Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,898,541 |
T→C |
intergenic (‑246/‑73) |
b2774 ← / → yqcE |
putative oxidoreductase/putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,898,541 | 0 | T | C | 81.8%
| 427.9
/ 93.4
| 187 | intergenic (‑246/‑73) | b2774/yqcE | putative oxidoreductase/putative transport protein |
| Reads supporting (aligned to +/- strand): ref base T (12/22); new base C (56/97); total (68/119) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.17e-01 |
Only 100 of 196 total aligned reads displayed.
ATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCG > NC_000913/2898449‑2898633
|
tGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCga < 2:1319295/93‑1 (MQ=255)
tGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCga < 2:5412158/93‑1 (MQ=255)
tGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCga < 2:3748589/93‑1 (MQ=255)
gTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCgag > 2:3892363/1‑93 (MQ=255)
gTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACAACTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTgag > 2:3863695/1‑93 (MQ=255)
tCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTgag‑a < 1:5456586/93‑1 (MQ=255)
tCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCgag‑a < 2:5213162/93‑1 (MQ=255)
cAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑aa < 2:5556495/93‑1 (MQ=255)
aaaTAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑aaa > 2:4866145/1‑93 (MQ=255)
aataatTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑aaaa < 1:1875179/93‑1 (MQ=255)
ataatTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGGG‑aaaaa > 1:5900212/1‑92 (MQ=255)
ataatTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑aaaaa > 2:5863749/1‑92 (MQ=255)
taatTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑aaaaaa > 1:3537272/1‑91 (MQ=255)
taatTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGt > 1:2190251/1‑93 (MQ=255)
atTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTaa > 2:3297172/1‑93 (MQ=255)
tttAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATc < 1:1504521/93‑1 (MQ=255)
ttAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATcc < 2:4497523/93‑1 (MQ=255)
aaaaGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑c‑c > 2:2294320/1‑93 (MQ=255)
aaaaGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAATAATCCaac > 1:1893688/1‑91 (MQ=255)
aaaGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑Ct < 2:1225096/93‑1 (MQ=255)
aaaGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑Ct < 1:3902093/93‑1 (MQ=255)
aaGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTg < 1:6015091/93‑1 (MQ=255)
aaGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTg < 2:3842718/93‑1 (MQ=255)
gCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGaa > 2:1380185/1‑93 (MQ=255)
cAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGaaa > 1:5334692/1‑93 (MQ=255)
gAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGAAAgg < 2:1007387/93‑1 (MQ=255)
gAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAgg < 2:5803581/93‑1 (MQ=255)
gAAGCGTGATTACTCGCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGAAAgg < 1:4391317/93‑1 (MQ=255)
aGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGCAAGggc > 2:4963374/1‑93 (MQ=255)
aGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGggc < 2:3482551/93‑1 (MQ=255)
aGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGggc < 1:5688008/93‑1 (MQ=255)
aGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATACA‑C‑CTGAAAGggc > 1:2084300/1‑93 (MQ=255)
gTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑GAAAAAAAAACA‑C‑CTCAAAAgggggg > 2:170451/1‑92 (MQ=255)
tGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCC‑C‑CTGAAAGGGCGGCt > 2:2838645/1‑93 (MQ=255)
tGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCt < 1:1150754/93‑1 (MQ=255)
gATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑GAAAAAAATACA‑CACACAAAGGGGGGCt > 1:1371480/1‑93 (MQ=255)
gATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑CAAAGTAATCCACC‑CGGAAAgggggggt > 1:4873142/1‑91 (MQ=255)
gATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑CAAAGGAACACA‑C‑CTGAAAGGGCGGAtt > 1:773048/1‑93 (MQ=255)
ttACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTAc < 1:5156754/93‑1 (MQ=255)
ttACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTAc < 1:1948731/93‑1 (MQ=255)
tACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGAAGGGGCGGCTTACt < 1:5716910/93‑1 (MQ=255)
tctcACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACtttt > 1:2213470/1‑93 (MQ=255)
tctcACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACtttt > 1:3254946/1‑93 (MQ=255)
tcACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTtct < 2:4445412/93‑1 (MQ=255)
cacacaACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTtctc < 1:3873461/93‑1 (MQ=255)
acacaACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑GAAAGTAATCCA‑C‑CTGAAAGGGCGGCGTACTTTTctct > 2:5158344/1‑93 (MQ=255)
acacaACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTctct > 2:3375670/1‑93 (MQ=255)
acacaACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTctct > 2:6187108/1‑93 (MQ=255)
caacaCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCtttt < 1:2253057/93‑1 (MQ=255)
caacaCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCtttt < 2:2326408/93‑1 (MQ=255)
aacaCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCttttt < 2:1645539/93‑1 (MQ=255)
acacCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCtttttt < 1:37462/93‑1 (MQ=255)
acacCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCtttttt < 1:6317788/93‑1 (MQ=255)
acacCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCtttttt < 1:4762083/93‑1 (MQ=255)
cgccTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGTCTTACTTTTCGCttttttt < 1:6440615/91‑1 (MQ=255)
cacCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCttttttt < 1:1772938/93‑1 (MQ=255)
ctctGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGt < 2:2930214/93‑1 (MQ=255)
ctctGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCtttttttgtc > 1:6598337/1‑90 (MQ=255)
ctctGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCtttttttgtc < 1:3327130/93‑4 (MQ=255)
tctGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCtttttttgtct > 2:6395057/1‑89 (MQ=255)
tctGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGAAATCCA‑C‑CTCAAAGAGAGGGTTTCTTTTCttttttttttttt > 2:2570752/1‑90 (MQ=255)
ctGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCt > 2:4058293/1‑93 (MQ=255)
ctGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTa < 2:631788/93‑1 (MQ=255)
gCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTAtt < 2:2762111/93‑1 (MQ=255)
cTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTa < 1:886366/93‑1 (MQ=255)
tttCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTa > 2:307942/1‑93 (MQ=255)
tttCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTAc > 2:6488815/1‑93 (MQ=255)
tttCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTAc < 2:6241641/93‑1 (MQ=255)
tCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACaa > 1:2927924/1‑93 (MQ=255)
cATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGGAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCTTTTTTTT‑TCTATTACAAAt > 2:768968/1‑93 (MQ=255)
aTGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATg < 1:3175301/93‑1 (MQ=255)
gTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATggg < 1:1679303/93‑1 (MQ=255)
gTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATggg < 1:1052907/93‑1 (MQ=255)
ttatttatTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATggg < 1:29893/93‑1 (MQ=255)
ttatttatTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATTCA‑C‑CCGAAAGGGCGGCTTACTTTTCTCTTTTTTTT‑TCTATTACAAATGGGa > 2:5954131/1‑93 (MQ=255)
tatttattATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGaa < 1:3455698/93‑1 (MQ=255)
tttattATTTCAATTACTAGAGACCCGAGAAAAAAAAAACAA‑C‑CTGAAAGGGGGGCTT‑CTTTTTTTTTTTTTTTTTTTTTTTCAAAAggaata > 1:523264/1‑89 (MQ=255)
tttattATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATa < 1:3956975/93‑1 (MQ=255)
ttattaTTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATAc < 1:4637805/93‑1 (MQ=255)
tattatTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATAc > 2:5322850/1‑93 (MQ=255)
tattatTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATAc < 2:2057719/93‑1 (MQ=255)
tattTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGata > 2:924859/1‑93 (MQ=255)
attTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGata < 1:848716/93‑1 (MQ=255)
attTCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGatat < 2:1819217/93‑1 (MQ=255)
ttCAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGc > 2:2212813/1‑93 (MQ=255)
cAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCaa < 1:4727907/93‑1 (MQ=255)
cAATTACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCaa < 2:3627265/93‑1 (MQ=255)
ttACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAacac < 1:3694864/93‑1 (MQ=255)
ttACTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAacac < 1:6494228/93‑1 (MQ=255)
aCTAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACaa < 1:3819797/93‑1 (MQ=255)
cTAGAGACCCGAG‑AAAAGGAAACCA‑C‑CTGAAAGGGGGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCCACACAAc > 2:689998/1‑93 (MQ=255)
tAGAGACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGGGGCTTACTTTTCTCTTTTTTTT‑TCTATTACAAATGGGAATACGATATGCAACACAACt > 2:2935519/1‑93 (MQ=255)
tAGAGACCCGAG‑AAAAATAATCCA‑A‑CTGAAAAGGCGGCTTACTTTTCTC‑TTTTTTTGTCTTTTACAAATGGGAATACGATATTCAACACAACt > 1:5289951/1‑93 (MQ=255)
agagACCTGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACt > 1:2708552/1‑93 (MQ=255)
agagACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTc > 2:1110122/1‑93 (MQ=255)
agagACCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAAAACAACTc > 2:1877800/1‑93 (MQ=255)
gagaCCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCa < 2:2508047/93‑1 (MQ=255)
gaCCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCata > 1:2505029/1‑93 (MQ=255)
gaCCCGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCata > 2:4227361/1‑93 (MQ=255)
tGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCg > 1:690560/1‑93 (MQ=255)
|
ATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCA‑C‑CTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCG > NC_000913/2898449‑2898633
