Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,766,473 A→G D248G (GAT→GGT)  b2632 → putative GTP‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,766,4730AG100.0% 782.9 / NA 213D248G (GAT→GGT) b2632putative GTP‑binding protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (106/107);  total (106/107)

Only 100 of 218 total aligned reads displayed.

GCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGGACATGGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGATACCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCA  >  NC_000913/2766386‑2766561
                                                                                       |                                                                                        
  agcCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATa                                                                                   <  2:5068591/93‑1 (MQ=255)
   gcCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATAc                                                                                  >  1:5106454/1‑93 (MQ=255)
   gcCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATAc                                                                                  <  2:4582067/93‑1 (MQ=255)
   gcCCGGGAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATAc                                                                                  >  2:4392575/1‑93 (MQ=255)
     ccGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTc                                                                                >  1:463347/1‑93 (MQ=255)
      cGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCg                                                                               >  2:3455395/1‑93 (MQ=255)
       ggTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGCAACCGTAGGTGCCATACTCGa                                                                              >  2:2833763/1‑93 (MQ=255)
       ggTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGa                                                                              <  1:2466369/93‑1 (MQ=255)
        gtagtaGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGAt                                                                             >  2:1322392/1‑93 (MQ=255)
        gtagtaGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGAt                                                                             <  2:1240114/93‑1 (MQ=255)
         tagtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATa                                                                            <  2:1973265/93‑1 (MQ=255)
         tagtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATa                                                                            <  1:589069/93‑1 (MQ=255)
         tagtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATa                                                                            <  1:1229059/93‑1 (MQ=255)
          agtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATAc                                                                           <  1:2836443/93‑1 (MQ=255)
          agtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATAc                                                                           <  2:1350677/93‑1 (MQ=255)
          agtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATAc                                                                           <  1:5992325/93‑1 (MQ=255)
          agtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATAc                                                                           >  1:2781869/1‑93 (MQ=255)
           gtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACg                                                                          >  2:2363234/1‑93 (MQ=255)
            tagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACgg                                                                         >  1:5958342/1‑93 (MQ=255)
            tagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACgg                                                                         <  2:719229/93‑1 (MQ=255)
            tagCGCCACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACgg                                                                         >  2:4442766/1‑93 (MQ=255)
              gcgcTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTa                                                                       >  1:770354/1‑93 (MQ=255)
               cgcCACTGCCACATCCCTTGCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTaa                                                                      <  1:3413073/93‑1 (MQ=255)
                gcTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAg                                                                     <  1:3102580/93‑1 (MQ=255)
                 cTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGc                                                                    >  2:5972974/1‑93 (MQ=255)
                  tACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCa                                                                   >  1:418499/1‑93 (MQ=255)
                   aCTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCAc                                                                  >  2:2218277/1‑93 (MQ=255)
                   aCTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCAc                                                                  >  2:6414984/1‑93 (MQ=255)
                   aCTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCAc                                                                  >  1:2185325/1‑93 (MQ=255)
                    cTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCAcc                                                                 >  2:2077489/1‑93 (MQ=255)
                     tGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCt                                                                <  1:862675/93‑1 (MQ=255)
                     tGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCt                                                                <  2:4011187/93‑1 (MQ=255)
                     tGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCt                                                                <  2:5487743/93‑1 (MQ=255)
                      gCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCtt                                                               <  2:3412415/93‑1 (MQ=255)
                      gCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCtt                                                               <  1:2207540/93‑1 (MQ=255)
                      gCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCtt                                                               <  1:2538831/93‑1 (MQ=255)
                      gCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCtt                                                               >  1:5185912/1‑93 (MQ=255)
                      acaccATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGCCGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCtt                                                               <  1:2298006/89‑1 (MQ=255)
                        aaCATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTc                                                             >  2:5320617/1‑93 (MQ=255)
                        aaCATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTc                                                             <  2:465350/93‑1 (MQ=255)
                         aCATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTcc                                                            >  2:4721156/1‑93 (MQ=255)
                         aCATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTcc                                                            <  1:19211/93‑1 (MQ=255)
                         aCATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTcc                                                            >  1:5468147/1‑93 (MQ=255)
