Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,764,178 G→A L80L (CTG→CTA)  yfjN → putative cell division protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,764,1780GA100.0% 886.2 / NA 227L80L (CTG→CTA) yfjNputative cell division protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (120/107);  total (120/107)

Only 100 of 230 total aligned reads displayed.

ACCAGGGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTGGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGAC  >  NC_000913/2764088‑2764267
                                                                                          |                                                                                         
accagGGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTagg                                                                                         >  2:250304/1‑93 (MQ=255)
   agGGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCa                                                                                      >  1:3023149/1‑93 (MQ=255)
      gattAACTTGGCACCTGTGGACATTTTTTATAACGGGGACGGTTCGACTAAAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAaga                                                                                   <  1:4182184/91‑1 (MQ=255)
        ttAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGt                                                                                 >  1:4697216/1‑93 (MQ=255)
        ttAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGt                                                                                 <  2:2010099/93‑1 (MQ=255)
          aaCTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTa                                                                               <  1:3698524/93‑1 (MQ=255)
           aCTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAg                                                                              <  1:2312952/93‑1 (MQ=255)
           aCTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAg                                                                              >  1:6583100/1‑93 (MQ=255)
            cTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGc                                                                             <  1:5992669/93‑1 (MQ=255)
             ttGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCg                                                                            >  1:4944613/1‑93 (MQ=255)
                  agcTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCGCTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGatca                                                                       <  1:2750914/91‑1 (MQ=255)
                  aaCTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGatca                                                                       >  1:4459817/1‑93 (MQ=255)
                   aCTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGatcat                                                                      >  1:4513041/1‑93 (MQ=255)
                   aCTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGatcat                                                                      >  1:1548348/1‑93 (MQ=255)
                    cTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGatcatc                                                                     <  1:3307992/93‑1 (MQ=255)
                    cTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGatcatc                                                                     >  2:2780145/1‑93 (MQ=255)
                    cTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGatcatc                                                                     >  1:4684351/1‑93 (MQ=255)
                    cTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGatcatc                                                                     >  1:3622451/1‑93 (MQ=255)
                     tgtgGACATTTTTGATAACGGGGACGGTTCGCCTACAATTCAATATCTCTCTGGAGCCAATCGTTCTCTAGGCCAACAGTTAGCGGATCATCt                                                                    <  1:670661/93‑1 (MQ=255)
                      gtgGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCtt                                                                   <  2:2902905/93‑1 (MQ=255)
                       tgGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCttt                                                                  <  1:5826062/93‑1 (MQ=255)
                       tgGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCttt                                                                  >  1:110668/1‑93 (MQ=255)
                        ggACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCtttt                                                                 <  2:144940/93‑1 (MQ=255)
                         gACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCATTCTCTAGGCCAAGAGTTAGCGGATCATCttttt                                                                >  1:3332988/1‑93 (MQ=255)
                           cATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGa                                                              <  1:3269553/93‑1 (MQ=255)
                               ttttATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAAcc                                                          <  2:3711753/93‑1 (MQ=255)
                                tttATAACGGGGACGGTTCGACTACGATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCa                                                         <  2:6419241/93‑1 (MQ=255)
                                tttATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCa                                                         >  2:1875617/1‑93 (MQ=255)
                                tttATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCa                                                         <  2:323300/93‑1 (MQ=255)
                                  tataACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATc                                                       <  1:1183528/93‑1 (MQ=255)
                                  tataACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATc                                                       <  2:518506/93‑1 (MQ=255)
                                      aCGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATc                                                   >  1:6246178/1‑93 (MQ=255)
                                      aCGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATc                                                   <  2:2318567/93‑1 (MQ=255)
                                       cGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATcc                                                  <  1:6303554/93‑1 (MQ=255)
                                          ggACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCctgc                                               <  1:5195772/93‑1 (MQ=255)
                                           gACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCctgct                                              <  1:4277442/93‑1 (MQ=255)
                                            aCGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCctgctg                                             >  2:6309487/1‑93 (MQ=255)
                                            aCGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCctgctg                                             >  2:4227412/1‑93 (MQ=255)
                                               gTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAAt                                          >  2:464833/1‑93 (MQ=255)
                                               gTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAAt                                          >  1:5400802/1‑93 (MQ=255)
