Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,374,875	T→G	T61P (ACC→CCC)	sspA ←	stringent starvation protein A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,374,875	0	T	G	100.0%	901.0 / NA	248	T61P (ACC→CCC)	sspA	stringent starvation protein A
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (127/121); total (127/121)

Only 100 of 255 total aligned reads displayed.

CAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCT  >  NC_000913/3374785‑3374964

 aGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCgg                                                                                        <  2:2492046/93‑1 (MQ=255)

 aGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCgg                                                                                        <  2:1364474/93‑1 (MQ=255)

  ggCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGa                                                                                       >  1:4927929/1‑93 (MQ=255)

   gCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGaa                                                                                      <  2:3323021/93‑1 (MQ=255)

   gCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGaa                                                                                      <  2:2298986/93‑1 (MQ=255)

    cATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAAc                                                                                     <  1:2426687/93‑1 (MQ=255)

      tCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGc                                                                                   <  2:4871824/93‑1 (MQ=255)

        aGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGctc                                                                                 >  2:6421467/1‑93 (MQ=255)

         gTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGctct                                                                                <  2:3051526/93‑1 (MQ=255)

          tGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTg                                                                               >  1:6609681/1‑93 (MQ=255)

           ggCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGa                                                                              >  1:409397/1‑93 (MQ=255)

           ggCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGa                                                                              <  2:2978262/93‑1 (MQ=255)

            gCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGAt                                                                             >  2:4290031/1‑93 (MQ=255)

            gCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGAt                                                                             >  1:5907894/1‑93 (MQ=255)

             cGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGAtt                                                                            <  1:4621378/93‑1 (MQ=255)

               gATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCg                                                                          >  2:4996706/1‑93 (MQ=255)

                aTGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCgg                                                                         >  1:5120038/1‑93 (MQ=255)

                 tacGGGAAACGCTCATCCAGATATTCCATAATGGTGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCggg                                                                        >  2:3993932/3‑93 (MQ=255)

                 tGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCggg                                                                        <  1:3365097/93‑1 (MQ=255)

                  gCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCCCAGGGTCAGCTCACGATCTCCCAGGGGCGGAACGCTCTGATTCGCGt                                                                       >  2:1507972/1‑93 (MQ=255)

                  gCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGt                                                                       <  1:6564068/93‑1 (MQ=255)

                   cGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGtt                                                                      <  2:3574874/93‑1 (MQ=255)

                   cGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGtt                                                                      <  1:4516303/93‑1 (MQ=255)

                     ggAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGa                                                                    <  2:3800778/93‑1 (MQ=255)

                     ggAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGa                                                                    <  2:1244751/93‑1 (MQ=255)

                      gAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAg                                                                   >  1:5476214/1‑93 (MQ=255)

                      gAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAg                                                                   <  1:1886861/93‑1 (MQ=255)

                      gAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAg                                                                   <  2:5715482/93‑1 (MQ=255)

                      gAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAg                                                                   >  1:1098346/1‑93 (MQ=255)

                       aaaCGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAgg                                                                  <  2:1605049/93‑1 (MQ=255)

                        aaCGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGGTGAGGt                                                                 >  1:5964344/1‑93 (MQ=255)

                         aCGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTc                                                                <  2:1705053/93‑1 (MQ=255)

                         aCGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTc                                                                >  2:5289279/1‑93 (MQ=255)

                         aCGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTc                                                                >  2:5526976/1‑93 (MQ=255)

                           gCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCaa                                                              >  1:2631141/1‑93 (MQ=255)

                             tCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATc                                                            >  2:1764878/1‑93 (MQ=255)

                             tCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATc                                                            <  2:4742899/93‑1 (MQ=255)

                              cATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCa                                                           >  1:882677/1‑93 (MQ=255)

                               aTCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAg                                                          <  2:3160682/93‑1 (MQ=255)

                                tCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGa                                                         >  1:3182645/1‑93 (MQ=255)

