Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,077,640 |
+G |
intergenic (‑291/+23) |
cmtB ← / ← tktA |
PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,077,640 | 1 | . | G | 99.5%
| 668.1
/ ‑4.1
| 181 | intergenic (‑291/+23) | cmtB/tktA | PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (129/51); total (130/51) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 202 total aligned reads displayed.
TATTGCATATAAATATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑C‑ACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACAGC > NC_000913/3077548‑3077726
|
tattGCATATAAATATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑c > 1:1709211/1‑93 (MQ=255)
tattGCATATAAATATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑c > 1:2993115/1‑93 (MQ=255)
tattGCATATAAATATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑c > 2:5887173/1‑93 (MQ=255)
attGCATATAAATATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑cg > 1:4878267/1‑92 (MQ=255)
attGCATATAAATATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑cg > 1:2591740/1‑92 (MQ=255)
ttGCATATAAATATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑cga > 2:1551884/1‑91 (MQ=255)
gCATATAAATATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑cgacc > 1:1325214/1‑89 (MQ=255)
tataAATATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCttt > 1:2707502/1‑93 (MQ=255)
ataAATATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCtttt > 1:2786986/1‑93 (MQ=255)
taAATATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCttttt < 2:772830/93‑1 (MQ=255)
taAATATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCttttt > 1:3890168/1‑93 (MQ=255)
taAATATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCttttt > 2:6117437/1‑93 (MQ=255)
aaaTATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCtttttc > 2:3392097/1‑92 (MQ=255)
aaTATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTAc > 1:2848723/1‑93 (MQ=255)
atatTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGAACTTTATAcc > 1:3259342/1‑93 (MQ=255)
atTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCg > 2:3828595/1‑93 (MQ=255)
atTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCg > 1:5839534/1‑93 (MQ=255)
tttGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGa > 1:3037651/1‑93 (MQ=255)
tgtgATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGaaa > 1:3808299/1‑93 (MQ=255)
tgtgATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGaaa < 2:2182187/93‑1 (MQ=255)
gtgATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAAt > 2:5559339/1‑93 (MQ=255)
gATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGc > 2:4495294/1‑93 (MQ=255)
aTCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCt > 1:1456825/1‑93 (MQ=255)
tCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTa > 1:1186565/1‑93 (MQ=255)
tCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTa > 1:1737040/1‑93 (MQ=255)
cTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTaa > 2:4860194/1‑93 (MQ=255)
cTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTaa > 1:2056978/1‑93 (MQ=255)
tACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAAt < 1:3761216/93‑1 (MQ=255)
tACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAAt > 1:5864998/1‑93 (MQ=255)
tACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTAACCGAAATGCTAAt < 2:248713/93‑1 (MQ=255)
acaacaCGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAAtt > 2:169333/1‑93 (MQ=255)
acaacaCGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAAtt > 2:649596/1‑93 (MQ=255)
aacaCGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTAc > 1:5931010/1‑93 (MQ=255)
aacaCGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTAc > 1:1440546/1‑93 (MQ=255)
aacaCGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGCAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTAc > 2:4151058/1‑93 (MQ=255)
acacGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTAca > 2:3966473/1‑93 (MQ=255)
cacGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTAcag > 2:4205259/1‑93 (MQ=255)
cccccTTATCCTATTGC‑TGTCCGGAAACCGAACTTATAAAGGAAAAAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTAcag < 1:938924/90‑1 (MQ=255)
ccTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGt > 1:5805655/1‑93 (MQ=255)
ccTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGt > 1:2001170/1‑93 (MQ=255)
ttAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTc < 2:3759287/93‑1 (MQ=255)
ttAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTc > 2:1208945/1‑93 (MQ=255)
tAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCt > 1:234783/1‑93 (MQ=255)
tAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCt > 1:5558062/1‑93 (MQ=255)
aT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCtt > 2:5356541/1‑93 (MQ=255)
t‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCttt > 2:4760852/1‑93 (MQ=255)
t‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCttt > 2:6194493/1‑93 (MQ=255)
t‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCttt > 1:2395134/1‑93 (MQ=255)
t‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCttt > 2:1471738/1‑93 (MQ=255)
tATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTg > 2:3075955/1‑93 (MQ=255)
tATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTg > 1:1106245/1‑93 (MQ=255)
aTTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGc < 2:215530/93‑1 (MQ=255)
aTTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGc > 1:1986335/1‑93 (MQ=255)
ttGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCt > 2:4664038/1‑93 (MQ=255)
tGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCtt > 1:911751/1‑93 (MQ=255)
tGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCtt > 2:4720765/1‑93 (MQ=255)
cTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTc > 1:2941499/1‑93 (MQ=255)
cTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTc < 2:3017193/93‑1 (MQ=255)
ttGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCg > 2:6289686/1‑93 (MQ=255)
tGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGc > 2:375527/1‑93 (MQ=255)
ccGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAGCC‑ACCTTTTTACTCGAAATGCTAATTACAGCAGTTCTGTTGCTTTCGcaac > 1:3568417/1‑93 (MQ=255)
ccGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGcaac > 2:5148441/1‑93 (MQ=255)
cAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCaacaac > 2:5090425/1‑93 (MQ=255)
aaa‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACg < 2:3685242/93‑1 (MQ=255)
a‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGtt < 2:3531387/93‑1 (MQ=255)
ggACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTAt > 1:6649499/1‑93 (MQ=255)
gACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATc < 2:1902371/93‑1 (MQ=255)
atatCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAAc > 2:2049233/1‑93 (MQ=255)
tatCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACa > 1:4856649/1‑93 (MQ=255)
atCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAg > 1:2168072/1‑93 (MQ=255)
cAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTg > 1:757750/1‑93 (MQ=255)
aaGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGa > 2:2311631/1‑93 (MQ=255)
aaGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGa > 1:2451133/1‑93 (MQ=255)
aGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGaa < 1:4302447/93‑1 (MQ=255)
aGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGaa > 2:5024379/1‑93 (MQ=255)
aGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGaa < 1:5559059/93‑1 (MQ=255)
ggTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAg > 2:438093/1‑93 (MQ=255)
gTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGc > 1:5610808/1‑93 (MQ=255)
gTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGc < 2:1005756/93‑1 (MQ=255)
gTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGc < 1:3199804/93‑1 (MQ=255)
taataaAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGcc > 2:4596712/1‑93 (MQ=255)
aataaAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCg < 2:4618347/93‑1 (MQ=255)
taaAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGaa > 2:5611073/1‑93 (MQ=255)
aaaaaaGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAAc < 1:5042599/93‑1 (MQ=255)
aaaaaGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAAct > 2:1876505/1‑93 (MQ=255)
aaaaGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAActc < 1:4437158/93‑1 (MQ=255)
aaaGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAActct > 2:4129995/1‑93 (MQ=255)
aaaGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAActct > 1:490265/1‑93 (MQ=255)
aaGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCtt < 2:5627911/93‑1 (MQ=255)
aaGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCtt < 1:1328026/93‑1 (MQ=255)
ggTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCa < 2:5937807/93‑1 (MQ=255)
gTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCaa < 2:3117064/93‑1 (MQ=255)
cGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAAc < 2:5414103/93‑1 (MQ=255)
cGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAAc > 2:3919042/1‑93 (MQ=255)
cGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAAc < 2:254703/93‑1 (MQ=255)
cGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAAc < 1:1003343/93‑1 (MQ=255)
gCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAAca > 2:4540816/1‑93 (MQ=255)
ccGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAAcag > 2:141932/1‑93 (MQ=255)
ccGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAAcag > 1:3050083/1‑93 (MQ=255)
cGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAAcagc > 1:6112267/1‑93 (MQ=255)
|
TATTGCATATAAATATTTGTGATCTACAACACGCCTTAT‑CTATTGCTTGTCCGCAAA‑CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑C‑ACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACAGC > NC_000913/3077548‑3077726
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑C‑ACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACAGCAGCTCTG > NC_000913/3077547‑3077733
