Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,584,676	A→G	S35G (AGC→GGC)	yhhA →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,584,676	0	A	G	85.4%	637.4 / 92.3	247	S35G (AGC→GGC)	yhhA	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (21/15); new base G (105/105); total (127/120)
Fisher's exact test for biased strand distribution p-value = 3.73e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.36e-01

Only 100 of 269 total aligned reads displayed.

TTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGTTGCA  >  NC_000913/3584584‑3584767

   tGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACccggcc                                                                                          <  1:4289643/93‑1 (MQ=255)

   tGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACACTAACCAGCCGGGGTATCAGATACccggcc                                                                                          >  2:4350515/1‑93 (MQ=255)

    gATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACccggcca                                                                                         >  1:2516295/1‑93 (MQ=255)

     aTTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACccagccag                                                                                        <  1:5558181/93‑1 (MQ=255)

      ttCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCcggccagc                                                                                       <  1:4455970/93‑1 (MQ=255)

      ttCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCcggccagc                                                                                       >  1:2052304/1‑93 (MQ=255)

         ttACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCagcagc                                                                                    >  1:3185201/1‑93 (MQ=255)

          tACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCg                                                                                   <  2:4185427/93‑1 (MQ=255)

            cGGCCCTCCGGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGa                                                                                 <  1:3077270/93‑1 (MQ=255)

            cGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGa                                                                                 <  2:1623378/93‑1 (MQ=255)

             ggCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGAt                                                                                >  2:4657577/1‑93 (MQ=255)

              gcccTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATg                                                                               <  2:1992968/90‑1 (MQ=255)

              gCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATGCCCGGCCAGCAGCGGATg                                                                               <  2:81814/93‑1 (MQ=255)

              gCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATg                                                                               >  2:4571187/1‑93 (MQ=255)

                ccTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATCCTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCa                                                                             <  2:477954/92‑1 (MQ=255)

                 cTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCaa                                                                            >  2:3250066/1‑93 (MQ=255)

                 cTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCaa                                                                            >  1:4953624/1‑93 (MQ=255)

                 cTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCaa                                                                            >  1:4825385/1‑93 (MQ=255)

                 cTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCaa                                                                            >  1:3531358/1‑93 (MQ=255)

                  tCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCaaa                                                                           >  2:4397007/1‑93 (MQ=255)

                  tCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCaaa                                                                           >  2:2422602/1‑93 (MQ=255)

                   ccTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAAAAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAAc                                                                          <  1:3397680/93‑1 (MQ=255)

                      gCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCa                                                                       >  1:124200/1‑93 (MQ=255)

                       ccGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAg                                                                      <  1:175928/93‑1 (MQ=255)

                       ccGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGCATCAGATACCCGGCCAGCAGCGGATGCAAACCCAg                                                                      >  2:477301/1‑93 (MQ=255)

                        cGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGa                                                                     <  1:3737925/93‑1 (MQ=255)

                        cGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGa                                                                     <  1:4095430/93‑1 (MQ=255)

                        cGTTTGTCGGCTTTGCACAGCCAATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGa                                                                     <  1:1427263/93‑1 (MQ=255)

                         gTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGAt                                                                    <  1:1069918/93‑1 (MQ=255)

                          tttGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATg                                                                   >  1:4680359/1‑93 (MQ=255)

                          tttGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATg                                                                   <  2:5030584/93‑1 (MQ=255)

                          tttGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATg                                                                   >  1:1918318/1‑93 (MQ=255)

                            tGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCa                                                                 >  1:6180402/1‑93 (MQ=255)

                             gTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAg                                                                <  2:2344163/93‑1 (MQ=255)

                              tCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGCATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGa                                                               >  1:3677815/1‑93 (MQ=255)

                                ggCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACt                                                             >  2:5621332/1‑93 (MQ=255)

                                ggCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACt                                                             >  2:770529/1‑93 (MQ=255)

                                ggCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACACAGATGCAGAcc                                                             >  2:3944017/1‑92 (MQ=255)

                                 gCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTc                                                            <  2:5485416/93‑1 (MQ=255)

                                  cTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCa                                                           <  1:1011683/93‑1 (MQ=255)

