Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,582,212 |
T→C |
intergenic (+22/‑178) |
b4547 → / → yrhB |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,582,212 | 0 | T | C | 85.4%
| 321.1
/ 44.4
| 123 | intergenic (+22/‑178) | b4547/yrhB | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (3/15); new base C (17/88); total (20/103) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-01 |
Only 100 of 127 total aligned reads displayed.
CTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTTAATAATA > NC_000913/3582121‑3582304
|
cTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGtt < 1:2571910/93‑1 (MQ=255)
tATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTc < 2:5482261/93‑1 (MQ=255)
atgatgATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGctct < 2:6572445/93‑1 (MQ=255)
atgatgATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCt < 1:850016/93‑1 (MQ=255)
tgatgaTTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTg > 1:1256792/1‑93 (MQ=255)
tgatgaTTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTg < 2:3493916/93‑1 (MQ=255)
atgatTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGaa > 2:201630/1‑93 (MQ=255)
gatTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGaaaa < 1:2086303/93‑1 (MQ=255)
atTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGaaaaa < 2:2915467/93‑1 (MQ=255)
atTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGaaaaa > 1:1904324/1‑93 (MQ=255)
atTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGaaaaa < 2:4267981/93‑1 (MQ=255)
atTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGaaaaa < 2:1850285/93‑1 (MQ=255)
atTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGaaaaa < 2:1699115/93‑1 (MQ=255)
ttttAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAg > 2:1193540/1‑93 (MQ=255)
ttttAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAg < 2:5846068/93‑1 (MQ=255)
ttttAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAg < 1:5906970/93‑1 (MQ=255)
tAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGaaa < 1:5748224/93‑1 (MQ=255)
tAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGaaa > 2:6609099/1‑93 (MQ=255)
tAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGaaa < 2:3217137/93‑1 (MQ=255)
tAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGaaa < 1:3628745/93‑1 (MQ=255)
aaTGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAAt > 2:2702069/1‑93 (MQ=255)
aTGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATc < 1:6089266/93‑1 (MQ=255)
tGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCa < 1:1464305/93‑1 (MQ=255)
tGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCa < 1:2158212/93‑1 (MQ=255)
gACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCAt < 2:3857338/93‑1 (MQ=255)
gACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCAt < 1:5857355/93‑1 (MQ=255)
gACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCAt < 2:3113842/93‑1 (MQ=255)
gACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAACCAt < 2:649843/93‑1 (MQ=255)
cATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATaa < 2:2472989/93‑1 (MQ=255)
cATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATaa < 2:3057479/93‑1 (MQ=255)
tGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAatat > 2:6218916/1‑93 (MQ=255)
gATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATAtt > 2:1747469/1‑93 (MQ=255)
atttatttAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTa > 1:3840570/1‑93 (MQ=255)
atttatttAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTa < 2:2872651/93‑1 (MQ=255)
tttatttaGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAg < 1:3393340/93‑1 (MQ=255)
tttaGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGa < 1:6243219/93‑1 (MQ=255)
tttaGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGa < 1:1070705/93‑1 (MQ=255)
tttaGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGa < 1:4806010/93‑1 (MQ=255)
tttaGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGa < 1:436285/93‑1 (MQ=255)
taGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATa > 2:6541934/1‑93 (MQ=255)
taGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATa < 1:3279947/93‑1 (MQ=255)
taGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATa < 2:1367934/93‑1 (MQ=255)
aGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATGTTAGCAGATAc < 2:4028004/93‑1 (MQ=255)
aGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATAc < 1:6012873/93‑1 (MQ=255)
aGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATAc < 2:3707014/93‑1 (MQ=255)
gAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACt < 1:856308/93‑1 (MQ=255)
aaTTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACtt < 2:3923050/93‑1 (MQ=255)
aTTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTa < 2:408280/93‑1 (MQ=255)
ttACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTAttt > 2:876176/1‑93 (MQ=255)
tACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCATTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTc < 1:6555304/93‑1 (MQ=255)
aCCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCg < 2:4057595/93‑1 (MQ=255)
aCCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCg < 2:4301001/93‑1 (MQ=255)
aCCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCg > 2:3454393/1‑93 (MQ=255)
cccGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGt < 2:2531796/93‑1 (MQ=255)
cccGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGt < 1:2783818/93‑1 (MQ=255)
cccGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGt < 1:5271830/93‑1 (MQ=255)
cccGAATCATAAGATTCTGATAACCTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGt < 2:2169440/93‑1 (MQ=255)
cGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGa < 2:2980903/93‑1 (MQ=255)
aaTCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACt > 2:3845096/1‑93 (MQ=255)
aaTCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACt > 2:3845095/1‑93 (MQ=255)
aTCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACta < 2:329125/93‑1 (MQ=255)
aTCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACta < 1:837137/93‑1 (MQ=255)
tCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACtat < 2:2198802/93‑1 (MQ=255)
tCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACtat < 2:4843637/93‑1 (MQ=255)
aTAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTatat < 1:3944847/93‑1 (MQ=255)
aTAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTatat < 2:1402514/93‑1 (MQ=255)
tAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATc < 1:6156483/93‑1 (MQ=255)
aTTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTAt < 1:349114/93‑1 (MQ=255)
ttCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATc < 2:906490/93‑1 (MQ=255)
tCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATcc < 1:428596/93‑1 (MQ=255)
gATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGAt < 1:3589480/93‑1 (MQ=255)
atatCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATg < 1:3589722/93‑1 (MQ=255)
tCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAAc < 1:5392877/93‑1 (MQ=255)
cTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACt < 1:1215265/93‑1 (MQ=255)
cTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACt < 1:1733796/93‑1 (MQ=255)
tAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACttt < 1:1416118/93‑1 (MQ=255)
aaTAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACttttt < 2:5543640/93‑1 (MQ=255)
aTAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACtttttt < 2:854373/93‑1 (MQ=255)
aTAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACtttttt < 1:1427387/93‑1 (MQ=255)
aaGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCa < 1:1302512/93‑1 (MQ=255)
aGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCaa < 1:2236563/93‑1 (MQ=255)
gAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCaaa < 2:3575472/93‑1 (MQ=255)
gAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCaaa < 1:2709089/93‑1 (MQ=255)
aaaaaCCCCGTTCGACACTCTGAAAAAGAAATCATAAAAGAGTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCaaa < 1:6619176/92‑1 (MQ=255)
aaaaTCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCaaaa < 2:3027686/93‑1 (MQ=255)
aaaaTCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCaaaa < 2:4503153/93‑1 (MQ=255)
aaaTCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAAc < 1:6218916/93‑1 (MQ=255)
aaTCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAAcc < 1:2324407/93‑1 (MQ=255)
aaTCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAAcc < 2:2153469/93‑1 (MQ=255)
aaTCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAAcc < 1:3180286/93‑1 (MQ=255)
aTCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCa < 1:2674937/93‑1 (MQ=255)
ccGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCa < 2:5109234/93‑1 (MQ=255)
gTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCAtt < 2:4904898/93‑1 (MQ=255)
ttCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCAttt < 2:4218270/93‑1 (MQ=255)
tCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTta < 1:5385692/93‑1 (MQ=255)
tCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTta < 1:5501723/93‑1 (MQ=255)
cGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGATCTTTTTTCAAAACCAGCATTtaa < 2:2740057/93‑1 (MQ=255)
gACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTtaat > 1:694660/1‑93 (MQ=255)
aCGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTtaata < 1:2061404/93‑1 (MQ=255)
ttCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTTAataata < 1:236374/93‑1 (MQ=255)
|
CTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTTAATAATA > NC_000913/3582121‑3582304
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTTAATAATAT > NC_000913/3582121‑3582305
|
CTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTC < SRR4302547.2623837/94‑1 (MQ=60)
CTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTC < SRR4302547.5686334/94‑1 (MQ=60)
CTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTC < SRR4302547.2665468/94‑1 (MQ=60)
ATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTG < SRR4302547.866250/94‑1 (MQ=60)
ATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTG > SRR4302547.1282133/1‑94 (MQ=60)
ATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTG < SRR4302547.2525838/94‑1 (MQ=60)
GATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAA > SRR4302547.1942000/1‑94 (MQ=60)
GATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAA < SRR4302547.2127912/94‑1 (MQ=60)
TTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGA < SRR4302547.6029296/94‑1 (MQ=60)
TAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAAT < SRR4302547.5867046/94‑1 (MQ=60)
TAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAAT < SRR4302547.357558/94‑1 (MQ=60)
TAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAAT < SRR4302547.3702768/94‑1 (MQ=60)
AATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATC > SRR4302547.6303405/1‑94 (MQ=60)
ATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCA < SRR4302547.176736/94‑1 (MQ=60)
ATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCA < SRR4302547.6215578/94‑1 (MQ=60)
TGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCAT < SRR4302547.1493558/94‑1 (MQ=60)
TGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCAT < SRR4302547.2201344/94‑1 (MQ=60)
GACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATA < SRR4302547.5978550/94‑1 (MQ=60)
ACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAA < SRR4302547.5545177/94‑1 (MQ=60)
GATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTA > SRR4302547.3918787/1‑94 (MQ=60)
TTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGC < SRR4302547.3462382/94‑1 (MQ=60)
TTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGAT < SRR4302547.4905612/94‑1 (MQ=60)
TTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGAT < SRR4302547.444390/94‑1 (MQ=60)
TTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGAT < SRR4302547.6372912/94‑1 (MQ=60)
TTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGAT < SRR4302547.1092032/94‑1 (MQ=60)
TAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATAC < SRR4302547.3345699/94‑1 (MQ=60)
AGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACT < SRR4302547.6137668/94‑1 (MQ=60)
AGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACT < SRR4302547.1443063/94‑1 (MQ=60)
AGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACT > SRR4302547.2878143/1‑94 (MQ=60)
GAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTT < SRR4302547.872667/94‑1 (MQ=60)
ATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTAT < SRR4302547.4614036/94‑1 (MQ=60)
TACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCATTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCG < SRR4302547.6691806/94‑1 (MQ=60)
CCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTG < SRR4302547.2839581/94‑1 (MQ=60)
CCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTG < SRR4302547.5380471/94‑1 (MQ=60)
CGAATCATAAGATTCTGATATCTTAAATAAGAAAACCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGAC < SRR4302547.6040449/94‑1 (MQ=60)
ATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTAT < SRR4302547.853116/94‑1 (MQ=60)
ATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATC < SRR4302547.4025082/94‑1 (MQ=60)
TAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCT < SRR4302547.6284250/94‑1 (MQ=60)
ATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATC < SRR4302547.355598/94‑1 (MQ=60)
TCTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCG < SRR4302547.436534/94‑1 (MQ=60)
CTGATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGA < SRR4302547.2227438/94‑1 (MQ=60)
GATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATG < SRR4302547.6768187/94‑1 (MQ=60)
GATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATG < SRR4302547.3662701/94‑1 (MQ=60)
ATATCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGA < SRR4302547.3662946/94‑1 (MQ=60)
TCTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACT < SRR4302547.5504273/94‑1 (MQ=60)
CTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTT < SRR4302547.1239782/94‑1 (MQ=60)
CTTAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTT < SRR4302547.1767852/94‑1 (MQ=60)
TAAATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTT < SRR4302547.1444460/94‑1 (MQ=60)
ATAAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTC < SRR4302547.1455945/94‑1 (MQ=60)
AAGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAA < SRR4302547.1328716/94‑1 (MQ=60)
AGAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAA < SRR4302547.2281664/94‑1 (MQ=60)
GAAAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAA < SRR4302547.2763479/94‑1 (MQ=60)
AAAAACCCCGTTCGACACTCTGAAAAAGAAATCATAAAAGAGTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAA < SRR4302547.6756940/94‑1 (MQ=60)
AAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACC < SRR4302547.3881344/94‑1 (MQ=60)
AAATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACC < SRR4302547.6348067/94‑1 (MQ=60)
AATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCA < SRR4302547.3243671/94‑1 (MQ=60)
AATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCA < SRR4302547.2371518/94‑1 (MQ=60)
ATCCCGTTCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAG < SRR4302547.2728664/94‑1 (MQ=60)
TCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTTAA < SRR4302547.5496902/94‑1 (MQ=60)
TCGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTTAA < SRR4302547.5615323/94‑1 (MQ=60)
CGACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTTAAT > SRR4302547.707490/1‑94 (MQ=60)
ACGCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTTAATAA < SRR4302547.2102538/94‑1 (MQ=60)
GCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCTGCATTTAATAATA < SRR4302547.5418604/94‑1 (MQ=60)
GCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTTAATAATA < SRR4302547.1855940/94‑1 (MQ=60)
GCTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTTAATAATA < SRR4302547.1217627/94‑1 (MQ=60)
TTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTTAATAATAT < SRR4302547.240813/94‑1 (MQ=60)
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CTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTTAATAATAT > NC_000913/3582121‑3582305
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