                                 ccAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGAt                                                        >  1:6456597/1‑93 (MQ=255)

                                 ccAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGAt                                                        >  1:4939062/1‑93 (MQ=255)

                                 ccAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAACTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGAt                                                        >  1:213535/1‑93 (MQ=255)

                                  cAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATc                                                       >  1:3567832/1‑93 (MQ=255)

                                  cAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATc                                                       <  2:6290800/93‑1 (MQ=255)

                                   aGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATcc                                                      <  1:5703470/93‑1 (MQ=255)

                                    gATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCt                                                     >  2:6607691/1‑93 (MQ=255)

                                    gATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCt                                                     <  2:5342164/93‑1 (MQ=255)

                                    gATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCt                                                     >  1:6350771/1‑93 (MQ=255)

                                     atatTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTg                                                    <  2:5825709/93‑1 (MQ=255)

                                      tatTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGa                                                   <  2:6006232/93‑1 (MQ=255)

                                      tatTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGa                                                   >  1:1580896/1‑93 (MQ=255)

                                      tatTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGa                                                   >  1:2268039/1‑93 (MQ=255)

                                      tatTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGa                                                   <  2:718023/93‑1 (MQ=255)

                                      tatTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGa                                                   <  1:55246/93‑1 (MQ=255)

                                        ttCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAgg                                                 >  2:2213477/1‑93 (MQ=255)

                                         tCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGc                                                <  2:5219058/93‑1 (MQ=255)

                                         tCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGc                                                >  2:6113280/1‑93 (MQ=255)

                                          ccATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCg                                               >  2:1116609/1‑93 (MQ=255)

                                            aTAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGa                                             >  1:3228408/1‑93 (MQ=255)

                                             tAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGAt                                            >  1:1909326/1‑93 (MQ=255)

                                                tgatgCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGt                                         <  1:5055120/93‑1 (MQ=255)

                                                 gatgCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTc                                        <  1:4847234/93‑1 (MQ=255)

                                                 gatgCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTc                                        >  2:2263872/1‑93 (MQ=255)

                                                  atgCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTcc                                       >  2:3632038/1‑93 (MQ=255)

                                                   tgCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCt                                      <  1:3748860/93‑1 (MQ=255)

                                                     cGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCttt                                    >  1:4284890/1‑93 (MQ=255)

                                                     cGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCttt                                    <  2:6235913/93‑1 (MQ=255)

                                                     cGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCttt                                    <  1:467135/93‑1 (MQ=255)

                                                      gagaTTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCtttt                                   >  2:1781457/1‑93 (MQ=255)

                                                        gaTTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTcc                                 >  1:6077325/1‑93 (MQ=255)

                                                         aTTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCa                                <  2:2508088/93‑1 (MQ=255)

                                                          ttCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCAc                               <  1:3667631/93‑1 (MQ=255)

                                                             ccACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACgtg                            <  2:257404/93‑1 (MQ=255)

                                                              cacaGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACgtgt                           >  1:3351564/1‑93 (MQ=255)

                                                              cacaGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACgtgt                           <  1:249979/93‑1 (MQ=255)

                                                              cacaGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACgtgt                           >  2:5419772/1‑93 (MQ=255)

                                                                caGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTc                         >  2:404168/1‑93 (MQ=255)

                                                                caGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTc                         <  2:1155272/93‑1 (MQ=255)

                                                                  gggTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGa                       <  1:2780014/93‑1 (MQ=255)

                                                                     tCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGAtct                    <  1:3908186/93‑1 (MQ=255)

                                                                     tCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGAtct                    <  1:1310053/93‑1 (MQ=255)

                                                                      cAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGAtctc                   <  1:5261082/93‑1 (MQ=255)

                                                                        gCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGa                 >  2:2091302/1‑93 (MQ=255)

                                                                        gCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATATCGa                 >  1:5617464/1‑93 (MQ=255)

