Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,075,220	(T)_5→6	coding (256/357 nt)	yggP ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,075,215	1	.	T	100.0%	816.2 / NA	209	K87K (AAG→AAA)	yggP	hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (99/110); total (99/110)

Only 100 of 244 total aligned reads displayed.

ATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CC‑TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATC  >  NC_000913/3075123‑3075304

ataAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑cc                                                                                            >  2:2146023/1‑93 (MQ=255)

ataAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑cc                                                                                            <  1:1937195/93‑1 (MQ=255)

  aaGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CC‑tt                                                                                         <  2:4659997/93‑1 (MQ=255)

  aaGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CC‑tt                                                                                         <  1:2176102/93‑1 (MQ=255)

   aGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CC‑ttt                                                                                        >  1:1159560/1‑93 (MQ=255)

     tGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CC‑ttttt                                                                                      <  1:4577127/93‑1 (MQ=255)

         aTTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CC‑ttttttata                                                                                  >  2:723731/1‑89 (MQ=255)

         aTTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CC‑ttttttata                                                                                  <  2:1018835/93‑5 (MQ=255)

           tGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATAtt                                                                                 <  1:669029/93‑1 (MQ=255)

            gccgccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATAttt                                                                                <  2:1105287/93‑1 (MQ=255)

              cgccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGc                                                                              <  1:3088381/93‑1 (MQ=255)

               gccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGcc                                                                             <  2:6041976/93‑1 (MQ=255)

                ccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCa                                                                            <  1:5961284/93‑1 (MQ=255)

                ccAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCa                                                                            >  1:4529273/1‑93 (MQ=255)

                 cAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAg                                                                           >  1:3288066/1‑93 (MQ=255)

                    aaTATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTga                                                                        >  2:887226/1‑93 (MQ=255)

                    aaTATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTga                                                                        <  2:196013/93‑1 (MQ=255)

                    aaTATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTga                                                                        <  2:2585729/93‑1 (MQ=255)

                     atatTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTgag                                                                       <  2:5953306/93‑1 (MQ=255)

                      tatTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTgaga                                                                      <  1:3335195/93‑1 (MQ=255)

                      tatTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTgaga                                                                      <  1:5490112/93‑1 (MQ=255)

                       atTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGAt                                                                     <  2:1540505/93‑1 (MQ=255)

                        ttCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGAtt                                                                    >  2:306533/1‑93 (MQ=255)

                         tCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGAttt                                                                   >  1:1435805/1‑93 (MQ=255)

                         tCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGAttt                                                                   >  1:2008557/1‑93 (MQ=255)

                         tCGTAGCTGTAGCCCGCTGAATATCCGCTGGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGAttt                                                                   <  1:1063666/93‑1 (MQ=255)

                          cGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGAtttt                                                                  <  1:4805057/93‑1 (MQ=255)

                             aGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTAc                                                               <  1:4649970/93‑1 (MQ=255)

                              gCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTAcc                                                              >  1:621375/1‑93 (MQ=255)

                              gCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTAcc                                                              >  2:6579040/1‑93 (MQ=255)

                              gCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTAcc                                                              >  1:5111809/1‑93 (MQ=255)

                              gCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTAcc                                                              >  2:4991089/1‑93 (MQ=255)

                              gCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGCTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTAcc                                                              >  2:5239728/1‑93 (MQ=255)

                               cTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTAccc                                                             >  2:4303902/1‑93 (MQ=255)

                               cTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTAccc                                                             <  2:2502164/93‑1 (MQ=255)

                               cTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTAccc                                                             >  2:4793880/1‑93 (MQ=255)

                                  tAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACt                                                          <  1:5830266/93‑1 (MQ=255)

                                    gCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTc                                                        >  1:1286624/1‑93 (MQ=255)

                                    gCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTc                                                        >  1:1702287/1‑93 (MQ=255)

                                     cccGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCg                                                       <  2:408973/93‑1 (MQ=255)

                                       cGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGAc                                                     >  2:2422308/1‑93 (MQ=255)

                                        gCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACa                                                    >  1:3822452/1‑93 (MQ=255)

