR4302547.1469380/94‑1 (MQ=60)
TTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCT < SRR4302547.6281426/94‑1 (MQ=60)
CTGTTTGTCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGG < SRR4302547.540434/94‑1 (MQ=60)
CTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGG < SRR4302547.285402/94‑1 (MQ=60)
GTTTGTCCTGATGCTGGCTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGG < SRR4302547.739417/94‑1 (MQ=60)
GTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGG < SRR4302547.5321869/94‑1 (MQ=60)
GTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGG < SRR4302547.969382/94‑1 (MQ=60)
GTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGG < SRR4302547.900422/94‑1 (MQ=60)
TTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTGCATCTCTGGGGC > SRR4302547.2698714/1‑94 (MQ=60)
TTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGAC < SRR4302547.5184248/94‑1 (MQ=60)
TTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGAC < SRR4302547.5801821/94‑1 (MQ=60)
GGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAA < SRR4302547.3153731/94‑1 (MQ=60)
GGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAA < SRR4302547.3010084/94‑1 (MQ=60)
GCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGGTG‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAAC < SRR4302547.2192545/94‑1 (MQ=60)
GCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGCTATTACGGCCGTAAAGGCGATATCTGGGGCCAAGG > SRR4302547.281376/1‑94 (MQ=60)
CCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACG < SRR4302547.1600426/94‑1 (MQ=60)
CCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACG < SRR4302547.657349/94‑1 (MQ=60)
CTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTCAAGTCGATCTCTGGGGACAACGC > SRR4302547.3191747/1‑94 (MQ=60)
ATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTT < SRR4302547.5373753/94‑1 (MQ=60)
TGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTG < SRR4302547.4291718/94‑1 (MQ=60)
TGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTG < SRR4302547.727810/94‑1 (MQ=60)
TGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAAAGCTTTATTG > SRR4302547.5531783/1‑94 (MQ=60)
TGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGA > SRR4302547.875181/1‑94 (MQ=60)
GACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGCCAACGCTTTATTGA > SRR4302547.2701261/1‑94 (MQ=60)
GACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGA > SRR4302547.5730700/1‑94 (MQ=60)
ACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAA > SRR4302547.3610064/1‑94 (MQ=60)
TCTGTGTTCCAGTGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGT < SRR4302547.2030278/94‑1 (MQ=60)
TCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTA < SRR4302547.2948206/94‑1 (MQ=60)
CTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGGGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGGTTTATTGAAGTA > SRR4302547.1503911/1‑94 (MQ=60)
CTCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTA > SRR4302547.537113/1‑94 (MQ=60)
TCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTAT < SRR4302547.4808901/94‑1 (MQ=60)
TCTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTAG > SRR4302547.6594321/1‑94 (MQ=60)
TCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATG > SRR4302547.1551398/1‑94 (MQ=60)
CTGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATG < SRR4302547.2028230/94‑1 (MQ=60)
TGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGG < SRR4302547.4870844/94‑1 (MQ=60)
TGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGG < SRR4302547.3865686/94‑1 (MQ=60)
TGTTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGG > SRR4302547.3864670/1‑94 (MQ=60)
TGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGT < SRR4302547.4203411/94‑1 (MQ=60)
TGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGT < SRR4302547.5022701/94‑1 (MQ=60)
TTCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACTCTTTATTGAAGTATGGTC < SRR4302547.4466583/94‑1 (MQ=60)
TCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCG > SRR4302547.1823768/1‑94 (MQ=60)
TCCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCG < SRR4302547.686612/94‑1 (MQ=60)
CCAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGGATGGTCCG > SRR4302547.5095529/1‑94 (MQ=60)
CAGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGG > SRR4302547.1997093/1‑94 (MQ=60)
AGCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGG > SRR4302547.1048490/1‑94 (MQ=60)
GCGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGA < SRR4302547.210666/94‑1 (MQ=60)
CGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAATTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGAT < SRR4302547.3510419/94‑1 (MQ=60)
CGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGAT > SRR4302547.4965329/1‑94 (MQ=60)
CGTGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGAT < SRR4302547.1630164/94‑1 (MQ=60)
TGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGC < SRR4302547.3911674/94‑1 (MQ=60)
TGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGC > SRR4302547.3152311/1‑94 (MQ=60)
TGATGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGC > SRR4302547.4510727/1‑94 (MQ=60)
ATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGGCAACGCTTTATTGAAGTATGGTCGGGGATGCCGA > SRR4302547.5591894/1‑94 (MQ=60)
TGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGC > SRR4302547.1014716/1‑94 (MQ=60)
TGGGCGTGCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGA < SRR4302547.3879881/94‑1 (MQ=60)
TGCTGG‑C‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTT > SRR4302547.5174113/1‑94 (MQ=60)
GCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTT < SRR4302547.1040466/94‑1 (MQ=60)
GCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTT < SRR4302547.4805566/94‑1 (MQ=60)
GCTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTT < SRR4302547.3618157/94‑1 (MQ=60)
CTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTT > SRR4302547.5379033/1‑94 (MQ=60)
CTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTT > SRR4302547.4411741/1‑94 (MQ=60)
CTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTT < SRR4302547.2846501/94‑1 (MQ=60)
CTGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTT < SRR4302547.4258036/94‑1 (MQ=60)
TGG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTT < SRR4302547.2913631/94‑1 (MQ=60)
GG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTT < SRR4302547.3326181/94‑1 (MQ=60)
GG‑CGGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTT < SRR4302547.3492949/94‑1 (MQ=60)
G‑C‑GGGTGGCGCTACAAGGCTGTTACGGCGGTAATGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTG < SRR4302547.308379/94‑1 (MQ=60)
G‑C‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGA > SRR4302547.4213761/1‑94 (MQ=60)
cgGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGT > SRR4302547.4068203/3‑94 (MQ=60)
cgGGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGA > SRR4302547.2100922/3‑94 (MQ=60)
G‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGGCGACGGTGTTTTTGAT > SRR4302547.5709277/1‑94 (MQ=60)
G‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGAT < SRR4302547.279135/94‑1 (MQ=60)
G‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGAT < SRR4302547.474359/94‑1 (MQ=60)
G‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGAT > SRR4302547.4072285/1‑94 (MQ=60)
G‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTAT < SRR4302547.204906/94‑1 (MQ=60)
G‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTAT < SRR4302547.49012/94‑1 (MQ=60)
GCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTT < SRR4302547.4621894/94‑1 (MQ=60)
GCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTT < SRR4302547.6203287/94‑1 (MQ=60)
GCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTT < SRR4302547.6064310/94‑1 (MQ=60)
|
GTGCTGGCACGCATTCTCTATGGCACGCGGATCTCGGTTCTGTTTGGCCTGATGCTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGG‑C‑GGG‑GGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTT > NC_000913/2273686‑2273872
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