                                  cTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCa                                                           <  1:2301722/93‑1 (MQ=255)

                                  cTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCa                                                           <  2:5817153/93‑1 (MQ=255)

                                   tttGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAg                                                          <  2:1555767/93‑1 (MQ=255)

                                    ttGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGc                                                         <  1:638428/93‑1 (MQ=255)

                                    ttGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGc                                                         >  2:3431279/1‑93 (MQ=255)

                                     tGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCa                                                        <  1:4854494/93‑1 (MQ=255)

                                      gCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCaa                                                       >  2:3462578/1‑93 (MQ=255)

                                        acaGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAAt                                                     >  1:2139554/1‑93 (MQ=255)

                                         caGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATc                                                    <  2:3709851/93‑1 (MQ=255)

                                         caGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATc                                                    >  1:2434839/1‑93 (MQ=255)

                                         caGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATc                                                    <  1:5017921/93‑1 (MQ=255)

                                          aGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATcc                                                   >  1:1826934/1‑93 (MQ=255)

                                            cccATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAg                                                 >  2:3083420/1‑93 (MQ=255)

                                             ccATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGc                                                >  2:4492678/1‑93 (MQ=255)

                                              cATTAATCCTCTGAACAACCCTAACCAGCCGGGGTATCAGAAACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCa                                               <  2:6548836/93‑1 (MQ=255)

                                              cATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCa                                               >  1:3260797/1‑93 (MQ=255)

                                                 tAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCaaaa                                            >  1:1985230/1‑93 (MQ=255)

                                                  aaTACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCaaaaa                                           >  2:4470715/1‑93 (MQ=255)

                                                   aTACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAg                                          <  2:138024/93‑1 (MQ=255)

                                                    tACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAgg                                         >  2:3810591/1‑93 (MQ=255)

                                                      ctctGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAGCCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGa                                       <  1:2631560/93‑1 (MQ=255)

                                                      ctctGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGa                                       >  1:2939694/1‑93 (MQ=255)

                                                      ctctGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGa                                       <  1:523950/93‑1 (MQ=255)

                                                      ctctGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGa                                       <  2:6506947/93‑1 (MQ=255)

                                                      ctctGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGa                                       >  1:3303038/1‑93 (MQ=255)

                                                         tGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGc                                    <  1:6241594/93‑1 (MQ=255)

                                                         tGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGc                                    >  1:3286168/1‑93 (MQ=255)

                                                          gAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCt                                   <  1:4526012/93‑1 (MQ=255)

                                                          gAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCt                                   <  1:5423695/93‑1 (MQ=255)

                                                          gAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCt                                   >  2:1666006/1‑93 (MQ=255)

                                                           aacaacCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTg                                  >  2:275569/1‑93 (MQ=255)

                                                           aacaacCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTg                                  <  1:157390/93‑1 (MQ=255)

                                                                   tAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCa                          <  2:5147401/93‑1 (MQ=255)

                                                                   tAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCa                          <  1:4785075/93‑1 (MQ=255)

                                                                     aCCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAAc                        <  1:3831623/93‑1 (MQ=255)

                                                                     aCCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAAc                        >  2:5386481/1‑93 (MQ=255)

                                                                     aCCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAAc                        >  1:882115/1‑93 (MQ=255)

                                                                      ccAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACt                       <  2:4070701/93‑1 (MQ=255)

                                                                       cAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTg                      >  2:1870884/1‑93 (MQ=255)

                                                                       cAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTg                      >  2:2508392/1‑93 (MQ=255)

                                                                          ccGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGaaa                   >  2:1194722/1‑93 (MQ=255)

                                                                           cGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGaaaa                  <  2:5447217/93‑1 (MQ=255)

                                                                             gggTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACg                >  1:6297746/1‑93 (MQ=255)

                                                                              ggTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGc               >  2:3227109/1‑93 (MQ=255)

                                                                               gTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCa              >  1:580021/1‑93 (MQ=255)

                                                                                tATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCaa             >  2:607757/1‑93 (MQ=255)

                                                                                tATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCaa             >  1:5962293/1‑93 (MQ=255)

                                                                                 aTCAGATACCCGGCGAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACTCaaa            <  1:642799/93‑1 (MQ=255)