                                         cTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACaa                                                   >  1:5322447/1‑93 (MQ=255)

                                         cTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACaa                                                   <  1:2892991/93‑1 (MQ=255)

                                            aaTATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATaa                                                >  1:6550735/1‑93 (MQ=255)

                                            aaTATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATaa                                                >  1:3714292/1‑93 (MQ=255)

                                               atCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAAccc                                             <  1:2708183/93‑1 (MQ=255)

                                               atCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAAccc                                             <  2:45767/93‑1 (MQ=255)

                                               atCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAAccc                                             >  1:2907538/1‑93 (MQ=255)

                                                tCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAAcccc                                            <  2:2256538/93‑1 (MQ=255)

                                                 ccGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCg                                           <  2:2805730/93‑1 (MQ=255)

                                                  cGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCgg                                          >  2:5137607/1‑93 (MQ=255)

                                                  cGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCgg                                          <  1:367536/93‑1 (MQ=255)

                                                  cGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCgg                                          >  1:4411057/1‑93 (MQ=255)

                                                   gCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGc                                         >  2:269385/1‑93 (MQ=255)

                                                       ggTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACAt                                     >  2:3444211/1‑93 (MQ=255)

                                                         tAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTc                                   <  1:4352116/93‑1 (MQ=255)

                                                          aaCCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCa                                  >  2:5381903/1‑93 (MQ=255)

                                                          aaCCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCa                                  >  2:5874718/1‑93 (MQ=255)

                                                          aaCCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACACACTTCGACAATAACCCCGGCACATTCa                                  >  1:3237369/1‑93 (MQ=255)

                                                           aCCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCAt                                 <  2:5517684/93‑1 (MQ=255)

                                                           aCCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCAt                                 >  1:2478113/1‑93 (MQ=255)

                                                           aCCCCATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCAt                                 >  2:2829560/1‑93 (MQ=255)

                                                            ccccATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATg                                <  2:5649709/93‑1 (MQ=255)

                                                              ccATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGcc                              <  1:608418/93‑1 (MQ=255)

                                                              ccATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGcc                              <  1:767676/93‑1 (MQ=255)

                                                              ccATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGcc                              >  1:6391291/1‑93 (MQ=255)

                                                              ccATCGCCAGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGcc                              >  1:6478583/1‑93 (MQ=255)

                                                               cATCGCCGGTTGCAATATAGATCGTTGG‑CCTTTTTTATATGTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGccc                             <  1:5601462/93‑1 (MQ=255)

                                                               cATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGccc                             <  1:4841390/93‑1 (MQ=255)

                                                               cATCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGccc                             <  1:4845184/93‑1 (MQ=255)

                                                                aTCGCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCg                            <  2:6324504/93‑1 (MQ=255)

                                                                 tCGCCGGTTGTAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCgg                           >  1:470063/1‑93 (MQ=255)

                                                                   gCCGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTa                         <  2:3966266/93‑1 (MQ=255)

                                                                     cGGTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAAt                       >  1:1780369/1‑93 (MQ=255)

                                                                       gTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAAtaa                     >  1:5073759/1‑91 (MQ=255)

                                                                       gTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGa                     <  2:132828/93‑1 (MQ=255)

                                                                       gTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGa                     >  2:62400/1‑93 (MQ=255)

                                                                       gTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGa                     <  1:3942396/93‑1 (MQ=255)

                                                                       gTTGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGa                     <  2:1660692/93‑1 (MQ=255)

                                                                        ttGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGAc                    <  2:6206054/93‑1 (MQ=255)

                                                                        ttGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGAc                    >  1:1348008/1‑93 (MQ=255)

                                                                         tGCAATACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGAcc                   <  2:3194601/93‑1 (MQ=255)

                                                                            aaTACAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGga                >  2:1830306/1‑93 (MQ=255)

                                                                               aCAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGgatga             <  1:6434788/93‑1 (MQ=255)

                                                                                cAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGgatgat            >  1:5393569/1‑93 (MQ=255)

                                                                                cAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGgatgat            <  1:5153499/93‑1 (MQ=255)