                                                                         cTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGaa                >  2:3892930/1‑93 (MQ=255)

                                                                          tCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGaaa               >  1:2968567/1‑93 (MQ=255)

                                                                           cACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAAc              >  1:3034568/1‑93 (MQ=255)

                                                                            aCGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACt             <  1:5715474/93‑1 (MQ=255)

                                                                            aCGATCCAACAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACt             <  1:5780185/93‑1 (MQ=255)

                                                                             cGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACtt            >  2:4339329/1‑93 (MQ=255)

                                                                              gATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTa           <  2:6330645/93‑1 (MQ=255)

                                                                                tCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTaca         >  2:792886/1‑93 (MQ=255)

                                                                                 ccaccaGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTacac        <  1:1028263/93‑1 (MQ=255)

                                                                                    ccaGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCtt     <  1:5331696/93‑1 (MQ=255)

                                                                                      aGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTtc   >  1:204751/1‑93 (MQ=255)

                                                                                      aGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTtc   >  2:2711976/1‑93 (MQ=255)

                                                                                      aGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTtc   >  1:4765261/1‑93 (MQ=255)

                                                                                       ggggCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTtct  >  2:3366081/1‑93 (MQ=255)

                                                                                       ggggCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTtct  >  1:4400951/1‑93 (MQ=255)

CAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCT  >  NC_000913/3374785‑3374964

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC  >  NC_000913/3374782‑3374968

AAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGG                                                                                               >  SRR4302547.1831803/1‑94 (MQ=60)

AAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGG                                                                                               <  SRR4302547.2883471/94‑1 (MQ=60)

 AACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGC                                                                                              <  SRR4302547.254600/94‑1 (MQ=60)

  ACAGGCATCAGTGGCGGAAGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCG                                                                                             <  SRR4302547.4838620/94‑1 (MQ=60)

   CAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGG                                                                                            >  SRR4302547.5330394/1‑94 (MQ=60)

   CAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGG                                                                                            <  SRR4302547.5631274/94‑1 (MQ=60)

    AGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGA                                                                                           >  SRR4302547.5030004/1‑94 (MQ=60)

       CATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACG                                                                                        <  SRR4302547.4724945/94‑1 (MQ=60)

       CATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACG                                                                                        >  SRR4302547.3141652/1‑94 (MQ=60)

       CATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACG                                                                                        >  SRR4302547.4966181/1‑94 (MQ=60)

       CATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACG                                                                                        >  SRR4302547.4222652/1‑94 (MQ=60)

       CATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACG                                                                                        <  SRR4302547.2475811/94‑1 (MQ=60)

        ATCAGTGGCGGATGCGTGAAACGCTCAGCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGC                                                                                       <  SRR4302547.3843820/94‑1 (MQ=60)

        ATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGC                                                                                       >  SRR4302547.5085128/1‑94 (MQ=60)

         TCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCT                                                                                      <  SRR4302547.480215/94‑1 (MQ=60)

         TCAGAGGCGGAGGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTTACGATCCACCAGGGGCGGAACGCT                                                                                      >  SRR4302547.4384711/1‑94 (MQ=60)

          CAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTC                                                                                     >  SRR4302547.4974564/1‑94 (MQ=60)

           AGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCT                                                                                    <  SRR4302547.3844216/94‑1 (MQ=60)

            GTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTG                                                                                   >  SRR4302547.6747266/1‑94 (MQ=60)

             TGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGA                                                                                  >  SRR4302547.416987/1‑94 (MQ=60)

             TGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGA                                                                                  >  SRR4302547.4764222/1‑94 (MQ=60)

              GGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGAT                                                                                 >  SRR4302547.5409931/1‑94 (MQ=60)

              GGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGAT                                                                                 >  SRR4302547.6030241/1‑94 (MQ=60)

                CGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTC                                                                               <  SRR4302547.4717075/94‑1 (MQ=60)

                CGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTC                                                                               <  SRR4302547.5128932/94‑1 (MQ=60)