                                               gTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAAt                                          >  2:5407580/1‑93 (MQ=255)
                                               gTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAAt                                          >  2:2123714/1‑93 (MQ=255)
                                                 tCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAAttt                                        >  1:2233658/1‑93 (MQ=255)
                                                 tCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAAttt                                        <  1:711613/93‑1 (MQ=255)
                                                   gACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGa                                      >  1:5900178/1‑93 (MQ=255)
                                                   gACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGa                                      <  1:1149088/93‑1 (MQ=255)
                                                    aCTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAg                                     >  2:334178/1‑93 (MQ=255)
                                                    aCTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAg                                     >  1:5718433/1‑93 (MQ=255)
                                                    aCTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAg                                     >  1:4719882/1‑93 (MQ=255)
                                                    aCTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAg                                     >  1:2578649/1‑93 (MQ=255)
                                                    aCTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAg                                     >  2:3688138/1‑93 (MQ=255)
                                                      tACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCa                                   >  2:5911549/1‑93 (MQ=255)
                                                      tACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCa                                   >  2:3802122/1‑93 (MQ=255)
                                                       aCAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAg                                  <  2:3931686/93‑1 (MQ=255)
                                                        cAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAgg                                 <  1:3879245/93‑1 (MQ=255)
                                                         aaTTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGt                                >  1:136276/1‑93 (MQ=255)
                                                            tCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTaaa                             <  1:5499590/93‑1 (MQ=255)
                                                            tCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTaaa                             <  1:2594102/93‑1 (MQ=255)
                                                             cAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAat                            <  2:5290487/93‑1 (MQ=255)
                                                              aaTATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAata                           <  1:2960896/93‑1 (MQ=255)
                                                               atatCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAatat                          >  2:3475933/1‑93 (MQ=255)
                                                                tatCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATg                         <  1:4034686/93‑1 (MQ=255)
                                                                 atCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATgg                        <  2:475873/93‑1 (MQ=255)
                                                                  tctcACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGt                       >  2:5781084/1‑93 (MQ=255)
                                                                  tctcACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGt                       >  2:5763570/1‑93 (MQ=255)
                                                                   ctcACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTa                      >  2:1245969/1‑93 (MQ=255)
                                                                   ctcACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTa                      <  2:1075047/93‑1 (MQ=255)
                                                                   ctcACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTa                      <  1:492355/93‑1 (MQ=255)
                                                                    tcACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTAc                     <  1:3396741/93‑1 (MQ=255)
                                                                     cACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACt                    >  1:6151170/1‑93 (MQ=255)
                                                                      aCTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTg                   >  1:866431/1‑93 (MQ=255)
                                                                      aCTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTg                   >  1:1925577/1‑93 (MQ=255)
                                                                      aCTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTg                   >  1:3012454/1‑93 (MQ=255)
                                                                      aCTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTg                   >  1:101121/1‑93 (MQ=255)
                                                                        tGGAGCCAATCGTGCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCa                 <  2:5130506/93‑1 (MQ=255)
                                                                         ggAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCaa                >  2:4158067/1‑93 (MQ=255)
                                                                         ggAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCaa                <  1:104340/93‑1 (MQ=255)
                                                                         ggAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCaa                >  2:2591934/1‑93 (MQ=255)
                                                                         ggAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCaa                >  1:1848410/1‑93 (MQ=255)
                                                                           aGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAgg              >  1:4591392/1‑93 (MQ=255)
                                                                             ccAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGAt            >  2:4032040/1‑93 (MQ=255)
                                                                              cAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGAtt           >  1:4482478/1‑93 (MQ=255)
                                                                              cAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGAtt           <  2:3028422/93‑1 (MQ=255)
                                                                               aaTCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGAttt          >  1:5022380/1‑93 (MQ=255)
                                                                               aaTCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGAttt          >  2:6621116/1‑93 (MQ=255)
                                                                               aaTCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGAttt          >  1:1878569/1‑93 (MQ=255)