                                                                                cAAAACGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGgatgat            <  1:4987567/93‑1 (MQ=255)

                                                                                 aaaaCGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGAtt           >  1:4270037/1‑93 (MQ=255)

                                                                                 aaaaCGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGAtt           >  1:6013098/1‑93 (MQ=255)

                                                                                 aaaaCGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGAtt           >  1:2110685/1‑93 (MQ=255)

                                                                                 aaaaCGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGAtt           >  1:6625638/1‑93 (MQ=255)

                                                                                  aaaCGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGAttt          >  1:4106991/1‑93 (MQ=255)

                                                                                   aaCGCTGGTCT‑TTTTTATATTTGCCAGTGAGATTTCTACCCCCTTCGACAATACCCCCGGCACATTCATGCCCGGTAATGACCGGATGAtttt         <  2:3858698/93‑1 (MQ=255)

                                                                                    aCGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTc        <  1:5735834/93‑1 (MQ=255)

                                                                                    aCGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTc        >  1:2780332/1‑93 (MQ=255)

                                                                                     cGCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCt       >  2:2981234/1‑93 (MQ=255)

                                                                                      gCTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTa      <  1:5475754/93‑1 (MQ=255)

                                                                                       cTGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATACCCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTaa     <  2:293797/93‑1 (MQ=255)

                                                                                        tGG‑CCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTaaa    <  2:1159560/93‑1 (MQ=255)

ATAAGTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGG‑CC‑TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATC  >  NC_000913/3075123‑3075304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTAC  >  NC_000913/3075127‑3075313

GTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTT                                                                                               >  SRR4302547.3280900/1‑94 (MQ=60)

 TGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTT                                                                                              <  SRR4302547.609871/94‑1 (MQ=60)

 TGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTT                                                                                              <  SRR4302547.4671868/94‑1 (MQ=60)

 TGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTT                                                                                              <  SRR4302547.1478053/94‑1 (MQ=60)

  GGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTta                                                                                             >  SRR4302547.6344134/1‑92 (MQ=60)

  GGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTta                                                                                             >  SRR4302547.1770904/1‑92 (MQ=60)

   GCATTGCCGCCAAAATATTCGTAGCTGAAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTT‑TAT                                                                                           <  SRR4302547.4745581/94‑1 (MQ=60)

    CATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATA                                                                                            <  SRR4302547.4712536/94‑1 (MQ=60)

    CATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATA                                                                                            >  SRR4302547.3136719/1‑94 (MQ=60)

       TGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTT                                                                                         <  SRR4302547.681342/94‑1 (MQ=60)

       TGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTT                                                                                         <  SRR4302547.453328/94‑1 (MQ=60)

          CGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCC                                                                                      >  SRR4302547.4557337/1‑94 (MQ=60)

          CGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCC                                                                                      >  SRR4302547.3030865/1‑94 (MQ=60)

          CGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCC                                                                                      <  SRR4302547.3149646/94‑1 (MQ=60)

          CGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTCGCAACCCCATCGCCGGCTGCAATACAAAACGCTGGCCTTTTTTATATTTGCC                                                                                      >  SRR4302547.6698438/1‑94 (MQ=60)

           GCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCA                                                                                     >  SRR4302547.4622883/1‑94 (MQ=60)

            CCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAG                                                                                    >  SRR4302547.3354047/1‑94 (MQ=60)

            CCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAG                                                                                    <  SRR4302547.6084905/94‑1 (MQ=60)

              AAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTG                                                                                  <  SRR4302547.5705096/94‑1 (MQ=60)

              AAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTG                                                                                  >  SRR4302547.6519620/1‑94 (MQ=60)

               AAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGA                                                                                 <  SRR4302547.3686619/94‑1 (MQ=60)

               AAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGA                                                                                 <  SRR4302547.2781682/94‑1 (MQ=60)

                  TATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGAT                                                                              <  SRR4302547.5603481/94‑1 (MQ=60)

                  TATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGAT                                                                              <  SRR4302547.3402658/94‑1 (MQ=60)