                CGGATGCGGGAAACGATCATCCAGATATTCCATAATGATGCGATATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTC                                                                               <  SRR4302547.657575/94‑1 (MQ=60)

                 GGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCG                                                                              <  SRR4302547.5857310/94‑1 (MQ=60)

                 GGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCG                                                                              >  SRR4302547.6361602/1‑94 (MQ=60)

                  GATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGG                                                                             <  SRR4302547.5767785/94‑1 (MQ=60)

                  GATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGG                                                                             >  SRR4302547.5225521/1‑94 (MQ=60)

                  GATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGG                                                                             <  SRR4302547.6032191/94‑1 (MQ=60)

                    TGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGT                                                                           <  SRR4302547.3433434/94‑1 (MQ=60)

                    TGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGT                                                                           <  SRR4302547.2559458/94‑1 (MQ=60)

                    TGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGT                                                                           <  SRR4302547.4698581/94‑1 (MQ=60)

                     GCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTT                                                                          <  SRR4302547.6700742/94‑1 (MQ=60)

                      CGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTG                                                                         <  SRR4302547.4609611/94‑1 (MQ=60)

                       GGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGA                                                                        >  SRR4302547.4883407/1‑94 (MQ=60)

                       GGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGA                                                                        >  SRR4302547.5472478/1‑94 (MQ=60)

                        GGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAG                                                                       >  SRR4302547.1120400/1‑94 (MQ=60)

                        GGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAG                                                                       >  SRR4302547.5589321/1‑94 (MQ=60)

                         GAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGG                                                                      <  SRR4302547.1924142/94‑1 (MQ=60)

                          AAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGGTGAGGT                                                                     >  SRR4302547.6088037/1‑94 (MQ=60)

                            ACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCA                                                                   <  SRR4302547.1798265/94‑1 (MQ=60)

                             CGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAA                                                                  >  SRR4302547.2684129/1‑94 (MQ=60)

                               CTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATC                                                                >  SRR4302547.2342962/1‑94 (MQ=60)

                                TCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCA                                                               <  SRR4302547.1330107/94‑1 (MQ=60)

                                TCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCA                                                               >  SRR4302547.6038111/1‑94 (MQ=60)

                                TCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCA                                                               >  SRR4302547.899642/1‑94 (MQ=60)

                                  ATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGA                                                             >  SRR4302547.3246068/1‑94 (MQ=60)

                                  ATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGA                                                             >  SRR4302547.4096188/1‑94 (MQ=60)

                                   TCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGAT                                                            <  SRR4302547.5207735/94‑1 (MQ=60)

                                   TCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGAT                                                            >  SRR4302547.6591076/1‑94 (MQ=60)

                                   TCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGAT                                                            >  SRR4302547.5041359/1‑94 (MQ=60)

                                   TCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAACTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGAT                                                            >  SRR4302547.217564/1‑94 (MQ=60)

                                    CCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATC                                                           >  SRR4302547.3640624/1‑94 (MQ=60)

                                     CAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCC                                                          <  SRR4302547.6610573/94‑1 (MQ=60)

                                      AGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCT                                                         <  SRR4302547.5821281/94‑1 (MQ=60)

                                      AGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCT                                                         >  SRR4302547.6483108/1‑94 (MQ=60)

                                       GATATTCTATAATGATGCGAGATTCCCACAGGGTCAGCGCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTG                                                        <  SRR4302547.2755837/94‑1 (MQ=60)

                                        ATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGA                                                       >  SRR4302547.2313900/1‑94 (MQ=60)

                                        ATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGA                                                       <  SRR4302547.2022523/94‑1 (MQ=60)

                                        ATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGA                                                       >  SRR4302547.1612358/1‑94 (MQ=60)

                                         TATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAG                                                      <  SRR4302547.56283/94‑1 (MQ=60)

                                          ATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGG                                                     >  SRR4302547.5350379/1‑94 (MQ=60)

                                           TTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGC                                                    <  SRR4302547.5726828/94‑1 (MQ=60)