                          cATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTccc                                                           <  2:2201595/93‑1 (MQ=255)
                           aTCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTcccc                                                          >  1:1100030/1‑93 (MQ=255)
                           aTCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTcccc                                                          >  1:1166502/1‑93 (MQ=255)
                            tCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTccctt                                                         <  1:6549375/93‑3 (MQ=255)
                             cccTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCtt                                                        <  1:3458818/93‑1 (MQ=255)
                             cccTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCtt                                                        >  2:4332574/1‑93 (MQ=255)
                              ccTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTa                                                       <  2:3188090/93‑1 (MQ=255)
                               cTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTAt                                                      <  1:3025639/93‑1 (MQ=255)
                                tttCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGCAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTAtt                                                     >  2:3899688/1‑93 (MQ=255)
                                       caacggTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGccc                                              <  2:5751704/89‑1 (MQ=255)
                                       caacggTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGccc                                              >  2:324752/5‑93 (MQ=255)
                                       caacggTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTACCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGccc                                              >  2:1232381/5‑93 (MQ=255)
                                        atcggTAGCCCGGTAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATCCTCGATACGGTAAGCACCTTTCCCCTTATTCCCGcccc                                             <  2:4398788/90‑1 (MQ=255)
                                        aacggTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGcccc                                             <  2:5350807/90‑1 (MQ=255)
                                         acggTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCg                                            <  1:2620344/91‑1 (MQ=255)
                                         acggTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCg                                            >  1:5007437/3‑93 (MQ=255)
                                          cggTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCgg                                           <  2:5676090/92‑1 (MQ=255)
                                          cggTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCgg                                           >  2:2730566/2‑93 (MQ=255)
                                            gTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTg                                         >  2:482874/1‑93 (MQ=255)
                                            gTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTg                                         <  1:3366139/93‑1 (MQ=255)
                                             tAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGc                                        <  2:1936232/93‑1 (MQ=255)
                                              aGCCCGGGAGCAGGCACGTGACGATTTCGGTTAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCg                                       >  1:6642193/1‑93 (MQ=255)
                                                 ccGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGAc                                    <  1:4397091/93‑1 (MQ=255)
                                                  cGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGAcc                                   >  1:4957334/1‑93 (MQ=255)
                                                  cGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGAcc                                   >  2:6588097/1‑93 (MQ=255)
                                                   gggAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCa                                  <  1:5311694/93‑1 (MQ=255)
                                                   gggAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCa                                  >  1:5241077/1‑93 (MQ=255)
                                                    ggAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCat                                 >  2:1629369/1‑93 (MQ=255)
                                                    ggAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCat                                 >  2:4620269/1‑93 (MQ=255)
                                                    ggAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCat                                 >  1:3800066/1‑93 (MQ=255)
                                                       gCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCACGCCCCGGTGCGGACCattat                              >  2:1137731/1‑93 (MQ=255)
                                                        cAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCattatt                             >  2:1510386/1‑93 (MQ=255)
                                                          ggCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCa                           <  2:6549352/93‑1 (MQ=255)
                                                          ggCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCa                           >  1:3293122/1‑93 (MQ=255)
                                                           gCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAg                          <  1:1552298/93‑1 (MQ=255)
                                                            cACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAgg                         >  1:4049290/1‑93 (MQ=255)
                                                             ccGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGc                        <  2:5558919/92‑1 (MQ=255)
                                                              cGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGcc                       <  1:3537117/93‑1 (MQ=255)
                                                               gTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCg                      <  1:6246892/93‑1 (MQ=255)
                                                                    gATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGt                 >  1:1960012/1‑93 (MQ=255)
                                                                     aTTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGtt                >  2:1847197/1‑93 (MQ=255)
                                                                     aTTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGtt                >  2:4517735/1‑93 (MQ=255)
                                                                       ttCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTcc              <  2:2593255/93‑1 (MQ=255)
                                                                       ttCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTcc              <  2:1585828/93‑1 (MQ=255)
                                                                         cGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTc            >  2:634524/1‑93 (MQ=255)
                                                                           gTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCgg          <  2:3525921/93‑1 (MQ=255)