                   ATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATT                                                                             <  SRR4302547.4427634/94‑1 (MQ=60)

                    TTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTT                                                                            >  SRR4302547.1464511/1‑94 (MQ=60)

                    TTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTT                                                                            >  SRR4302547.2048523/1‑94 (MQ=60)

                    TTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTT                                                                            <  SRR4302547.6156348/94‑1 (MQ=60)

                    TTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTT                                                                            <  SRR4302547.2751511/94‑1 (MQ=60)

                     TCGTAGCTGTAGCCCGCTGAATATCCGCTGGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTT                                                                           <  SRR4302547.1084837/94‑1 (MQ=60)

                      CGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTT                                                                          <  SRR4302547.4904639/94‑1 (MQ=60)

                       GTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTA                                                                         <  SRR4302547.4800657/94‑1 (MQ=60)

                       GTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTA                                                                         <  SRR4302547.5180219/94‑1 (MQ=60)

                       GTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTA                                                                         <  SRR4302547.6020300/94‑1 (MQ=60)

                        TAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTAC                                                                        >  SRR4302547.4354032/1‑94 (MQ=60)

                         AGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACC                                                                       >  SRR4302547.5217152/1‑94 (MQ=60)

                         AGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACC                                                                       >  SRR4302547.5580208/1‑94 (MQ=60)

                         AGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACC                                                                       <  SRR4302547.4746290/94‑1 (MQ=60)

                         AGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACC                                                                       >  SRR4302547.3957286/1‑94 (MQ=60)

                         AGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACC                                                                       >  SRR4302547.632865/1‑94 (MQ=60)

                           CTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCA                                                                     <  SRR4302547.3914981/94‑1 (MQ=60)

                            TGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCAC                                                                    <  SRR4302547.4777568/94‑1 (MQ=60)

                             GTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACT                                                                   <  SRR4302547.5111536/94‑1 (MQ=60)

                              TAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTT                                                                  <  SRR4302547.5845055/94‑1 (MQ=60)

                              TAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTT                                                                  <  SRR4302547.3831605/94‑1 (MQ=60)

                              TAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTT                                                                  <  SRR4302547.5950907/94‑1 (MQ=60)

                               AGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTC                                                                 >  SRR4302547.6332343/1‑94 (MQ=60)

                               AGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTC                                                                 >  SRR4302547.1735734/1‑94 (MQ=60)

                               AGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTC                                                                 >  SRR4302547.1312532/1‑94 (MQ=60)

                                 CCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGA                                                               >  SRR4302547.1317524/1‑94 (MQ=60)

                                  CCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGAC                                                              >  SRR4302547.6788867/1‑94 (MQ=60)

                                   CGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTTAGATTTTTACCCACTTCTACA                                                             >  SRR4302547.1352726/1‑94 (MQ=60)

                                   CGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACA                                                             <  SRR4302547.1644447/94‑1 (MQ=60)

                                   CGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACA                                                             >  SRR4302547.3900337/1‑94 (MQ=60)

                                    GCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAA                                                            >  SRR4302547.5432168/1‑94 (MQ=60)

                                     CTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAAT                                                           <  SRR4302547.2950692/94‑1 (MQ=60)

                                     CTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAAT                                                           <  SRR4302547.6673936/94‑1 (MQ=60)

                                       GAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAA                                                         <  SRR4302547.1292747/94‑1 (MQ=60)

                                       GAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAA                                                         >  SRR4302547.6687060/1‑94 (MQ=60)

                                       GAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAA                                                         >  SRR4302547.3790110/1‑94 (MQ=60)

                                       GAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAA                                                         <  SRR4302547.2952827/94‑1 (MQ=60)

                                          TATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCC                                                      >  SRR4302547.2965519/1‑94 (MQ=60)

                                           ATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCC                                                     <  SRR4302547.853841/94‑1 (MQ=60)

                                           ATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCC                                                     <  SRR4302547.5028982/94‑1 (MQ=60)

                                           ATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCC                                                     <  SRR4302547.2762556/94‑1 (MQ=60)

                                            TCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCG                                                    <  SRR4302547.37504/94‑1 (MQ=60)