                                                                               aaTCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGAttt          >  2:4518098/1‑93 (MQ=255)
                                                                                aTCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTg         <  2:4365944/93‑1 (MQ=255)
                                                                                aTCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTg         <  2:1440056/93‑1 (MQ=255)
                                                                                aTCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTg         >  1:2835596/1‑93 (MQ=255)
                                                                                 tCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGt        >  1:1671455/1‑93 (MQ=255)
                                                                                  cGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTa       <  1:3474398/93‑1 (MQ=255)
                                                                                  cGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTa       <  1:2536149/93‑1 (MQ=255)
                                                                                   gTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTag      <  1:1458333/93‑1 (MQ=255)
                                                                                   gTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTag      <  1:1247180/93‑1 (MQ=255)
                                                                                    ttCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTaga     <  2:1552335/93‑1 (MQ=255)
                                                                                    ttCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTaga     <  1:6468064/93‑1 (MQ=255)
                                                                                     tctcTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTagag    >  1:3413934/1‑93 (MQ=255)
                                                                                     tctcTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTagag    >  2:1039300/1‑93 (MQ=255)
                                                                                       tctAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGAc  <  1:2125866/93‑1 (MQ=255)
                                                                                          |                                                                                         
ACCAGGGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTGGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGAC  >  NC_000913/2764088‑2764267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGACCAGGGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTGGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGC  >  NC_000913/2764085‑2764271
                                                                                             |                                                                                             
CAGACCAGGGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCATTGGAGCCAATCGTTCTCTA                                                                                               >  SRR4302547.1032948/1‑94 (MQ=60)
 AGACCAGGGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAG                                                                                              <  SRR4302547.5752451/94‑1 (MQ=60)
   ACCAGGGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGC                                                                                            >  SRR4302547.3402134/1‑94 (MQ=60)
    CCAGGGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCC                                                                                           >  SRR4302547.1439688/1‑94 (MQ=60)
    CCAGGGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCC                                                                                           >  SRR4302547.6411365/1‑94 (MQ=60)
     CAGGGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCA                                                                                          >  SRR4302547.3083264/1‑94 (MQ=60)
      AGGGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAA                                                                                         <  SRR4302547.4738876/94‑1 (MQ=60)
      AGGGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAA                                                                                         >  SRR4302547.4600905/1‑94 (MQ=60)
        GGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGA                                                                                       <  SRR4302547.3395042/94‑1 (MQ=60)
         GATTAACTTGGCACCTGTGGACATTTTTTATAACGGGGACGGTTCGACTAAAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAG                                                                                      <  SRR4302547.4267414/94‑1 (MQ=60)
          GTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGT                                                                                     <  SRR4302547.3810924/94‑1 (MQ=60)
          GTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGT                                                                                     >  SRR4302547.4794511/1‑94 (MQ=60)
           TTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTT                                                                                    <  SRR4302547.3569803/94‑1 (MQ=60)
           TTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAAGCCAAGAGTT                                                                                    >  SRR4302547.1775217/1‑94 (MQ=60)
            TAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTA                                                                                   <  SRR4302547.1377849/94‑1 (MQ=60)
            TAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTA                                                                                   >  SRR4302547.1089717/1‑94 (MQ=60)
             AACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAG                                                                                  <  SRR4302547.3774013/94‑1 (MQ=60)
             AACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAG                                                                                  >  SRR4302547.6720178/1‑94 (MQ=60)
              ACTTGTCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGC                                                                                 <  SRR4302547.850102/94‑1 (MQ=60)
              ACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGC                                                                                 >  SRR4302547.6716525/1‑94 (MQ=60)
              ACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGC                                                                                 <  SRR4302547.2359845/94‑1 (MQ=60)
              ACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGC                                                                                 <  SRR4302547.6279738/94‑1 (MQ=60)
              ACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGC                                                                                 >  SRR4302547.6507905/1‑94 (MQ=60)
               CTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCG                                                                                <  SRR4302547.3208054/94‑1 (MQ=60)
               CTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCG                                                                                >  SRR4302547.5047013/1‑94 (MQ=60)
               CTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCG                                                                                <  SRR4302547.6117008/94‑1 (MQ=60)
               CTTGCCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCG                                                                                <  SRR4302547.34528/94‑1 (MQ=60)
                TTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGG                                                                               >  SRR4302547.2711512/1‑94 (MQ=60)
                TTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGG                                                                               <  SRR4302547.4123242/94‑1 (MQ=60)
                  GGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGAT                                                                             <  SRR4302547.1936753/94‑1 (MQ=60)
                  GGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGAT                                                                             >  SRR4302547.288302/1‑94 (MQ=60)
                    CAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCA                                                                           >  SRR4302547.4551997/1‑94 (MQ=60)
                    CAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCA                                                                           >  SRR4302547.6233982/1‑94 (MQ=60)
                    CAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCA                                                                           >  SRR4302547.118046/1‑94 (MQ=60)
                     AGCTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCGCTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCAT                                                                          <  SRR4302547.2806076/94‑1 (MQ=60)
                     AACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCAT                                                                          >  SRR4302547.4606284/1‑94 (MQ=60)
                     AACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCAT                                                                          >  SRR4302547.786500/1‑94 (MQ=60)
                     AACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCAT                                                                          >  SRR4302547.1579175/1‑94 (MQ=60)
                     AACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCAT                                                                          <  SRR4302547.2359791/94‑1 (MQ=60)
                      ACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATC                                                                         >  SRR4302547.3696345/1‑94 (MQ=60)
                      ACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATC                                                                         >  SRR4302547.4781381/1‑94 (MQ=60)
                       CTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCT                                                                        <  SRR4302547.3374687/94‑1 (MQ=60)
                       CTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCT                                                                        >  SRR4302547.2989639/1‑94 (MQ=60)
                        TGTGGACATTTTTGATAACGGGGACGGTTCGCCTACAATTCAATATCTCTCTGGAGCCAATCGTTCTCTAGGCCAACAGTTAGCGGATCATCTT                                                                       <  SRR4302547.683002/94‑1 (MQ=60)
                         GTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTT                                                                      >  SRR4302547.112687/1‑94 (MQ=60)
                          TGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTT                                                                     <  SRR4302547.5946632/94‑1 (MQ=60)
                          TGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTT                                                                     <  SRR4302547.5046018/94‑1 (MQ=60)
                           GGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTT                                                                    <  SRR4302547.5484701/94‑1 (MQ=60)
                           GGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCATTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTT                                                                    >  SRR4302547.3400394/1‑94 (MQ=60)
                            GACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTG                                                                   <  SRR4302547.2259026/94‑1 (MQ=60)
                              CATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAA                                                                 <  SRR4302547.3334992/94‑1 (MQ=60)
                                TTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAAC                                                               >  SRR4302547.2183945/1‑94 (MQ=60)
                                TTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAAC                                                               <  SRR4302547.14605/94‑1 (MQ=60)
                                 TTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACC                                                              <  SRR4302547.3684454/94‑1 (MQ=60)
                                   TTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCAT                                                            <  SRR4302547.6102855/94‑1 (MQ=60)
                                     TATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCA                                                          <  SRR4302547.1207432/94‑1 (MQ=60)
                                     TATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCA                                                          <  SRR4302547.5944203/94‑1 (MQ=60)
                                      ATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAA                                                         >  SRR4302547.2616605/1‑94 (MQ=60)
                                       TAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAAT                                                        >  SRR4302547.4382165/1‑94 (MQ=60)
                                       TAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAAT                                                        <  SRR4302547.252939/94‑1 (MQ=60)
                                        AACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATC                                                       >  SRR4302547.6375926/1‑94 (MQ=60)
                                          CGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCT                                                     <  SRR4302547.6298458/94‑1 (MQ=60)
                                          CGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCT                                                     <  SRR4302547.6434592/94‑1 (MQ=60)
                                          CGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCT                                                     <  SRR4302547.4746801/94‑1 (MQ=60)
                                           GGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTG                                                    >  SRR4302547.6732307/1‑94 (MQ=60)
                                           GGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTG                                                    >  SRR4302547.3468096/1‑94 (MQ=60)