                                                                            tGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCggt         <  2:1740609/93‑1 (MQ=255)
                                                                              aaaCCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCggtgg       <  2:1454884/93‑1 (MQ=255)
                                                                               aaCCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCggtggt      >  2:5933640/1‑93 (MQ=255)
                                                                               aaCCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCggtggt      <  2:6180571/93‑1 (MQ=255)
                                                                               aaCCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCggtggt      >  2:3338803/1‑93 (MQ=255)
                                                                               aaCCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGAGGACCATTATTCAGGCCGTGCTTTCCCCggtggg      >  2:947181/1‑92 (MQ=255)
                                                                                 ccGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGgtgt    <  2:3749878/93‑1 (MQ=255)
                                                                                 ccGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGgtgt    <  1:4755979/93‑1 (MQ=255)
                                                                                 ccGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGgtgt    >  1:4688905/1‑93 (MQ=255)
                                                                                 ccGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGgtgt    >  1:367168/1‑93 (MQ=255)
                                                                                  cGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTc   <  1:6510392/93‑1 (MQ=255)
                                                                                       |                                                                                        
GCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGGACATGGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGATACCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCA  >  NC_000913/2766386‑2766561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGCCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGGACATGGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGATACCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGT  >  NC_000913/2766380‑2766563
                                                                                             |                                                                                          
AGTCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGG                                                                                            <  SRR4302547.5965288/94‑1 (MQ=60)
 GGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGT                                                                                           <  SRR4302547.5358412/94‑1 (MQ=60)
      GCAGCCCGGTAGTAGCGCTCCTGCAACATGCCTTCCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCAT                                                                                      <  SRR4302547.412080/94‑1 (MQ=60)
       CAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATA                                                                                     >  SRR4302547.3403937/1‑94 (MQ=60)
        CGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATAC                                                                                    >  SRR4302547.3507439/1‑94 (MQ=60)
        AGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATAC                                                                                    <  SRR4302547.3738483/94‑1 (MQ=60)
        AGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATAC                                                                                    >  SRR4302547.5211697/1‑94 (MQ=60)
          CCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTC                                                                                  >  SRR4302547.471903/1‑94 (MQ=60)
           CCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCG                                                                                 >  SRR4302547.5087589/1‑94 (MQ=60)
            CGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGA                                                                                <  SRR4302547.611482/94‑1 (MQ=60)
             GGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGAT                                                                               <  SRR4302547.2516218/94‑1 (MQ=60)
               TAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATAC                                                                             >  SRR4302547.2837596/1‑94 (MQ=60)
               TAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATAC                                                                             <  SRR4302547.1253853/94‑1 (MQ=60)
               TAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATAC                                                                             <  SRR4302547.599732/94‑1 (MQ=60)
                AGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAACCCGTAGGTGCCATACTCGATACG                                                                            <  SRR4302547.1990219/94‑1 (MQ=60)
                AGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACG                                                                            <  SRR4302547.4122483/94‑1 (MQ=60)
                AGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACG                                                                            <  SRR4302547.6116655/94‑1 (MQ=60)
                AGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACG                                                                            <  SRR4302547.2893149/94‑1 (MQ=60)
                 GTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGG                                                                           >  SRR4302547.6081888/1‑94 (MQ=60)
                   AGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTA                                                                         >  SRR4302547.11281/1‑94 (MQ=60)
                   AGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTA                                                                         >  SRR4302547.784910/1‑94 (MQ=60)
                     CGCTACTGCAACATCCCTTTCGTACAACGGTAGCCCGGGGGATGGCGCGTGACGATTTCGGTGAATCCGTTGGTGCCATACTCGATACGGTAAG                                                                       <  SRR4302547.6788430/94‑1 (MQ=32)
                     CGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAG                                                                       >  SRR4302547.282581/1‑94 (MQ=60)
                     CGCCACTGCCACATCCCTTGCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAG                                                                       <  SRR4302547.3482571/94‑1 (MQ=60)
                      GCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGC                                                                      >  SRR4302547.1502382/1‑94 (MQ=60)
                      GCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGC                                                                      <  SRR4302547.3164070/94‑1 (MQ=60)
                       tgACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGACACGTGACGATTTCGGTGAAACCGTAGGTGCCATGCTCGATACGGTAAGCA                                                                     <  SRR4302547.2967410/92‑1 (MQ=60)
                       CTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCA                                                                     >  SRR4302547.4793469/1‑94 (MQ=60)