                                             CCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGG                                                   >  SRR4302547.3758325/1‑94 (MQ=60)

                                             CCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGG                                                   >  SRR4302547.4501990/1‑94 (MQ=60)

                                              CGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGC                                                  <  SRR4302547.374350/94‑1 (MQ=60)

                                                CTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCAC                                                <  SRR4302547.1850766/94‑1 (MQ=60)

                                                 TTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACA                                               <  SRR4302547.1894276/94‑1 (MQ=60)

                                                   GGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATT                                             >  SRR4302547.5435011/1‑94 (MQ=60)

                                                   GGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATT                                             >  SRR4302547.1435362/1‑94 (MQ=60)

                                                     TAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCA                                           >  SRR4302547.6158590/1‑94 (MQ=60)

                                                     TAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCA                                           <  SRR4302547.4441539/94‑1 (MQ=60)

                                                     TAACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACACACTTCGACAATAACCCCGGCACATTCA                                           >  SRR4302547.3301990/1‑94 (MQ=60)

                                                      AACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCAT                                          >  SRR4302547.2635069/1‑94 (MQ=60)

                                                      AACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCAT                                          >  SRR4302547.2528206/1‑94 (MQ=60)

                                                      AACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCAT                                          >  SRR4302547.3370009/1‑94 (MQ=60)

                                                      AACCCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACACCGGCACATTCAT                                          >  SRR4302547.5598410/1‑94 (MQ=60)

                                                         CCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCC                                       <  SRR4302547.4467117/94‑1 (MQ=60)

                                                         CCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCC                                       >  SRR4302547.6524641/1‑94 (MQ=60)

                                                         CCCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCC                                       >  SRR4302547.6775673/1‑94 (MQ=60)

                                                         CCCATCGCCAGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCC                                       >  SRR4302547.6613474/1‑94 (MQ=60)

                                                          CCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCC                                      <  SRR4302547.619730/94‑1 (MQ=60)

                                                          CCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCC                                      <  SRR4302547.4945457/94‑1 (MQ=60)

                                                          CCATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCC                                      <  SRR4302547.782181/94‑1 (MQ=60)

                                                           CATCGCCGGTTGCAATATAGATCGTTGGCCTTTTTTATATGTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCG                                     <  SRR4302547.5717024/94‑1 (MQ=60)

                                                           CATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCG                                     <  SRR4302547.4941724/94‑1 (MQ=60)

                                                           CATCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCG                                     <  SRR4302547.4945593/94‑1 (MQ=60)

                                                            ATCGCCGGTTGTAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGG                                    >  SRR4302547.478713/1‑94 (MQ=60)

                                                             TCGCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGT                                   <  SRR4302547.4920657/94‑1 (MQ=60)

                                                               GCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAA                                 <  SRR4302547.4643266/94‑1 (MQ=60)

                                                               GCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAA                                 <  SRR4302547.6558571/94‑1 (MQ=60)

                                                               GCCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAA                                 <  SRR4302547.3375678/94‑1 (MQ=60)

                                                                CCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAAT                                >  SRR4302547.2047130/1‑94 (MQ=60)

                                                                CCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAAT                                <  SRR4302547.3332538/94‑1 (MQ=60)

                                                                CCGGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAAT                                >  SRR4302547.1815654/1‑94 (MQ=60)

                                                                  TGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGA                              >  SRR4302547.478987/1‑94 (MQ=60)

                                                                  GGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGA                              >  SRR4302547.2048737/1‑94 (MQ=60)

                                                                  GGTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATAA                              >  SRR4302547.5178436/1‑94 (MQ=60)

                                                                   GTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGAC                             >  SRR4302547.1375067/1‑94 (MQ=60)

                                                                   GTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGAC                             >  SRR4302547.4222428/1‑94 (MQ=60)

                                                                   GTTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGAC                             <  SRR4302547.4022567/94‑1 (MQ=60)

                                                                    TTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACC                            <  SRR4302547.5357620/94‑1 (MQ=60)

                                                                    TTGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACC                            >  SRR4302547.657526/1‑94 (MQ=60)

                                                                     TGCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCG                           <  SRR4302547.664801/94‑1 (MQ=60)