                                            TCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCG                                                   >  SRR4302547.3382246/1‑94 (MQ=60)

                                            TCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCG                                                   >  SRR4302547.5769715/1‑94 (MQ=60)

                                            TCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCG                                                   <  SRR4302547.3247703/94‑1 (MQ=60)

                                            TCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCG                                                   >  SRR4302547.3795591/1‑94 (MQ=60)

                                             CCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGG                                                  >  SRR4302547.1392718/1‑94 (MQ=60)

                                             CCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCC‑GAGGCGGG                                                 >  SRR4302547.6574738/1‑94 (MQ=60)

                                              CATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGA                                                 >  SRR4302547.3292843/1‑94 (MQ=60)

                                               ATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGAT                                                >  SRR4302547.1947111/1‑94 (MQ=60)

                                               AGAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGAT                                                <  SRR4302547.435744/94‑1 (MQ=60)

                                                   TGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTC                                            <  SRR4302547.5159468/94‑1 (MQ=60)

                                                   TGATGCGAGATTCCCACAGGGACAGCGAAGGATCCACCAGGGGCGGAACGCTCTGATCCGAGCTGAGGACAATCAGATCGTGAGGCGGATTGAC                                            >  SRR4302547.845114/1‑94 (MQ=38)

                                                    GATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCC                                           <  SRR4302547.4947688/94‑1 (MQ=60)

                                                     ATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGGCAATCAGATCCTGAGGCGGATTGTCCT                                          >  SRR4302547.4554796/1‑94 (MQ=60)

                                                      TGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTT                                         >  SRR4302547.5713347/1‑94 (MQ=60)

                                                      TGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTT                                         >  SRR4302547.3389547/1‑94 (MQ=60)

                                                      TGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTT                                         <  SRR4302547.5946310/94‑1 (MQ=60)

                                                      TGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTT                                         <  SRR4302547.3825383/94‑1 (MQ=60)

                                                       GCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTT                                        >  SRR4302547.5587494/1‑94 (MQ=60)

                                                       GCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTT                                        >  SRR4302547.4372941/1‑94 (MQ=60)

                                                        CGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTT                                       <  SRR4302547.475741/94‑1 (MQ=60)

                                                         GAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTC                                      >  SRR4302547.3580473/1‑94 (MQ=60)

                                                          AGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCC                                     >  SRR4302547.6203390/1‑94 (MQ=60)

                                                          AGATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCC                                     <  SRR4302547.1071069/94‑1 (MQ=60)

                                                           GATTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCA                                    >  SRR4302547.2560385/1‑94 (MQ=60)

                                                             TTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACG                                  <  SRR4302547.5863288/94‑1 (MQ=60)

                                                             TTCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACG                                  <  SRR4302547.3742435/94‑1 (MQ=60)

                                                              TCCCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGT                                 >  SRR4302547.218352/1‑94 (MQ=60)

                                                                CCACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGT                               >  SRR4302547.3419529/1‑94 (MQ=60)

                                                                 CACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTT                              <  SRR4302547.254660/94‑1 (MQ=60)

                                                                  ACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTC                             >  SRR4302547.3073547/1‑94 (MQ=60)

                                                                  ACAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTC                             <  SRR4302547.3424647/94‑1 (MQ=60)

                                                                   CAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCG                            <  SRR4302547.4396256/94‑1 (MQ=60)

                                                                   CAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCG                            >  SRR4302547.3022086/1‑94 (MQ=60)

                                                                   CAGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCG                            >  SRR4302547.6715577/1‑94 (MQ=60)

                                                                    AGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGA                           >  SRR4302547.6236095/1‑94 (MQ=60)

                                                                    AGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGA                           <  SRR4302547.5823470/94‑1 (MQ=60)

                                                                    AGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGA                           <  SRR4302547.1929321/94‑1 (MQ=60)

                                                                     GGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGAT                          <  SRR4302547.2835711/94‑1 (MQ=60)