                                                                                 aTCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCaaa            <  1:6371103/93‑1 (MQ=255)

                                                                                  tCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAAc           >  1:5475440/1‑93 (MQ=255)

                                                                                  tCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAAc           <  2:6023067/93‑1 (MQ=255)

                                                                                  tCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAAc           >  1:96999/1‑93 (MQ=255)

                                                                                   cAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACt          <  2:2019919/93‑1 (MQ=255)

                                                                                     gATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCa        >  1:5819280/1‑93 (MQ=255)

                                                                                     gATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCa        >  2:6259159/1‑93 (MQ=255)

                                                                                      aTACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAg       <  1:3777548/93‑1 (MQ=255)

                                                                                       tACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGt      <  2:3877183/93‑1 (MQ=255)

                                                                                        aCCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGtt     <  2:5781041/93‑1 (MQ=255)

                                                                                        aCCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGtt     <  2:6378733/93‑1 (MQ=255)

                                                                                        aCCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGtt     <  2:2835097/93‑1 (MQ=255)

TTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGTTGCA  >  NC_000913/3584584‑3584767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGTTGCAAC  >  NC_000913/3584583‑3584769

CTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCG                                                                                               >  SRR4302547.3133266/1‑94 (MQ=60)

CTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCG                                                                                               >  SRR4302547.930387/1‑94 (MQ=60)

CTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCG                                                                                               >  SRR4302547.3914463/1‑94 (MQ=60)

CTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCG                                                                                               >  SRR4302547.1608495/1‑94 (MQ=60)

CTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCG                                                                                               >  SRR4302547.2621424/1‑94 (MQ=60)

CTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCA                                                                                               <  SRR4302547.2094761/94‑1 (MQ=60)

 TTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTCTCAGATACCCGG                                                                                              >  SRR4302547.4157578/1‑94 (MQ=60)

   CTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCC                                                                                            >  SRR4302547.5004250/1‑94 (MQ=60)

    TGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCA                                                                                           <  SRR4302547.4377809/94‑1 (MQ=60)

    TGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCA                                                                                           <  SRR4302547.494216/94‑1 (MQ=60)

    TGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCA                                                                                           >  SRR4302547.2567163/1‑94 (MQ=60)

     GATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAG                                                                                          >  SRR4302547.2071874/1‑94 (MQ=60)

      ATTCTTACGGCCCTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGC                                                                                         <  SRR4302547.5222070/94‑1 (MQ=60)

      ATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGC                                                                                         >  SRR4302547.2093236/1‑94 (MQ=60)

      ATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGC                                                                                         <  SRR4302547.5672828/94‑1 (MQ=60)

       TTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCA                                                                                        >  SRR4302547.3880880/1‑94 (MQ=60)

       TTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCA                                                                                        <  SRR4302547.5646009/94‑1 (MQ=60)

       TTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCA                                                                                        <  SRR4302547.4548072/94‑1 (MQ=60)

        TCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAG                                                                                       >  SRR4302547.6376218/1‑94 (MQ=60)

         CTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGC                                                                                      <  SRR4302547.3999857/94‑1 (MQ=60)

         CTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGC                                                                                      >  SRR4302547.3248667/1‑94 (MQ=60)

         CTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGC                                                                                      >  SRR4302547.4523995/1‑94 (MQ=60)

           TACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGG                                                                                    <  SRR4302547.3817847/94‑1 (MQ=60)

             CGGCCCTCCGGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGAT                                                                                  <  SRR4302547.3138388/94‑1 (MQ=60)

             CGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGAT                                                                                  <  SRR4302547.3063025/94‑1 (MQ=60)

             CGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGAT                                                                                  <  SRR4302547.3763804/94‑1 (MQ=60)

              GGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATG                                                                                 <  SRR4302547.2081018/94‑1 (MQ=60)

              GGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATG                                                                                 <  SRR4302547.4509279/94‑1 (MQ=60)

               GCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGC                                                                                >  SRR4302547.1565922/1‑94 (MQ=60)

                CACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCA                                                                               >  SRR4302547.6633568/1‑94 (MQ=60)

                 AGTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAA                                                                              >  SRR4302547.6515390/1‑94 (MQ=60)