                                                                      GCAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGG                          <  SRR4302547.2388167/94‑1 (MQ=60)

                                                                       CAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGA                         >  SRR4302547.5200601/1‑94 (MQ=60)

                                                                       CAATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGA                         >  SRR4302547.6033265/1‑94 (MQ=60)

                                                                        AATACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGAT                        >  SRR4302547.2941333/1‑94 (MQ=60)

                                                                          TACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGA                      <  SRR4302547.4059555/94‑1 (MQ=60)

                                                                           ACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGAT                     >  SRR4302547.5504989/1‑94 (MQ=60)

                                                                           ACAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGAT                     <  SRR4302547.6568908/94‑1 (MQ=60)

                                                                            CAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATT                    >  SRR4302547.6763569/1‑94 (MQ=60)

                                                                            CAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATT                    >  SRR4302547.4357675/1‑94 (MQ=60)

                                                                            CAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATT                    >  SRR4302547.6137898/1‑94 (MQ=60)

                                                                            CAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATT                    >  SRR4302547.2152739/1‑94 (MQ=60)

                                                                            CAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATT                    <  SRR4302547.5090683/94‑1 (MQ=60)

                                                                            CAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATT                    <  SRR4302547.5090684/94‑1 (MQ=60)

                                                                            CAAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATT                    <  SRR4302547.5259630/94‑1 (MQ=60)

                                                                             AAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATTACCGGATGATTT                   <  SRR4302547.5221600/94‑1 (MQ=60)

                                                                             AAAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTT                   >  SRR4302547.4190473/1‑94 (MQ=60)

                                                                              AAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTT                  <  SRR4302547.1097988/94‑1 (MQ=60)

                                                                              AAACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATCTT                  >  SRR4302547.893802/1‑94 (MQ=60)

                                                                               AACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATACCCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTC                 <  SRR4302547.5361550/94‑1 (MQ=60)

                                                                               AACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTC                 >  SRR4302547.2836031/1‑94 (MQ=60)

                                                                               AACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTC                 >  SRR4302547.2929354/1‑94 (MQ=60)

                                                                                ACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCT                <  SRR4302547.5854335/94‑1 (MQ=60)

                                                                                ACGCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCT                >  SRR4302547.720732/1‑94 (MQ=60)

                                                                                  GCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTCA              >  SRR4302547.5515498/1‑94 (MQ=60)

                                                                                  GCTGGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAA              <  SRR4302547.5588851/94‑1 (MQ=60)

                                                                                     GGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATC           >  SRR4302547.3613084/1‑94 (MQ=60)

                                                                                     GGCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATC           <  SRR4302547.6201051/94‑1 (MQ=60)

                                                                                      GCCTTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCG          <  SRR4302547.2682486/94‑1 (MQ=60)

                                                                                       cctTTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGT         <  SRR4302547.4968435/91‑1 (MQ=60)

                                                                                        T‑TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCG       <  SRR4302547.4482603/94‑1 (MQ=60)

                                                                                          TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGG      >  SRR4302547.42683/1‑94 (MQ=60)

                                                                                          TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGG      >  SRR4302547.181188/1‑94 (MQ=60)

                                                                                          TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGG      <  SRR4302547.1413211/94‑1 (MQ=60)

                                                                                          TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGG      <  SRR4302547.6042605/94‑1 (MQ=60)

                                                                                           TTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGG     >  SRR4302547.5459874/1‑94 (MQ=60)

                                                                                            TTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGT    <  SRR4302547.6752813/94‑1 (MQ=60)

                                                                                              TATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTAC  >  SRR4302547.3553697/1‑94 (MQ=60)

GTGGCATTGCCGCCAAAATATTCGTAGCTGTAGCCCGCTGAATATCCGCTTGGTAACCCCATCGCCGGTTGCAATACAAAACGCTGGCC‑TTTTTATATTTGCCAGTGAGATTTTTACCCACTTCGACAATAACCCCGGCACATTCATGCCCGGTAATGACCGGATGATTTTCTAAATCGTCGGGTAC  >  NC_000913/3075127‑3075313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`