Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,898,589 |
(T)8→7 |
intergenic (‑294/‑25) |
b2774 ← / → yqcE |
putative oxidoreductase/putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,898,582 | 0 | T | . | 80.0%
| 494.4
/ 171.5
| 180 | intergenic (‑287/‑32) | b2774/yqcE | putative oxidoreductase/putative transport protein |
| Reads supporting (aligned to +/- strand): ref base T (14/22); new base . (52/92); total (66/114) |
| Fisher's exact test for biased strand distribution p-value = 8.47e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.99e-01 |
Only 100 of 213 total aligned reads displayed.
ACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCG > NC_000913/2898490‑2898671
|
acacaACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTctct > 2:6187108/1‑93 (MQ=255)
acaacaCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCttt < 1:817341/93‑1 (MQ=255)
acaacaCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCttt > 1:3249475/1‑93 (MQ=255)
acaacaCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCttt < 2:3668868/93‑1 (MQ=255)
caacaCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCtttt < 1:2253057/93‑1 (MQ=255)
acacCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCtttttt < 2:3390987/93‑1 (MQ=255)
cgccTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGTCTTACTTTTCGCttttttt < 1:6440615/91‑1 (MQ=255)
cacCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCttttttt < 1:1772938/93‑1 (MQ=255)
ccTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTg < 2:2900017/93‑1 (MQ=255)
ctctGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCtttttttgtc < 2:5077829/93‑4 (MQ=255)
tctGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCtttttttgtct > 2:1850844/1‑89 (MQ=255)
ctGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCt < 2:1810649/93‑1 (MQ=255)
ctGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCt > 2:4058293/1‑93 (MQ=255)
ctGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTa < 2:631788/93‑1 (MQ=255)
gCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTAtt < 2:2762111/93‑1 (MQ=255)
gCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTAtt < 1:141281/93‑1 (MQ=255)
tttCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTa > 2:307942/1‑93 (MQ=255)
tttCCATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTAc > 2:6488815/1‑93 (MQ=255)
ccATGTTATTTATTATTTCAATTACTAGAGACCCGAG‑GAAAGTAATTCACCTGAAAAGGCGGCTTTCTTTT‑TTTTTTTTTTTTCTTTTATaaa > 1:2662142/1‑93 (MQ=255)
aTGTTATTTATTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATg < 1:3175301/93‑1 (MQ=255)
ttatttatTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATggg < 1:29893/93‑1 (MQ=255)
ttatttatTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATTCACCCGAAAGGGCGGCTTACTTTTCTCTTTTTTTT‑TCTATTACAAATGGGa > 2:5954131/1‑93 (MQ=255)
ttatttatTATTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGa < 2:2024766/93‑1 (MQ=255)
atttattATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGaa > 1:3305887/1‑93 (MQ=255)
tttattATTTCAATTACTAGAGACCCGAGAAAAAAAAAACAACCTGAAAGGGGGGCTT‑CTTTTTTTTTTTTTTTTTTTTTTTCAAAAggaata > 1:523264/1‑89 (MQ=255)
tattatTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATAc > 2:5322850/1‑93 (MQ=255)
tattatTTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACg < 2:90583/93‑1 (MQ=255)
ttattTCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTAGTCTATTACAAATGGGAATACGat < 1:6580481/93‑1 (MQ=255)
attTCAATTACTAGAGACCTGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGata < 1:848716/93‑1 (MQ=255)
ttCAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGc > 2:2212813/1‑93 (MQ=255)
cAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCaa < 2:3627265/93‑1 (MQ=255)
cAATTACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCaa < 1:4727907/93‑1 (MQ=255)
aTTACTAGAGACCTGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCaaa > 2:6047603/1‑92 (MQ=255)
ttACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAacac < 1:6494228/93‑1 (MQ=255)
ttACTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAacac < 1:3694864/93‑1 (MQ=255)
aCTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTTTC‑TTTTTTTGTCTATTACAAATTGGAATACCATATTCAAAACaa > 1:5098016/1‑93 (MQ=255)
aCTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACaa < 1:3819797/93‑1 (MQ=255)
cTAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAAc < 1:5804328/93‑1 (MQ=255)
cTAGAGACCCGAG‑AAAAGGAAACCACCTGAAAGGGGGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCCACACAAc > 2:689998/1‑93 (MQ=255)
tAGAGACCCGAG‑AAAAGTAATCCACCTGAAAGGGGGGCTTACTTTTCTCTTTTTTTT‑TCTATTACAAATGGGAATACGATATGCAACACAACt > 2:2935519/1‑93 (MQ=255)
tAGAGACCCGAG‑AAAAATAATCCAACTGAAAAGGCGGCTTACTTTTCTC‑TTTTTTTGTCTTTTACAAATGGGAATACGATATTCAACACAACt > 1:5289951/1‑93 (MQ=255)
agagACCTGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACt > 1:2708552/1‑93 (MQ=255)
agagACCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTc > 2:1110122/1‑93 (MQ=255)
agaCCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCat > 1:4499590/1‑93 (MQ=255)
gaCCTGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCat < 1:6629771/93‑1 (MQ=255)
gaCCCGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCata > 1:2505029/1‑93 (MQ=255)
tGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCg > 1:690560/1‑93 (MQ=255)
cgag‑aAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGc < 1:2584487/92‑1 (MQ=255)
gag‑aAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGcc > 2:5877154/1‑93 (MQ=255)
ag‑aAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCg < 2:6438725/93‑1 (MQ=255)
g‑aAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGt < 1:5432991/93‑1 (MQ=255)
aaaaGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGtt < 2:5006026/93‑1 (MQ=255)
aaaGTAATCCTCCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGtt < 1:6038379/93‑1 (MQ=255)
aaaGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGtt < 2:2333344/93‑1 (MQ=255)
aaaGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTg < 1:3943775/93‑1 (MQ=255)
aaGTAATCCACCTGCAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTgg > 1:4621524/1‑93 (MQ=255)
gTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACTAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGAt < 2:5823263/93‑1 (MQ=255)
gTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGAt > 2:3343547/1‑93 (MQ=255)
gTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGAt < 1:1478147/93‑1 (MQ=255)
tAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGAt < 1:1929842/93‑1 (MQ=255)
tAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATa < 1:4026309/93‑1 (MQ=255)
aTCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAAc < 2:347914/93‑1 (MQ=255)
ccACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAGCACAACTCATATCGCCGTTGGATAAccc < 1:3369317/93‑1 (MQ=255)
cACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAAccc > 2:2466032/1‑93 (MQ=255)
cACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCt < 2:4508680/93‑1 (MQ=255)
cACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCt < 2:2321561/93‑1 (MQ=255)
cccTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCt < 1:5947729/92‑1 (MQ=255)
ccTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTcg < 1:1230115/93‑1 (MQ=255)
cTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTcgc < 1:1713766/93‑1 (MQ=255)
tGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTcgcg < 1:948125/93‑1 (MQ=255)
tGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTcgcg < 2:1438147/93‑1 (MQ=255)
gAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGTAACACAACTCATATCGCCGTTGGATAACCCTCGCGa < 1:239697/93‑1 (MQ=255)
gAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGa > 1:2160744/1‑93 (MQ=255)
aaaGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGAt > 2:4171449/1‑93 (MQ=255)
aaGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATa > 1:4418845/1‑93 (MQ=255)
aaGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATa < 1:5577778/93‑1 (MQ=255)
aGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATaa < 2:1250603/93‑1 (MQ=255)
aGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATaa < 1:3008704/93‑1 (MQ=255)
aGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATaa < 2:5503774/93‑1 (MQ=255)
gggCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAAt > 2:6291051/1‑93 (MQ=255)
gcggcTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTa < 2:4480484/93‑1 (MQ=255)
cggcTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAg > 2:2514370/1‑93 (MQ=255)
agcTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGt < 2:6380784/92‑1 (MQ=255)
gcTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGt < 1:3456634/93‑1 (MQ=255)
cTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGtt < 2:2578300/93‑1 (MQ=255)
cTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGttt < 2:4891828/93‑1 (MQ=255)
cTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGttt > 1:5655713/1‑93 (MQ=255)
ttACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGtttt > 1:1021058/1‑93 (MQ=255)
ttACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGtttt > 2:5657708/1‑93 (MQ=255)
ttACTTTTCTC‑TTTTTTCGTCTATTACAAATGTGAAGACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGtttt < 2:2156627/93‑1 (MQ=255)
tACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTa < 2:4326215/93‑1 (MQ=255)
tcTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTa < 2:107729/92‑1 (MQ=255)
tcTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAg < 2:3193514/92‑1 (MQ=255)
cTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAgc > 1:3338058/1‑93 (MQ=255)
cTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAgc < 1:2294320/93‑1 (MQ=255)
cTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAgc < 2:1751642/93‑1 (MQ=255)
ttttCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAgcg < 1:5158344/93‑1 (MQ=255)
ttttCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAgcg < 2:3951927/93‑1 (MQ=255)
ttttCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAgcg > 1:1621928/1‑93 (MQ=255)
tttCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAgcgg > 2:3280609/1‑93 (MQ=255)
|
ACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAG‑AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCG > NC_000913/2898490‑2898671
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGT > NC_000913/2898496‑2898679
|
CGCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGTCTTACTTTTCGCTTTTTTTG < SRR4302547.6574847/94‑1 (MQ=60)
CACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTG < SRR4302547.1808082/94‑1 (MQ=60)
CCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTC > SRR4302547.6735694/1‑94 (MQ=60)
CTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCT < SRR4302547.3394370/94‑1 (MQ=60)
CTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCT < SRR4302547.1849125/94‑1 (MQ=60)
TCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAATAATCCACCTGAAAGGGCGGCTTTCTTTT‑TTTTTTTTTTGTCTT > SRR4302547.5276433/1‑94 (MQ=60)
TGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTAT < SRR4302547.2253696/94‑1 (MQ=60)
GCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTA < SRR4302547.143840/94‑1 (MQ=60)
CTTTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTAC < SRR4302547.903397/94‑1 (MQ=60)
TTCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAA > SRR4302547.2986307/1‑94 (MQ=60)
TCCATGTTATTTATTATTTCAATTACTAGAGACCCGAGGAAAGTAATTCACCTGAAAAGGCGGCTTTCTTTTTTTTTTTTTTTtcttttataaa > SRR4302547.2715635/1‑83 (MQ=57)
ATGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGG < SRR4302547.3238525/94‑1 (MQ=60)
TGTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGG < SRR4302547.5349049/94‑1 (MQ=60)
GTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGA < SRR4302547.1073816/94‑1 (MQ=60)
GTTATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGA < SRR4302547.1712371/94‑1 (MQ=60)
TTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGA < SRR4302547.30434/94‑1 (MQ=60)
TATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAA > SRR4302547.3372509/1‑94 (MQ=60)
TATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAAT < SRR4302547.1566295/94‑1 (MQ=60)
TATTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAAT < SRR4302547.3526146/94‑1 (MQ=60)
TTTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATAC < SRR4302547.4037469/94‑1 (MQ=60)
TTATTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACG < SRR4302547.4733871/94‑1 (MQ=60)
TTATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTAGTCTATTACAAATGGGAATACGATA < SRR4302547.6717512/94‑1 (MQ=60)
TATTTCAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATAT > SRR4302547.3413919/1‑94 (MQ=60)
ATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATAT < SRR4302547.864924/94‑1 (MQ=60)
CAATTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAAC < SRR4302547.4825884/94‑1 (MQ=60)
TTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACA < SRR4302547.3770288/94‑1 (MQ=60)
TTACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACA < SRR4302547.6629418/94‑1 (MQ=60)
TACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTTTC‑TTTTTTTGTCTATTACAAATTGGAATACCATATTCAAAACAA > SRR4302547.5203133/1‑94 (MQ=60)
ACTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAAC < SRR4302547.3897631/94‑1 (MQ=60)
CTAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACT < SRR4302547.5924418/94‑1 (MQ=60)
CTAGAGACCCGAGAAAAATAATCCAACTGAAAAGGCGGCTTACTTTTCTC‑TTTTTTTGTCTTTTACAAATGGGAATACGATATTCAACACAACT > SRR4302547.5399074/1‑94 (MQ=60)
TAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACT > SRR4302547.2762929/1‑94 (MQ=60)
TAGAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTC > SRR4302547.1991612/1‑94 (MQ=60)
GAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCAT > SRR4302547.4592537/1‑94 (MQ=60)
GAGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCAT < SRR4302547.6615944/94‑1 (MQ=60)
TGACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATA > SRR4302547.2555654/1‑94 (MQ=60)
GACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATA < SRR4302547.6767781/94‑1 (MQ=60)
ACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATAT < SRR4302547.1796735/94‑1 (MQ=60)
ACCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATC < SRR4302547.3163281/94‑1 (MQ=60)
CCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATC < SRR4302547.2493513/94‑1 (MQ=60)
CCCGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATtc > SRR4302547.1481487/1‑92 (MQ=60)
CTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCG > SRR4302547.703308/1‑94 (MQ=60)
CGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCC < SRR4302547.2636642/94‑1 (MQ=60)
GAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCG > SRR4302547.5796193/1‑94 (MQ=60)
GAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTT < SRR4302547.3363494/94‑1 (MQ=60)
GAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTT < SRR4302547.5545299/94‑1 (MQ=60)
AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTT < SRR4302547.1312652/94‑1 (MQ=60)
AAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTG < SRR4302547.2602304/94‑1 (MQ=60)
AAAGTAATCCTCCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTG < SRR4302547.6163677/94‑1 (MQ=60)
AAAGTAATCCACCTGCAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGG > SRR4302547.4717223/1‑94 (MQ=60)
AAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGG < SRR4302547.4023987/94‑1 (MQ=60)
AAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGG < SRR4302547.2666457/94‑1 (MQ=60)
AAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGG < SRR4302547.4648410/94‑1 (MQ=60)
AAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGG < SRR4302547.5234766/94‑1 (MQ=60)
GTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATA < SRR4302547.2735392/94‑1 (MQ=60)
GTAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATA < SRR4302547.1507668/94‑1 (MQ=60)
TAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATA < SRR4302547.1968097/94‑1 (MQ=60)
TAATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAA < SRR4302547.4108110/94‑1 (MQ=60)
AATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAAC > SRR4302547.3295548/1‑94 (MQ=60)
AATCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAAC < SRR4302547.667411/94‑1 (MQ=60)
TCCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCC < SRR4302547.847845/94‑1 (MQ=60)
CCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAGCACAACTCATATCGCCGTTGGATAACCCT < SRR4302547.3437748/94‑1 (MQ=60)
CCACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCT < SRR4302547.2323247/94‑1 (MQ=60)
CACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCT < SRR4302547.2389441/94‑1 (MQ=60)
CACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTC < SRR4302547.5407794/94‑1 (MQ=60)
CACCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTC < SRR4302547.4515956/94‑1 (MQ=60)
CCCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTC < SRR4302547.6071066/94‑1 (MQ=60)
CCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGC > SRR4302547.5889371/1‑94 (MQ=60)
CCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGC > SRR4302547.705177/1‑94 (MQ=60)
CCTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGC < SRR4302547.1254928/94‑1 (MQ=60)
CTGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCG < SRR4302547.1747465/94‑1 (MQ=60)
TGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGA < SRR4302547.966534/94‑1 (MQ=60)
TGAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGA > SRR4302547.2203930/1‑94 (MQ=60)
GAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGTAACACAACTCATATCGCCGTTGGATAACCCTCGCGAT < SRR4302547.244183/94‑1 (MQ=60)
GAAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGAT < SRR4302547.4426193/94‑1 (MQ=60)
AAAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATA > SRR4302547.4510050/1‑94 (MQ=60)
AAGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAA < SRR4302547.5692800/94‑1 (MQ=60)
AGGGCGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAAT < SRR4302547.3068535/94‑1 (MQ=60)
CGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGT < SRR4302547.981651/94‑1 (MQ=60)
CGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGT < SRR4302547.614078/94‑1 (MQ=60)
CGGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGT < SRR4302547.4780578/94‑1 (MQ=60)
GGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTT > SRR4302547.3532737/1‑94 (MQ=60)
GGCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTT > SRR4302547.3731134/1‑94 (MQ=60)
GCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTT < SRR4302547.3527109/94‑1 (MQ=60)
GCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTT > SRR4302547.5772471/1‑94 (MQ=60)
GCTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTT < SRR4302547.2193735/94‑1 (MQ=60)
CTTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTT > SRR4302547.1041075/1‑94 (MQ=60)
TTACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTA > SRR4302547.693954/1‑94 (MQ=60)
TACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTA < SRR4302547.3942311/94‑1 (MQ=60)
TACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAG < SRR4302547.5668589/94‑1 (MQ=60)
TACTTTTCTC‑TTCTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAG < SRR4302547.3051448/94‑1 (MQ=60)
ACTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGC > SRR4302547.3405603/1‑94 (MQ=60)
CTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCG < SRR4302547.2340787/94‑1 (MQ=60)
CTTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCG > SRR4302547.1654021/1‑94 (MQ=60)
TTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGG > SRR4302547.6018067/1‑94 (MQ=60)
TTTTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGG < SRR4302547.5264559/94‑1 (MQ=60)
TTCTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCG > SRR4302547.3611065/1‑94 (MQ=60)
TCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCG > SRR4302547.2775581/1‑94 (MQ=60)
CTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGC < SRR4302547.6058979/94‑1 (MQ=60)
CTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGC > SRR4302547.3650963/1‑94 (MQ=60)
CTC‑TTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGC > SRR4302547.5495483/1‑94 (MQ=60)
CTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGT > SRR4302547.4611380/1‑94 (MQ=60)
TTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTTGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGT < SRR4302547.1831223/94‑1 (MQ=60)
TTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGT < SRR4302547.86757/94‑1 (MQ=60)
TTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGT < SRR4302547.1526175/94‑1 (MQ=60)
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CACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGT > NC_000913/2898496‑2898679
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