|
TTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑C > SRR4302547.2995613/1‑94 (MQ=60)
TTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑C > SRR4302547.3052653/1‑94 (MQ=60)
TTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑C > SRR4302547.1742824/1‑94 (MQ=60)
TATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑C‑G > SRR4302547.2644017/1‑94 (MQ=60)
TATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑C‑G > SRR4302547.4979337/1‑94 (MQ=60)
TATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑C‑G > SRR4302547.3858798/1‑94 (MQ=60)
TATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑C‑G > SRR4302547.1741432/1‑94 (MQ=60)
ATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑Cga < SRR4302547.4265834/94‑3 (MQ=60)
TGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACC > SRR4302547.1351852/1‑94 (MQ=60)
ATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTT > SRR4302547.2761867/1‑94 (MQ=60)
ATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTT > SRR4302547.5076027/1‑94 (MQ=60)
TATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTT > SRR4302547.2842808/1‑94 (MQ=60)
ATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTT > SRR4302547.3969288/1‑94 (MQ=60)
AAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTAC > SRR4302547.2905638/1‑94 (MQ=60)
AATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑Cgaactttatacc > SRR4302547.3324497/1‑82 (MQ=60)
AATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACC > SRR4302547.4979908/1‑94 (MQ=60)
ATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCC > SRR4302547.3077661/1‑94 (MQ=60)
TATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCG > SRR4302547.5960362/1‑94 (MQ=60)
ATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGA > SRR4302547.3098098/1‑94 (MQ=60)
ATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGA > SRR4302547.569933/1‑94 (MQ=60)
TTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAA > SRR4302547.3885923/1‑94 (MQ=60)
TGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAAT > SRR4302547.109326/1‑94 (MQ=60)
GTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATG < SRR4302547.94052/94‑1 (MQ=60)
TGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGC > SRR4302547.2423800/1‑94 (MQ=60)
GATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCT > SRR4302547.1485942/1‑94 (MQ=60)
ATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTA > SRR4302547.1210530/1‑94 (MQ=60)
ATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTA > SRR4302547.1771179/1‑94 (MQ=60)
ATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTA > SRR4302547.565905/1‑94 (MQ=60)
TCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAA > SRR4302547.2098021/1‑94 (MQ=60)
TCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAA < SRR4302547.5988045/94‑1 (MQ=60)
CTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAAT > SRR4302547.6242693/1‑94 (MQ=60)
CTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAAT > SRR4302547.5986386/1‑94 (MQ=60)
TACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATA < SRR4302547.3837954/94‑1 (MQ=60)
CAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTAC > SRR4302547.3820994/1‑94 (MQ=60)
CAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTAC > SRR4302547.6053974/1‑94 (MQ=60)
CAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTAC > SRR4302547.1469345/1‑94 (MQ=60)
AACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACA > SRR4302547.1751705/1‑94 (MQ=60)
cccccttatcctattgctgtccggaaaccgaacttataaaggaaaaAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGC < SRR4302547.957109/48‑1 (MQ=60)
GCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGT > SRR4302547.5925772/1‑94 (MQ=60)
GCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGT > SRR4302547.2040990/1‑94 (MQ=60)
CTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTC > SRR4302547.4977554/1‑94 (MQ=60)
TTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCT > SRR4302547.239194/1‑94 (MQ=60)
TTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCT > SRR4302547.5672708/1‑94 (MQ=60)
TTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGACGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCT < SRR4302547.2055171/94‑1 (MQ=60)
ATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTT > SRR4302547.2443645/1‑94 (MQ=60)
ATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTT > SRR4302547.1017852/1‑94 (MQ=60)
TCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTT > SRR4302547.4439629/1‑94 (MQ=60)
CTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTG > SRR4302547.1128511/1‑94 (MQ=60)
TATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGC > SRR4302547.2025778/1‑94 (MQ=60)
TTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTT > SRR4302547.929325/1‑94 (MQ=60)
TGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTT > SRR4302547.6238077/1‑94 (MQ=60)
TGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTT < SRR4302547.344076/94‑1 (MQ=60)
GCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTC > SRR4302547.3000106/1‑94 (MQ=60)
CTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCG > SRR4302547.4863247/1‑94 (MQ=60)
TGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCA > SRR4302547.2224996/1‑94 (MQ=60)
TCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAGCC‑ACCTTTTTACTCGAAATGCTAATTACAGCAGTTCTGTTGCTTTCGCAAC > SRR4302547.3641218/1‑94 (MQ=60)
TCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAAC > SRR4302547.772496/1‑94 (MQ=60)
CCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACA > SRR4302547.5767610/1‑94 (MQ=60)
CCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACA > SRR4302547.2473396/1‑94 (MQ=60)
AAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGT > SRR4302547.1352809/1‑94 (MQ=60)
AAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGT > SRR4302547.2614980/1‑94 (MQ=60)
CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTAT > SRR4302547.2875990/1‑94 (MQ=60)
CGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTAT > SRR4302547.6788046/1‑94 (MQ=60)
GACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCA > SRR4302547.1846677/1‑94 (MQ=60)
CATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAAC > SRR4302547.203148/1‑94 (MQ=60)
ATATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACA > SRR4302547.4957272/1‑94 (MQ=60)
TATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAG > SRR4302547.2211433/1‑94 (MQ=60)
ATCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGT > SRR4302547.281620/1‑94 (MQ=60)
TCAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTG > SRR4302547.772034/1‑94 (MQ=60)
CAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGA < SRR4302547.5968480/94‑1 (MQ=60)
CAAGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGA > SRR4302547.2500659/1‑94 (MQ=60)
AGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAG < SRR4302547.4390940/94‑1 (MQ=60)
AGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAG > SRR4302547.3134423/1‑94 (MQ=60)
AGGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAG < SRR4302547.5673726/94‑1 (MQ=60)
AGGTAATAAAAAAGGTCGACGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAG < SRR4302547.5603089/94‑1 (MQ=60)
GGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGC > SRR4302547.3100732/1‑94 (MQ=60)
GGTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGC > SRR4302547.5726590/1‑94 (MQ=60)
GTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCC < SRR4302547.3263597/94‑1 (MQ=60)
GTAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCC > SRR4302547.3309285/1‑94 (MQ=60)
TAATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCG > SRR4302547.5928116/1‑94 (MQ=60)
AATAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGA > SRR4302547.1195700/1‑94 (MQ=60)
TAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAAC < SRR4302547.700413/94‑1 (MQ=60)
TAAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAAC > SRR4302547.26958/1‑94 (MQ=60)
AAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACT > SRR4302547.1403831/1‑94 (MQ=60)
AAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACT < SRR4302547.5146732/94‑1 (MQ=60)
AAAAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACT < SRR4302547.1484905/94‑1 (MQ=60)
AAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCT > SRR4302547.499220/1‑94 (MQ=60)
AAAAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCT < SRR4302547.4528893/94‑1 (MQ=60)
AAGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTC < SRR4302547.1354720/94‑1 (MQ=60)
AGGTCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCA < SRR4302547.1340524/94‑1 (MQ=60)
TCGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAAC > SRR4302547.2192695/1‑94 (MQ=60)
CGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACA < SRR4302547.3012471/94‑1 (MQ=60)
CGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACA > SRR4302547.3894457/1‑94 (MQ=60)
CGCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACA < SRR4302547.1022917/94‑1 (MQ=60)
GCCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACAG > SRR4302547.3110765/1‑94 (MQ=60)
CCGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACAGC > SRR4302547.6239062/1‑94 (MQ=60)
CGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACAGCA > SRR4302547.1464427/1‑94 (MQ=60)
CGAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACAGCA > SRR4302547.6036443/1‑94 (MQ=60)
GAAG‑CGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACAGCAG > SRR4302547.6279947/1‑94 (MQ=60)
G‑ACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACAGCAGCTCTG > SRR4302547.886375/1‑94 (MQ=60)
G‑ACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACAGCAGCTCTG > SRR4302547.4733882/1‑94 (MQ=60)
|
TTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAG‑C‑ACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACAGCAGCTCTG > NC_000913/3077547‑3077733
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