                                                                     GGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGAT                          >  SRR4302547.2540706/1‑94 (MQ=60)

                                                                      GGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATC                         >  SRR4302547.3662879/1‑94 (MQ=60)

                                                                       GTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCT                        >  SRR4302547.2872731/1‑94 (MQ=60)

                                                                       GTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCT                        <  SRR4302547.5039765/94‑1 (MQ=60)

                                                                       GTCAGCTCACGATCCACCAGGGGCGGAACGCCCTGATTCGGGTTGAGGTCAAGCAGATCCTGCGGCGGATTGTTCTTTTCCAgctttccgattt                        >  SRR4302547.210258/1‑82 (MQ=60)

                                                                        TCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTC                       <  SRR4302547.1336402/94‑1 (MQ=60)

                                                                        TCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTC                       <  SRR4302547.3987665/94‑1 (MQ=60)

                                                                         CAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCG                      <  SRR4302547.5369426/94‑1 (MQ=60)

                                                                          AGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATATCGA                     >  SRR4302547.5733390/1‑94 (MQ=60)

                                                                           GCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAA                    >  SRR4302547.1973118/1‑94 (MQ=60)

                                                                            CTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAC                   >  SRR4302547.316298/1‑94 (MQ=60)

                                                                            CTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAA                   >  SRR4302547.3027655/1‑94 (MQ=60)

                                                                             TCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAAC                  >  SRR4302547.4914246/1‑94 (MQ=60)

                                                                             TCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAAC                  >  SRR4302547.3094929/1‑94 (MQ=60)

                                                                               ACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTT                <  SRR4302547.5833514/94‑1 (MQ=60)

                                                                               ACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTT                <  SRR4302547.2505139/94‑1 (MQ=60)

                                                                               ACGATCCAACAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTT                <  SRR4302547.5899742/94‑1 (MQ=60)

                                                                                CGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTA               <  SRR4302547.3691032/94‑1 (MQ=60)

                                                                                  ATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACA             >  SRR4302547.849819/1‑94 (MQ=60)

                                                                                  ATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACA             <  SRR4302547.1165687/94‑1 (MQ=60)

                                                                                    CCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACC           <  SRR4302547.1048461/94‑1 (MQ=60)

                                                                                    CCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACC           <  SRR4302547.1759000/94‑1 (MQ=60)

                                                                                      CCCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTT         <  SRR4302547.2227784/94‑1 (MQ=60)

                                                                                      ACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTT         <  SRR4302547.4608019/94‑1 (MQ=60)

                                                                                       CCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTT        <  SRR4302547.5441584/94‑1 (MQ=60)

                                                                                       CCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTT        <  SRR4302547.804375/94‑1 (MQ=60)

                                                                                        CAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTC       >  SRR4302547.3440834/1‑94 (MQ=60)

                                                                                        CAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTC       >  SRR4302547.208582/1‑94 (MQ=60)

                                                                                        CAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTC       >  SRR4302547.4863975/1‑94 (MQ=60)

                                                                                         AGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCT      >  SRR4302547.973869/1‑94 (MQ=60)

                                                                                         AGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCT      <  SRR4302547.614747/94‑1 (MQ=60)

                                                                                         AGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCT      >  SRR4302547.4491576/1‑94 (MQ=60)

                                                                                         AGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCT      <  SRR4302547.2100989/94‑1 (MQ=60)

                                                                                          GGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTC     >  SRR4302547.346659/1‑94 (MQ=60)

                                                                                            GGCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAG   <  SRR4302547.1597827/94‑1 (MQ=60)

                                                                                             GCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC  >  SRR4302547.6331258/1‑94 (MQ=60)

                                                                                             GCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC  >  SRR4302547.629046/1‑94 (MQ=60)

                                                                                             GCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC  >  SRR4302547.5116266/1‑94 (MQ=60)

                                                                                             GCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTAAACCTTTCTCAGC  >  SRR4302547.3103816/1‑94 (MQ=60)

AAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC  >  NC_000913/3374782‑3374968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`