                                             GGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCT                                                  <  SRR4302547.5302702/94‑1 (MQ=60)
                                             GGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCT                                                  >  SRR4302547.1544837/1‑94 (MQ=60)
                                              GACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTG                                                 <  SRR4302547.5172329/94‑1 (MQ=60)
                                              GACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTG                                                 <  SRR4302547.4365289/94‑1 (MQ=60)
                                              GACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTG                                                 >  SRR4302547.3050018/1‑94 (MQ=60)
                                               ACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGA                                                <  SRR4302547.3096086/94‑1 (MQ=60)
                                               ACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGA                                                <  SRR4302547.2621196/94‑1 (MQ=60)
                                                 GGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAAT                                              >  SRR4302547.5512425/1‑94 (MQ=60)
                                                 GGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAAT                                              <  SRR4302547.6007846/94‑1 (MQ=60)
                                                 GGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAAT                                              >  SRR4302547.1164663/1‑94 (MQ=60)
                                                  GTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATT                                             >  SRR4302547.2641784/1‑94 (MQ=60)
                                                   TTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTT                                            >  SRR4302547.2278681/1‑94 (MQ=60)
                                                    TCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTG                                           <  SRR4302547.724773/94‑1 (MQ=60)
                                                     CGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGA                                          >  SRR4302547.6022360/1‑94 (MQ=60)
                                                     CGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGA                                          >  SRR4302547.942399/1‑94 (MQ=60)
                                                      GACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAG                                         >  SRR4302547.4817615/1‑94 (MQ=60)
                                                      GACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAG                                         >  SRR4302547.5836551/1‑94 (MQ=60)
                                                      GACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAG                                         <  SRR4302547.1172322/94‑1 (MQ=60)
                                                      GACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAG                                         >  SRR4302547.1880054/1‑94 (MQ=60)
                                                      GACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAG                                         >  SRR4302547.2630686/1‑94 (MQ=60)
                                                       ACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGC                                        <  SRR4302547.1269085/94‑1 (MQ=60)
                                                       ACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGC                                        >  SRR4302547.550324/1‑94 (MQ=60)
                                                           CAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGT                                    >  SRR4302547.138734/1‑94 (MQ=60)
                                                           CAATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGT                                    <  SRR4302547.3958178/94‑1 (MQ=60)
                                                            AATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTA                                   <  SRR4302547.5894164/94‑1 (MQ=60)
                                                            AATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTAGAAACCATCAATCCTGCTGAATTTGAGCAGGTA                                   <  SRR4302547.45636/94‑1 (MQ=60)
                                                             ATTCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAA                                  <  SRR4302547.5728853/94‑1 (MQ=60)
                                                               TCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAAT                                <  SRR4302547.5613138/94‑1 (MQ=60)
                                                               TCAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAAA                                <  SRR4302547.2646415/94‑1 (MQ=60)
                                                                CAATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATA                               <  SRR4302547.3716956/94‑1 (MQ=60)
                                                                CAATATCTAACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATA                               >  SRR4302547.5478986/1‑94 (MQ=60)
                                                                 AATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATAT                              <  SRR4302547.3019830/94‑1 (MQ=60)
                                                                 AATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATAT                              <  SRR4302547.4337768/94‑1 (MQ=60)
                                                                 AATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATAT                              >  SRR4302547.6610533/1‑94 (MQ=60)
                                                                  ATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATG                             >  SRR4302547.4662894/1‑94 (MQ=60)
                                                                  ATATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATG                             >  SRR4302547.4559474/1‑94 (MQ=60)
                                                                   TATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGG                            <  SRR4302547.4116606/94‑1 (MQ=60)
                                                                    ATCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGT                           <  SRR4302547.1063235/94‑1 (MQ=60)
                                                                     TCTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTA                          <  SRR4302547.710413/94‑1 (MQ=60)
                                                                      CTCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTAC                         <  SRR4302547.501343/94‑1 (MQ=60)
                                                                       TCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACT                        >  SRR4302547.6278797/1‑94 (MQ=60)
                                                                       TCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACT                        <  SRR4302547.3465856/94‑1 (MQ=60)