                       CTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCA                                                                     >  SRR4302547.426255/1‑94 (MQ=60)
                        TACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCAC                                                                    >  SRR4302547.5156322/1‑94 (MQ=60)
                        TACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCAC                                                                    >  SRR4302547.2229136/1‑94 (MQ=60)
                        TACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCAC                                                                    >  SRR4302547.3817982/1‑94 (MQ=60)
                        TACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCAC                                                                    >  SRR4302547.6213045/1‑94 (MQ=60)
                           TGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTT                                                                 >  SRR4302547.5292643/1‑94 (MQ=60)
                           TGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTT                                                                 <  SRR4302547.879163/94‑1 (MQ=60)
                           TGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTT                                                                 <  SRR4302547.3151169/94‑1 (MQ=60)
                            acacCATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGCCGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTT                                                                <  SRR4302547.2344579/90‑1 (MQ=60)
                            GCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTT                                                                <  SRR4302547.2251913/94‑1 (MQ=60)
                            GCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTT                                                                <  SRR4302547.2590119/94‑1 (MQ=60)
                              AACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCC                                                              >  SRR4302547.5581111/1‑94 (MQ=60)
                               ACATCCCTTTCGAACAACGGTAGCCCGTGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCC                                                             <  SRR4302547.2789159/94‑1 (MQ=60)
                               ACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCC                                                             >  SRR4302547.6428873/1‑94 (MQ=60)
                               ACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCA                                                             <  SRR4302547.19582/94‑1 (MQ=60)
                                CATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCC                                                            >  SRR4302547.1122121/1‑94 (MQ=60)
                                CATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCC                                                            >  SRR4302547.1190100/1‑94 (MQ=60)
                                 ATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCT                                                           <  SRR4302547.816130/94‑1 (MQ=60)
                                  TCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCTTT                                                          <  SRR4302547.6685666/94‑1 (MQ=60)
                                  TCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTT                                                          >  SRR4302547.4505531/1‑94 (MQ=60)
                                   CCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTA                                                         <  SRR4302547.3529337/94‑1 (MQ=60)
                                    CCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTAT                                                        >  SRR4302547.4751593/1‑94 (MQ=60)
                                     CTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATT                                                       <  SRR4302547.3085803/94‑1 (MQ=60)
                                       ttcgaacaacGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCC                                                     >  SRR4302547.5374861/11‑94 (MQ=60)
                                       ttcgaacaacGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCC                                                     >  SRR4302547.2843015/11‑94 (MQ=60)
                                       ttcgaacaacGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCC                                                     >  SRR4302547.2569531/11‑94 (MQ=60)
                                        tcgaacaacGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCC                                                    <  SRR4302547.5919769/85‑1 (MQ=60)
                                          gaacaacGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGC                                                  <  SRR4302547.1615655/87‑1 (MQ=60)
                                           aacaacGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCC                                                 >  SRR4302547.292989/7‑94 (MQ=60)
                                              aacGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCG                                              >  SRR4302547.5110975/4‑94 (MQ=60)
                                               acGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGG                                             <  SRR4302547.2673134/92‑1 (MQ=60)
                                               acGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGG                                             >  SRR4302547.2048131/3‑94 (MQ=60)
                                                  GTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGC                                          <  SRR4302547.3434505/94‑1 (MQ=60)
                                                   TAGCCCGGGAGCAGGCACGTGACGATTTCGGTTAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCG                                         >  SRR4302547.6780469/1‑94 (MQ=60)
                                                    AGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGG                                        >  SRR4302547.5355906/1‑94 (MQ=60)
                                                    AGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGG                                        <  SRR4302547.4205243/94‑1 (MQ=60)
                                                      CCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGAC                                      >  SRR4302547.6727718/1‑94 (MQ=60)
                                                      CCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGAC                                      >  SRR4302547.5577094/1‑94 (MQ=60)
                                                       CCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACC                                     >  SRR4302547.5059929/1‑94 (MQ=60)
                                                       CCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACC                                     <  SRR4302547.4487630/94‑1 (MQ=60)
                                                        CGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCA                                    >  SRR4302547.5348967/1‑94 (MQ=60)
                                                         GGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCAT                                   <  SRR4302547.5421249/94‑1 (MQ=60)
                                                         GGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCAT                                   >  SRR4302547.3877529/1‑94 (MQ=60)
                                                          GGAGCAGGCACGTGACGAGTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATT                                  <  SRR4302547.1228778/94‑1 (MQ=60)