                 ACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAA                                                                              >  SRR4302547.3335085/1‑94 (MQ=60)

                 ACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAA                                                                              >  SRR4302547.5056166/1‑94 (MQ=60)

                 ACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAA                                                                              >  SRR4302547.4925427/1‑94 (MQ=60)

                 ACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAA                                                                              >  SRR4302547.240407/1‑94 (MQ=60)

                 ACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAA                                                                              >  SRR4302547.3603461/1‑94 (MQ=60)

                  CTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAA                                                                             >  SRR4302547.6050128/1‑94 (MQ=60)

                   TCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAAC                                                                            >  SRR4302547.4709983/1‑94 (MQ=60)

                    CCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACC                                                                           <  SRR4302547.2262643/94‑1 (MQ=60)

                    CCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACC                                                                           >  SRR4302547.6371106/1‑94 (MQ=60)

                    CCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAAAAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACC                                                                           <  SRR4302547.3466815/94‑1 (MQ=60)

                     CTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCC                                                                          >  SRR4302547.4588403/1‑94 (MQ=60)

                     CTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCC                                                                          >  SRR4302547.5069905/1‑94 (MQ=60)

                      TGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCA                                                                         >  SRR4302547.126456/1‑94 (MQ=60)

                       GCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTACCCAGCCGGGGTATCAGATCCCCGGCCAGCAGCGGATGCAAACCCAG                                                                        <  SRR4302547.6548750/94‑1 (MQ=60)

                        CCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGA                                                                       >  SRR4302547.2597199/1‑94 (MQ=60)

                        CCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGA                                                                       <  SRR4302547.6201220/94‑1 (MQ=60)

                        CCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGA                                                                       <  SRR4302547.179173/94‑1 (MQ=60)

                         CGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGAT                                                                      >  SRR4302547.4201080/1‑94 (MQ=60)

                         CGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGAT                                                                      <  SRR4302547.3814245/94‑1 (MQ=60)

                         CGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGAT                                                                      <  SRR4302547.4178710/94‑1 (MQ=60)

                         CGTTTGTCGGCTTTGCACAGCCAATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGAT                                                                      <  SRR4302547.1455818/94‑1 (MQ=60)

                          GTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATG                                                                     >  SRR4302547.6512280/1‑94 (MQ=60)

                          GTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATG                                                                     >  SRR4302547.4777310/1‑94 (MQ=60)

                          GTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATG                                                                     >  SRR4302547.1956310/1‑94 (MQ=60)

                          GTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATG                                                                     <  SRR4302547.1091224/94‑1 (MQ=60)

                            TTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCA                                                                   >  SRR4302547.6308680/1‑94 (MQ=60)

                              GTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGCATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGA                                                                 >  SRR4302547.3752891/1‑94 (MQ=60)

                                CGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACT                                                               >  SRR4302547.644301/1‑94 (MQ=60)

                                 GGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTC                                                              >  SRR4302547.3266388/1‑94 (MQ=60)

                                   CTTTGCCCAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAG                                                            <  SRR4302547.4062768/94‑1 (MQ=60)

                                   CTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAG                                                            <  SRR4302547.2348365/94‑1 (MQ=60)

                                   CTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAG                                                            <  SRR4302547.1031453/94‑1 (MQ=60)

                                     TTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCA                                                          <  SRR4302547.650212/94‑1 (MQ=60)

                                     TTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCA                                                          >  SRR4302547.1677082/1‑94 (MQ=60)

                                      TGCACAGCCCATTAATACTCTGAACACCCCTAACCAGCCGGGGTATCAGATCCCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAA                                                         <  SRR4302547.241576/94‑1 (MQ=60)

                                      TGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAA                                                         <  SRR4302547.4955073/94‑1 (MQ=60)

                                      TGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAA                                                         <  SRR4302547.4971102/94‑1 (MQ=60)

                                      TGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAA                                                         >  SRR4302547.3353178/1‑94 (MQ=60)

                                        CACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAAT                                                       >  SRR4302547.1230206/1‑94 (MQ=60)

                                        CACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAAT                                                       >  SRR4302547.2182218/1‑94 (MQ=60)

                                         ACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATC                                                      >  SRR4302547.2484092/1‑94 (MQ=60)

                                          CAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCC                                                     <  SRR4302547.5121628/94‑1 (MQ=60)