                                                                       TCACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACT                        <  SRR4302547.2862404/94‑1 (MQ=60)
                                                                        CACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTG                       >  SRR4302547.3072342/1‑94 (MQ=60)
                                                                        CACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTG                       >  SRR4302547.102983/1‑94 (MQ=60)
                                                                        CACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTG                       >  SRR4302547.1963724/1‑94 (MQ=60)
                                                                        CACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTG                       >  SRR4302547.883007/1‑94 (MQ=60)
                                                                         ACTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGC                      >  SRR4302547.3077541/1‑94 (MQ=60)
                                                                          CTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCA                     <  SRR4302547.4808188/94‑1 (MQ=60)
                                                                          CTGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCA                     >  SRR4302547.2087818/1‑94 (MQ=60)
                                                                           TGGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAA                    >  SRR4302547.1884951/1‑94 (MQ=60)
                                                                            GGAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAG                   <  SRR4302547.106244/94‑1 (MQ=60)
                                                                             GAGCCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGG                  >  SRR4302547.4686406/1‑94 (MQ=60)
                                                                                CCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATTTTTTTAAAACCATCAATCTTGCTGAATTTAGGCAGGTAAATATGGTCCTCCAGGGATT               >  SRR4302547.188111/1‑94 (MQ=60)
                                                                                CCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATT               >  SRR4302547.4233238/1‑94 (MQ=60)
                                                                                CCAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATT               >  SRR4302547.4575082/1‑94 (MQ=60)
                                                                                 CAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTT              >  SRR4302547.1915679/1‑94 (MQ=60)
                                                                                 CAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTT              >  SRR4302547.5126156/1‑94 (MQ=60)
                                                                                 CAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTT              >  SRR4302547.1184577/1‑94 (MQ=60)
                                                                                 CAATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTT              >  SRR4302547.5039159/1‑94 (MQ=60)
                                                                                  AATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTG             >  SRR4302547.4787259/1‑94 (MQ=60)
                                                                                  AATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTG             >  SRR4302547.2892286/1‑94 (MQ=60)
                                                                                   ATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGT            >  SRR4302547.1704381/1‑94 (MQ=60)
                                                                                   ATCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGT            >  SRR4302547.4826424/1‑94 (MQ=60)
                                                                                    TCGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTA           >  SRR4302547.4111750/1‑94 (MQ=60)
                                                                                     CGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAG          <  SRR4302547.3545262/94‑1 (MQ=60)
                                                                                     CGTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAG          <  SRR4302547.2587395/94‑1 (MQ=60)
                                                                                      GTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGA         >  SRR4302547.189957/1‑94 (MQ=60)
                                                                                      GTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGA         <  SRR4302547.1272352/94‑1 (MQ=60)
                                                                                      GTTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGA         <  SRR4302547.1487473/94‑1 (MQ=60)
                                                                                       TTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAG        <  SRR4302547.3486276/94‑1 (MQ=60)
                                                                                       TTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAG        <  SRR4302547.6602765/94‑1 (MQ=60)
                                                                                       TTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAG        >  SRR4302547.3361496/1‑94 (MQ=60)
                                                                                       TTCTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAG        >  SRR4302547.3483453/1‑94 (MQ=60)
                                                                                         CTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGAC      >  SRR4302547.5098051/1‑94 (MQ=60)
                                                                                         CTCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGAC      >  SRR4302547.1596070/1‑94 (MQ=60)
                                                                                          TCTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACA     <  SRR4302547.2168230/94‑1 (MQ=60)
                                                                                           CTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAA    >  SRR4302547.2102073/1‑94 (MQ=60)
                                                                                           CTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAA    >  SRR4302547.353834/1‑94 (MQ=60)
                                                                                           CTAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAA    <  SRR4302547.5540851/94‑1 (MQ=60)
                                                                                            TAGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAG   <  SRR4302547.1958462/94‑1 (MQ=60)
                                                                                             AGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGC  <  SRR4302547.5791172/94‑1 (MQ=60)
                                                                                             |                                                                                             
CAGACCAGGGGTTAACTTGGCAACTGTGGACATTTTTTATAACGGGGACGGTTCGACTACAATTCAATATCTCACTGGAGCCAATCGTTCTCTGGGCCAAGAGTTAGCGGATCATCTTTTTGAAACCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGC  >  NC_000913/2764085‑2764271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