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCC > NC_000913/2898448‑2898635
|
TATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCT > SRR4302547.4078059/1‑94 (MQ=60)
TATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCC > SRR4302547.1415306/1‑94 (MQ=60)
TATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCC < SRR4302547.3373715/94‑1 (MQ=60)
ATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCG < SRR4302547.5539143/94‑1 (MQ=60)
ATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCG < SRR4302547.1681396/94‑1 (MQ=60)
TGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG < SRR4302547.1957232/94‑1 (MQ=60)
TCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAA < SRR4302547.5569328/94‑1 (MQ=60)
AAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACCCAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGGCCCGAGAAAA < SRR4302547.4814982/94‑1 (MQ=60)
AAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAA > SRR4302547.6041470/1‑94 (MQ=60)
AAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAA > SRR4302547.6427641/1‑94 (MQ=60)
AATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAG < SRR4302547.1912223/94‑1 (MQ=60)
AATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAG < SRR4302547.2277335/94‑1 (MQ=60)
ATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAaa > SRR4302547.3609487/1‑92 (MQ=60)
ATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGT > SRR4302547.2234199/1‑94 (MQ=60)
TTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATC > SRR4302547.879041/1‑94 (MQ=60)
TTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCC < SRR4302547.1534515/94‑1 (MQ=60)
TTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCC < SRR4302547.398713/94‑1 (MQ=60)
TTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCC < SRR4302547.1914066/94‑1 (MQ=60)
AAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACC < SRR4302547.2222733/94‑1 (MQ=60)
AAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAATAATCCAAC > SRR4302547.1931112/1‑94 (MQ=60)
AAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCT < SRR4302547.5819222/94‑1 (MQ=60)
AAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTG < SRR4302547.3981449/94‑1 (MQ=60)
AAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTG < SRR4302547.4900046/94‑1 (MQ=60)
AAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAaaaaatcacccca > SRR4302547.5859289/1‑81 (MQ=60)
AAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGA < SRR4302547.6139934/94‑1 (MQ=60)
AGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATACACCTGCA > SRR4302547.5421925/1‑94 (MQ=60)
GCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAA > SRR4302547.5444618/1‑94 (MQ=60)
GCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAA < SRR4302547.302110/94‑1 (MQ=60)
CAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAG < SRR4302547.482966/94‑1 (MQ=60)
CAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAG < SRR4302547.2969690/94‑1 (MQ=60)
AGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGG < SRR4302547.357806/94‑1 (MQ=60)
GAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGG < SRR4302547.1003493/94‑1 (MQ=60)
GAAGCGTGATTACTCGCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGG < SRR4302547.4481691/94‑1 (MQ=60)
AAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATACACCTGAAAGGGC > SRR4302547.2125858/1‑94 (MQ=60)
AGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCG < SRR4302547.5805457/94‑1 (MQ=60)
GTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCT < SRR4302547.3802080/94‑1 (MQ=60)
TGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGCAAAGTAATCCACCcggaaagggggggt > SRR4302547.4974124/1‑80 (MQ=60)
TGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGCAAAGGAACACACCTGAAAGGGCGGATT > SRR4302547.787661/1‑94 (MQ=60)
TGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTT < SRR4302547.1174025/94‑1 (MQ=60)
TGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTT < SRR4302547.1388493/94‑1 (MQ=60)
TGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTT < SRR4302547.5474516/94‑1 (MQ=60)
GATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAcaaaaatatacacacaaaggaggggct > SRR4302547.68923/1‑67 (MQ=60)
TTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACT < SRR4302547.5262941/94‑1 (MQ=60)
TTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACT < SRR4302547.1987364/94‑1 (MQ=60)
TACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAGGGGCGGCTTACTT < SRR4302547.5834994/94‑1 (MQ=60)
TACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTT < SRR4302547.3930517/94‑1 (MQ=60)
TCTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTT < SRR4302547.6452731/94‑1 (MQ=60)
CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAaaaaaaaaacccaaaaagggggggtctttt > SRR4302547.3557169/1‑64 (MQ=60)
CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTT > SRR4302547.3319986/1‑94 (MQ=60)
CTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTT > SRR4302547.2257987/1‑94 (MQ=60)
TCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTC < SRR4302547.3850245/94‑1 (MQ=60)
CACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCT < SRR4302547.3952288/94‑1 (MQ=60)
CACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTT > SRR4302547.3314391/1‑94 (MQ=60)
ACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTT < SRR4302547.832860/94‑1 (MQ=60)
CAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTT < SRR4302547.5771706/94‑1 (MQ=60)
CAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTT < SRR4302547.2298548/94‑1 (MQ=60)
ACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTT < SRR4302547.38157/94‑1 (MQ=60)
ACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTT < SRR4302547.4860744/94‑1 (MQ=60)
ACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTT < SRR4302547.6449160/94‑1 (MQ=60)
CGCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGTCTTACTTTTCGCTTTTTTTG < SRR4302547.6574847/94‑1 (MQ=60)
CACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTG < SRR4302547.1808082/94‑1 (MQ=60)
ACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTgt < SRR4302547.722452/94‑3 (MQ=60)
CCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTC > SRR4302547.6735694/1‑94 (MQ=60)
CTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCT < SRR4302547.1849125/94‑1 (MQ=60)
CTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCT < SRR4302547.3394370/94‑1 (MQ=60)
TCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAATAATCCACCTGAAAGGGCGGCTTTCTTTT‑TTTTTTTTTTGTCTT > SRR4302547.5276433/1‑94 (MQ=60)
TGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTAT < SRR4302547.2253696/94‑1 (MQ=60)
GCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTA < SRR4302547.143840/94‑1 (MQ=60)
CTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTAC < SRR4302547.903397/94‑1 (MQ=60)
TTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAA > SRR4302547.2986307/1‑94 (MQ=60)
TCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGGAAAGTAATTCACCTGAAAAGGCGGCTTTCTTTTTTTTTTTTTTTtcttttataaa > SRR4302547.2715635/1‑83 (MQ=57)
ATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGG < SRR4302547.3238525/94‑1 (MQ=60)
TGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGG < SRR4302547.5349049/94‑1 (MQ=60)
GTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGA < SRR4302547.1073816/94‑1 (MQ=60)
GTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGA < SRR4302547.1712371/94‑1 (MQ=60)
TTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGA < SRR4302547.30434/94‑1 (MQ=60)
TATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAA > SRR4302547.3372509/1‑94 (MQ=60)
TATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAAT < SRR4302547.1566295/94‑1 (MQ=60)
TATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAAT < SRR4302547.3526146/94‑1 (MQ=60)
TTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATAC < SRR4302547.4037469/94‑1 (MQ=60)
TTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACG < SRR4302547.4733871/94‑1 (MQ=60)
TTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTAGTCTATTACAAATGGGAATACGATA < SRR4302547.6717512/94‑1 (MQ=60)
TATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATAT > SRR4302547.3413919/1‑94 (MQ=60)
ATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATAT < SRR4302547.864924/94‑1 (MQ=60)
CAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAAC < SRR4302547.4825884/94‑1 (MQ=60)
TTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACA < SRR4302547.3770288/94‑1 (MQ=60)
TTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACA < SRR4302547.6629418/94‑1 (MQ=60)
TACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTTTC‑TTTTTTTGTCTATTACAAATTGGAATACCATATTCAAAACAA > SRR4302547.5203133/1‑94 (MQ=60)
ACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAAC < SRR4302547.3897631/94‑1 (MQ=60)
CTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACT < SRR4302547.5924418/94‑1 (MQ=60)
CTAGAGACCCGAGAAAAATAATCCAACTGAAAAGGCGGCTTACTTTTCTC‑TTTTTTTGTCTTTTACAAATGGGAATACGATATTCAACACAACT > SRR4302547.5399074/1‑94 (MQ=60)
TAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACT > SRR4302547.2762929/1‑94 (MQ=60)
TAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTC > SRR4302547.1991612/1‑94 (MQ=60)
GAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCAT < SRR4302547.6615944/94‑1 (MQ=60)
GAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCAT > SRR4302547.4592537/1‑94 (MQ=60)
TGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATA > SRR4302547.2555654/1‑94 (MQ=60)
GACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATA < SRR4302547.6767781/94‑1 (MQ=60)
ACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATAT < SRR4302547.1796735/94‑1 (MQ=60)
ACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATC < SRR4302547.3163281/94‑1 (MQ=60)
CCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATC < SRR4302547.2493513/94‑1 (MQ=60)
CCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATtc > SRR4302547.1481487/1‑92 (MQ=60)
CTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCG > SRR4302547.703308/1‑94 (MQ=60)
CGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCC < SRR4302547.2636642/94‑1 (MQ=60)
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TATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCC > NC_000913/2898448‑2898635
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