                                          CAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCC                                                     <  SRR4302547.5623227/94‑1 (MQ=60)

                                          CAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCC                                                     >  SRR4302547.1863046/1‑94 (MQ=60)

                                           AGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCA                                                    >  SRR4302547.1961434/1‑94 (MQ=60)

                                            GCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAG                                                   <  SRR4302547.4919893/94‑1 (MQ=60)

                                             CCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGC                                                  <  SRR4302547.1353055/94‑1 (MQ=60)

                                              CCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCA                                                 >  SRR4302547.3033699/1‑94 (MQ=60)

                                              CCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCA                                                 <  SRR4302547.1291639/94‑1 (MQ=60)

                                              CCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCA                                                 >  SRR4302547.2011522/1‑94 (MQ=60)

                                              CCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCA                                                 >  SRR4302547.6245564/1‑94 (MQ=60)

                                              CCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCA                                                 >  SRR4302547.3325995/1‑94 (MQ=60)

                                               CATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAA                                                >  SRR4302547.1218396/1‑94 (MQ=60)

                                                ATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAA                                               <  SRR4302547.3803644/94‑1 (MQ=60)

                                                ATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAA                                               >  SRR4302547.984840/1‑94 (MQ=60)

                                                ATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAA                                               >  SRR4302547.3175683/1‑94 (MQ=60)

                                                 TTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAA                                              >  SRR4302547.2024650/1‑94 (MQ=60)

                                                    ATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCCGATGCAGACTCACCAAATCCAGCAAAAAGG                                           >  SRR4302547.2634274/1‑94 (MQ=60)

                                                    ATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCACAAAGG                                           >  SRR4302547.6361113/1‑94 (MQ=60)

                                                     TACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGG                                          <  SRR4302547.2255954/94‑1 (MQ=60)

                                                     TACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGG                                          <  SRR4302547.3534729/94‑1 (MQ=60)

                                                      ACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGA                                         >  SRR4302547.2998265/1‑94 (MQ=60)

                                                      ACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGA                                         >  SRR4302547.3369544/1‑94 (MQ=60)

                                                       ctcaaAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGAT                                        <  SRR4302547.2412889/89‑1 (MQ=60)

                                                       CTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAGCCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGAT                                        <  SRR4302547.2684559/94‑1 (MQ=60)

                                                       CTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGAT                                        <  SRR4302547.533434/94‑1 (MQ=60)

                                                        TCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATG                                       <  SRR4302547.2821043/94‑1 (MQ=60)

                                                        TCTAAACAACCCTAACCAGCCCAGGGATCAGATTCCCCGCCAGCAGCGGATGCAAACCCAGATACAGACTCAACAAATCCAGCAAAAAGGGATG                                       >  SRR4302547.2652553/1‑94 (MQ=60)

                                                         CTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGC                                      >  SRR4302547.3352079/1‑94 (MQ=60)

                                                          TGAACAACCCTACCCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCT                                     <  SRR4302547.5786474/94‑1 (MQ=60)

                                                          TGAACAACCCTAACCATCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATTCT                                     <  SRR4302547.6496845/94‑1 (MQ=60)

                                                          TGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCT                                     <  SRR4302547.5786641/94‑1 (MQ=60)

                                                          TGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCT                                     <  SRR4302547.6371256/94‑1 (MQ=60)

                                                          TGAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCT                                     <  SRR4302547.3582676/94‑1 (MQ=60)

                                                           GAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTG                                    <  SRR4302547.4619542/94‑1 (MQ=60)

                                                           GAACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTG                                    <  SRR4302547.5535861/94‑1 (MQ=60)

                                                            AACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGA                                   <  SRR4302547.160275/94‑1 (MQ=60)

                                                             ACAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAA                                  >  SRR4302547.3450813/1‑94 (MQ=60)

                                                              CAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAAT                                 <  SRR4302547.4942705/94‑1 (MQ=60)

                                                              CAACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAAT                                 >  SRR4302547.5935529/1‑94 (MQ=60)

                                                               AACCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATC                                <  SRR4302547.46252/94‑1 (MQ=60)

                                                                 CCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAG                              >  SRR4302547.5417826/1‑94 (MQ=60)

                                                                 CCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAG                              >  SRR4302547.5579075/1‑94 (MQ=60)