                                                           GAGGAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTA                                 >  SRR4302547.3331094/1‑94 (MQ=60)
                                                               AGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCA                             >  SRR4302547.3359289/1‑94 (MQ=60)
                                                               AGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTGATTCCCGCCCCGGTGCGGACCATTATTCA                             >  SRR4302547.6665486/1‑94 (MQ=60)
                                                                GGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAG                            <  SRR4302547.3390965/94‑1 (MQ=60)
                                                                 GCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGG                           <  SRR4302547.6070948/94‑1 (MQ=60)
                                                                 GCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGG                           <  SRR4302547.1583194/94‑1 (MQ=60)
                                                                 GCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGG                           >  SRR4302547.4131528/1‑94 (MQ=60)
                                                                  CACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGC                          >  SRR4302547.5041834/1‑94 (MQ=60)
                                                                    CGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCG                        >  SRR4302547.5769273/1‑94 (MQ=60)
                                                                    CGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCG                        <  SRR4302547.3609329/94‑1 (MQ=60)
                                                                     GTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGT                       <  SRR4302547.6376654/94‑1 (MQ=60)
                                                                     GTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGT                       >  SRR4302547.2233741/1‑94 (MQ=60)
                                                                     GTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGT                       <  SRR4302547.4738525/94‑1 (MQ=60)
                                                                      TGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTG                      <  SRR4302547.6089524/94‑1 (MQ=60)
                                                                       GACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGC                     >  SRR4302547.1610450/1‑94 (MQ=60)
                                                                         CGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGT                   >  SRR4302547.3467359/1‑94 (MQ=60)
                                                                         CGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGT                   >  SRR4302547.1998927/1‑94 (MQ=60)
                                                                          GATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTT                  >  SRR4302547.3571578/1‑94 (MQ=60)
                                                                          GATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTT                  <  SRR4302547.4809614/94‑1 (MQ=60)
                                                                           ATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTC                 <  SRR4302547.2665726/94‑1 (MQ=60)
                                                                            TTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCC                >  SRR4302547.2578054/1‑94 (MQ=60)
                                                                               CGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCG             <  SRR4302547.5293278/94‑1 (MQ=60)
                                                                                GGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGG            <  SRR4302547.5379442/94‑1 (MQ=60)
                                                                                  TGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTG          <  SRR4302547.227765/94‑1 (MQ=60)
                                                                                    AAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGT        <  SRR4302547.2222131/94‑1 (MQ=60)
                                                                                     AACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTG       >  SRR4302547.5289763/1‑94 (MQ=60)
                                                                                     AACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTG       <  SRR4302547.2455537/94‑1 (MQ=60)
                                                                                      ACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGT      >  SRR4302547.4786017/1‑94 (MQ=60)
                                                                                      ACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGT      <  SRR4302547.4467850/94‑1 (MQ=60)
                                                                                      ACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGT      >  SRR4302547.373975/1‑94 (MQ=60)
                                                                                       CCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTC     <  SRR4302547.4854525/94‑1 (MQ=60)
                                                                                        CGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCA    <  SRR4302547.6645935/94‑1 (MQ=60)
                                                                                         GTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAG   >  SRR4302547.2355339/1‑94 (MQ=60)
                                                                                         GTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAG   >  SRR4302547.6677133/1‑94 (MQ=60)
                                                                                         GTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAG   >  SRR4302547.3455461/1‑94 (MQ=60)
                                                                                         GTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAG   <  SRR4302547.2886728/94‑1 (MQ=60)
                                                                                          TAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGT  >  SRR4302547.4636758/1‑94 (MQ=60)
                                                                                          TAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGT  >  SRR4302547.4576961/1‑94 (MQ=60)
                                                                                          TAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGT  <  SRR4302547.4397889/94‑1 (MQ=60)
                                                                                          TAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGT  <  SRR4302547.6043375/94‑1 (MQ=60)
                                                                                          TAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGT  <  SRR4302547.5734200/94‑1 (MQ=60)
                                                                                             |                                                                                          
AGCCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGGACATGGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGATACCATACTCGATACGGTAAGCACCTTTCCCCTTATTCCCGCCCCGGTGCGGACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGT  >  NC_000913/2766380‑2766563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