Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,786,585 |
G→A |
G63D (GGC→GAC) |
b2658 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,786,585 | 0 | G | A | 84.2%
| 276.0
/ 36.2
| 101 | G63D (GGC→GAC) | b2658 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (8/8); new base A (28/57); total (36/65) |
| Fisher's exact test for biased strand distribution p-value = 2.56e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.42e-01 |
Only 100 of 103 total aligned reads displayed.
ATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTAA > NC_000913/2786496‑2786675
|
ataCAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACgg < 2:829173/93‑1 (MQ=255)
taCAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGa > 1:2792497/1‑93 (MQ=255)
aCAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGaa < 2:2207508/93‑1 (MQ=255)
cAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAAc < 1:4962873/93‑1 (MQ=255)
aaaaCATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAActc < 1:3376539/93‑1 (MQ=255)
aaaCATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAActct > 1:1016758/1‑93 (MQ=255)
cATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTaaa < 2:6305761/93‑1 (MQ=255)
cATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTaaa < 2:3826563/93‑1 (MQ=255)
gggAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATc < 1:5416756/93‑1 (MQ=255)
ggAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCa > 2:4973618/1‑93 (MQ=255)
ggAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCa < 2:2685012/93‑1 (MQ=255)
gAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCaa < 1:3192686/93‑1 (MQ=255)
gAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCaa < 2:3056182/93‑1 (MQ=255)
gAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCaa < 1:6335828/93‑1 (MQ=255)
gTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAata < 1:129797/93‑1 (MQ=255)
tAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAatat > 2:1058426/1‑93 (MQ=255)
aaTAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATAtt < 1:4666991/93‑1 (MQ=255)
aTAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTc < 2:4693781/93‑1 (MQ=255)
aTAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTc < 1:6428626/93‑1 (MQ=255)
aTAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTc > 2:2440304/1‑93 (MQ=255)
tAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTcc < 1:1275065/93‑1 (MQ=255)
tAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTcc < 1:4616717/93‑1 (MQ=255)
aGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCt > 1:5740563/1‑93 (MQ=255)
gCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTg < 2:2901959/93‑1 (MQ=255)
gCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTg < 1:3538097/93‑1 (MQ=255)
cGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTgg < 1:80587/93‑1 (MQ=255)
cGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTgg < 1:1236867/93‑1 (MQ=255)
gTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTggg < 2:3118884/93‑1 (MQ=255)
ttAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGc > 2:2353728/1‑93 (MQ=255)
tAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCg < 2:1760457/93‑1 (MQ=255)
tAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCg < 2:3970871/93‑1 (MQ=255)
tAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCg < 1:2371923/93‑1 (MQ=255)
aaCATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGt > 1:3700239/1‑93 (MQ=255)
attattattAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAgc > 2:733998/1‑93 (MQ=255)
tattattaATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAgcgc < 2:5830105/93‑1 (MQ=255)
ttattaATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGctc < 2:202690/93‑1 (MQ=255)
tattaATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGctct < 1:3406002/93‑1 (MQ=255)
tattaATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGctct < 1:4359606/93‑1 (MQ=255)
attaATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCtctt > 2:5720994/1‑93 (MQ=255)
attaATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCtctt < 2:1039128/93‑1 (MQ=255)
ttaGTAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCtcttc < 1:2395596/93‑1 (MQ=255)
ttaATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCtcttc > 2:1540117/1‑93 (MQ=255)
taataCCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCtttt < 2:1441406/93‑1 (MQ=255)
taataCCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCtttt > 2:5850554/1‑93 (MQ=255)
taataCCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCtttt > 2:798621/1‑93 (MQ=255)
ataCCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAg < 2:6005304/93‑1 (MQ=255)
taCCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAgg < 2:3678109/93‑1 (MQ=255)
aCCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAggg > 1:2902763/1‑93 (MQ=255)
cccGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGa > 1:4463451/1‑93 (MQ=255)
ccGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGaa > 2:6296304/1‑93 (MQ=255)
cGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGaaa < 1:188550/93‑1 (MQ=255)
gAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGaaaa < 2:3038768/93‑1 (MQ=255)
gAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGaaaa < 1:6276913/93‑1 (MQ=255)
aaaaaTTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAAc < 2:4804722/93‑1 (MQ=255)
aaaTTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAg < 2:6537518/93‑1 (MQ=255)
aaTTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAgg < 1:5206845/93‑1 (MQ=255)
aaTTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAgg > 2:5847361/1‑93 (MQ=255)
aaTTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAgg < 1:864644/93‑1 (MQ=255)
aTTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGga < 1:782145/93‑1 (MQ=255)
aTTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGga > 2:4485574/1‑93 (MQ=255)
aTTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGga < 1:2678588/93‑1 (MQ=255)
aTCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGaa < 1:1896012/93‑1 (MQ=255)
ccccTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAAccgc < 2:3227095/93‑1 (MQ=255)
ccccTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAAccgc < 2:5977698/93‑1 (MQ=255)
ccccTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAAccgc > 1:1759998/1‑93 (MQ=255)
ccccTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAAccgc > 1:3953805/1‑93 (MQ=255)
cccTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAAccgcc < 1:1531123/93‑1 (MQ=255)
cccTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAAccgcc < 2:3458898/93‑1 (MQ=255)
cccTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAAccgcc > 1:3920628/1‑93 (MQ=255)
cccTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAAccgcc > 1:1988472/1‑93 (MQ=255)
cccTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAAccgcc < 1:3517091/93‑1 (MQ=255)
cccTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAAccgcc < 2:2230031/93‑1 (MQ=255)
ccTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAAccgccg > 2:5180430/1‑93 (MQ=255)
ccTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAAccgccg > 1:4500694/1‑93 (MQ=255)
cTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGa > 1:3439094/1‑93 (MQ=255)
cTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGa > 2:5882283/1‑93 (MQ=255)
tGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGaa < 2:3169824/93‑1 (MQ=255)
tGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGaa > 2:4600943/1‑93 (MQ=255)
tAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTa > 1:3214688/1‑93 (MQ=255)
tAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTa < 1:2471767/93‑1 (MQ=255)
tAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTa > 1:2887848/1‑93 (MQ=255)
aaaGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTAt > 1:2905048/1‑93 (MQ=255)
aaGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTAtc > 1:5113243/1‑93 (MQ=255)
aaGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTAtc < 2:2736376/93‑1 (MQ=255)
aaGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTAtc > 1:391570/1‑93 (MQ=255)
aGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTAtct < 1:3515637/93‑1 (MQ=255)
aGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTAtct < 1:5319505/93‑1 (MQ=255)
aGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTAtct < 1:2617580/93‑1 (MQ=255)
aGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTAtct < 2:5233154/93‑1 (MQ=255)
gTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTAtctc > 2:1172534/1‑93 (MQ=255)
gTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTAtctc < 2:2475424/93‑1 (MQ=255)
gTATTTACGCCTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTAtctc < 2:1012551/93‑1 (MQ=255)
aTTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTa < 1:4324509/93‑1 (MQ=255)
ttACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTAtt < 2:5205130/93‑1 (MQ=255)
gCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTtata < 1:5616393/93‑1 (MQ=255)
ttAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAAt < 1:6111732/93‑1 (MQ=255)
tAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAAtt < 1:733998/93‑1 (MQ=255)
gagaCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTa > 2:466936/1‑93 (MQ=255)
gagaCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTa > 2:3837096/1‑93 (MQ=255)
agGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTaa > 1:1835013/1‑93 (MQ=255)
|
ATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTAA > NC_000913/2786496‑2786675
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTAA > NC_000913/2786492‑2786675
|
GAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGA < SRR4302547.912742/94‑1 (MQ=60)
AATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGAC < SRR4302547.1862984/94‑1 (MQ=60)
ATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGA > SRR4302547.2848415/1‑94 (MQ=60)
CAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACT < SRR4302547.5065573/94‑1 (MQ=60)
AAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCT > SRR4302547.1036667/1‑94 (MQ=60)
AAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCT < SRR4302547.3445135/94‑1 (MQ=60)
GGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCA < SRR4302547.5528813/94‑1 (MQ=60)
GAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAAT < SRR4302547.3256303/94‑1 (MQ=60)
GAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAAT < SRR4302547.6467749/94‑1 (MQ=60)
GTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATAT < SRR4302547.132144/94‑1 (MQ=60)
AATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTC < SRR4302547.4763641/94‑1 (MQ=60)
ATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCC < SRR4302547.6562641/94‑1 (MQ=60)
TAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCT < SRR4302547.1300748/94‑1 (MQ=60)
TAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCT > SRR4302547.5859192/1‑94 (MQ=60)
TAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCT < SRR4302547.4712313/94‑1 (MQ=60)
GCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGG < SRR4302547.3610324/94‑1 (MQ=60)
CGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGG < SRR4302547.1261833/94‑1 (MQ=60)
CGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGG < SRR4302547.82091/94‑1 (MQ=60)
TAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGT < SRR4302547.2419997/94‑1 (MQ=60)
TAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGT > SRR4302547.3775752/1‑94 (MQ=60)
TATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTT < SRR4302547.3475302/94‑1 (MQ=60)
TATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTT < SRR4302547.4449149/94‑1 (MQ=60)
TTAGTAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCT < SRR4302547.2444121/94‑1 (MQ=60)
TACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGG > SRR4302547.2960645/1‑94 (MQ=60)
ACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGA > SRR4302547.4555688/1‑94 (MQ=60)
CGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAA < SRR4302547.192104/94‑1 (MQ=60)
GAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAAC < SRR4302547.6407319/94‑1 (MQ=60)
AATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGA < SRR4302547.5313989/94‑1 (MQ=60)
AATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGA < SRR4302547.881188/94‑1 (MQ=60)
ATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAG < SRR4302547.796933/94‑1 (MQ=60)
ATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAG < SRR4302547.2732378/94‑1 (MQ=60)
ATCCCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAAC < SRR4302547.1933506/94‑1 (MQ=60)
CCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGC > SRR4302547.1794875/1‑94 (MQ=60)
CCCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGC > SRR4302547.4034220/1‑94 (MQ=60)
CCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCC > SRR4302547.4000349/1‑94 (MQ=60)
CCCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCC > SRR4302547.2027954/1‑94 (MQ=60)
CCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCG < SRR4302547.1561597/94‑1 (MQ=60)
CCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCG < SRR4302547.3588885/94‑1 (MQ=60)
CCCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCG > SRR4302547.4593656/1‑94 (MQ=60)
CCTGGTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGA > SRR4302547.3509218/1‑94 (MQ=60)
GTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTA > SRR4302547.2945464/1‑94 (MQ=60)
GTAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTA > SRR4302547.3278819/1‑94 (MQ=60)
TAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTAT < SRR4302547.2521730/94‑1 (MQ=60)
TAAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTAT > SRR4302547.2962978/1‑94 (MQ=60)
AAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATC > SRR4302547.5218615/1‑94 (MQ=60)
AAAGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATC > SRR4302547.398842/1‑94 (MQ=60)
AGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTC < SRR4302547.5429187/94‑1 (MQ=60)
AGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTC > SRR4302547.4560041/1‑94 (MQ=60)
AGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTC < SRR4302547.3587407/94‑1 (MQ=60)
AGTATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTC < SRR4302547.2670318/94‑1 (MQ=60)
ATTTACGCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTAT < SRR4302547.4413530/94‑1 (MQ=60)
GCTTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAA < SRR4302547.5732294/94‑1 (MQ=60)
TTAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATT < SRR4302547.6238512/94‑1 (MQ=60)
TAGAGACGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTT < SRR4302547.747711/94‑1 (MQ=60)
GAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTAA > SRR4302547.1871290/1‑94 (MQ=60)
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GAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTAA > NC_000913/2786492‑2786675
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