                                                                 CCCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAG                              <  SRR4302547.2956101/94‑1 (MQ=60)

                                                                 CCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAG                              >  SRR4302547.5178499/1‑94 (MQ=60)

                                                                  CCTAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGC                             >  SRR4302547.2149782/1‑94 (MQ=60)

                                                                   CTACCCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCA                            <  SRR4302547.1954087/94‑1 (MQ=60)

                                                                    TAACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAA                           <  SRR4302547.4884187/94‑1 (MQ=60)

                                                                     AACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAAC                          >  SRR4302547.899067/1‑94 (MQ=60)

                                                                      ACCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACT                         <  SRR4302547.3909676/94‑1 (MQ=60)

                                                                       CCAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTG                        >  SRR4302547.4867580/1‑94 (MQ=60)

                                                                       CCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTG                        <  SRR4302547.5384380/94‑1 (MQ=60)

                                                                        CAGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTTA                       >  SRR4302547.3332734/1‑94 (MQ=60)

                                                                         AGCCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAA                      <  SRR4302547.859351/94‑1 (MQ=60)

                                                                           CCGGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAA                    >  SRR4302547.4841795/1‑94 (MQ=60)

                                                                           CCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAA                    >  SRR4302547.4218128/1‑94 (MQ=60)

                                                                             GGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACG                  >  SRR4302547.6428656/1‑94 (MQ=60)

                                                                             GGGGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACG                  >  SRR4302547.6022182/1‑94 (MQ=60)

                                                                               GGTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCA                >  SRR4302547.590424/1‑94 (MQ=60)

                                                                                GTATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAA               >  SRR4302547.6085938/1‑94 (MQ=60)

                                                                                  ATCAGATACCCGGCGAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACTCAAAC             <  SRR4302547.654653/94‑1 (MQ=60)

                                                                                  ATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAAC             <  SRR4302547.6504034/94‑1 (MQ=60)

                                                                                  ATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAAC             >  SRR4302547.5588534/1‑94 (MQ=60)

                                                                                  ATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAAC             <  SRR4302547.1856579/94‑1 (MQ=60)

                                                                                  ATCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAAC             >  SRR4302547.98800/1‑94 (MQ=60)

                                                                                   TCAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACT            <  SRR4302547.2553476/94‑1 (MQ=60)

                                                                                    CAGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTC           <  SRR4302547.3638990/94‑1 (MQ=60)

                                                                                     AGATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCA          >  SRR4302547.5939676/1‑94 (MQ=60)

                                                                                      GATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAG         <  SRR4302547.980059/94‑1 (MQ=60)

                                                                                       ATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGT        <  SRR4302547.3854586/94‑1 (MQ=60)

                                                                                       ATACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGT        <  SRR4302547.1836357/94‑1 (MQ=60)

                                                                                       ATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGT        >  SRR4302547.1637683/1‑94 (MQ=60)

                                                                                        TACCCGGCCAGCAGCGGATGCGAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGTT       >  SRR4302547.3850970/1‑94 (MQ=60)

                                                                                        TACCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGTT       <  SRR4302547.3379005/94‑1 (MQ=60)

                                                                                          CCCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGTTGC     <  SRR4302547.3303678/94‑1 (MQ=60)

                                                                                           CCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGTTGCA    <  SRR4302547.6174714/94‑1 (MQ=60)

                                                                                           CCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGTTGCA    >  SRR4302547.4282818/1‑94 (MQ=60)

                                                                                           CCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGTTGCA    <  SRR4302547.2095411/94‑1 (MQ=60)

                                                                                           CCGGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGTTGCA    <  SRR4302547.1994308/94‑1 (MQ=60)

                                                                                           CCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGTTGCA    >  SRR4302547.1032370/1‑94 (MQ=60)

                                                                                             GGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGTTGCAAC  <  SRR4302547.2824640/94‑1 (MQ=60)

CTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATACTCTGAACAACCCTAACCAGCCGGGGTATCAGATACCCAGCCAGCAGCGGATGCAAACCCAGATGCAGACTCAGCAAATCCAGCAAAAAGGGATGCTGAATCAGCAACTGAAAACGCAAACTCAGTTGCAAC  >  NC_000913/3584583‑3584769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`