Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,592,609 |
A→G |
L168P (CTG→CCG) |
livM ← |
LivM |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,592,609 | 0 | A | G | 87.0%
| 610.9
/ 75.3
| 230 | L168P (CTG→CCG) | livM | LivM |
| Reads supporting (aligned to +/- strand): ref base A (16/14); new base G (96/104); total (112/118) |
| Fisher's exact test for biased strand distribution p-value = 6.96e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.74e-01 |
Only 100 of 269 total aligned reads displayed.
GGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAGCACCAGC > NC_000913/3592518‑3592701
|
ggTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCggcag > 2:3214956/1‑93 (MQ=255)
tAACGATCGCCATATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCggcgggc > 2:3275865/1‑93 (MQ=255)
tAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCggcgggc < 1:1367656/93‑1 (MQ=255)
aCGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGgcgggcag < 1:4203906/93‑1 (MQ=255)
cGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGcgggcagg < 2:3941167/93‑1 (MQ=255)
aTCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCACTCGGCAGGCAAGTc > 1:5579865/1‑93 (MQ=255)
tCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTcc < 2:4145496/93‑1 (MQ=255)
cGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCa < 1:1926054/93‑1 (MQ=255)
cGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCa < 1:2395961/93‑1 (MQ=255)
cGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCa < 2:4431356/93‑1 (MQ=255)
gCCAGATAGTCACCGCGCAACGGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAg < 2:2438362/93‑1 (MQ=255)
gCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAg > 1:6217549/1‑93 (MQ=255)
cccAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAg < 2:1229679/92‑1 (MQ=255)
ccAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGa < 2:5711039/93‑1 (MQ=255)
ccAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGa > 2:3311920/1‑93 (MQ=255)
cAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGaa > 1:778761/1‑93 (MQ=255)
cAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGAAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGaa < 2:2580974/93‑1 (MQ=255)
aGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAg > 1:673611/1‑93 (MQ=255)
gATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGGCCAGAAGc > 2:640749/1‑93 (MQ=255)
tAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGccc > 1:1562542/1‑93 (MQ=255)
tAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGccc > 2:3407917/1‑93 (MQ=255)
aGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCa < 1:4448276/93‑1 (MQ=255)
aGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCa > 1:2812645/1‑93 (MQ=255)
aGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCa < 1:5476192/93‑1 (MQ=255)
tCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAg > 2:5850877/1‑93 (MQ=255)
tCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAg > 1:6622950/1‑93 (MQ=255)
tCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAg < 2:4234561/93‑1 (MQ=255)
gcAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAAt < 1:3322738/93‑1 (MQ=255)
cAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCGAGAAGCCCAAGCCGTAATa < 1:6499248/93‑1 (MQ=255)
cAAACGCAGCACCGGAAAACCGAGCAGGAACCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATa < 2:2960508/93‑1 (MQ=255)
aaccGCAGCACCGGAAAACGGAGCAGAAACCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAg < 1:4683129/90‑1 (MQ=255)
aaaCGCAGCACGGAAAACCCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAg < 2:3518768/93‑1 (MQ=255)
aaaCGCAGCACCGGAAAGCCGAGCAGAAAACCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCGGGTCCAGAAGCCCAAGCCGTAATAg < 1:3676301/93‑1 (MQ=255)
aaaCGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAg > 1:3549791/1‑93 (MQ=255)
aaCGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGt > 2:5391653/1‑93 (MQ=255)
aaCGCAGCACCGGAAAACCAAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGt < 2:4695928/93‑1 (MQ=255)
cGCAGCACCGAAAAACCGACCAGGAGCCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGAAATAGTGa < 1:6455117/93‑1 (MQ=255)
gcagcgCGGGAAAACGGAGCAGGAAGCCCGCCGCCTCTGCCATTAATCCAGCAAGCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGAt < 1:1478463/93‑1 (MQ=255)
cagcaCCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGAtt > 1:4495740/1‑93 (MQ=255)
cagcaCCGGAAAACCAAGCAGAAACCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGAtt < 1:4396938/93‑1 (MQ=255)
agcaCCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCCGGTCCAGAAGCCCAACCCGTACTAGTGGTTg > 1:5701179/1‑93 (MQ=255)
gcaCCGGAAAACCGGCCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATGGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGa < 1:5715090/93‑1 (MQ=255)
gcaCCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGa < 1:3366440/93‑1 (MQ=255)
acaCCGGAAACCCGAGCAGAAACCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGa < 1:2151322/92‑1 (MQ=255)
aCCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGagc > 1:1483606/1‑93 (MQ=255)
ccGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGGAGCCCAAGCCGTAATAGTGATTGagca > 2:2764754/1‑93 (MQ=255)
ccGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGagca > 2:1676610/1‑93 (MQ=255)
ccGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGagca > 1:2682424/1‑93 (MQ=255)
ccGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGagca < 1:3820657/93‑1 (MQ=255)
ggAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGagcagc < 2:1148157/93‑1 (MQ=255)
gaaaacCCGAGCAGAAACCCCCCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCAAGAAGCCCAAGCCGTAATAGTGATTGagcagc < 1:596426/91‑1 (MQ=255)
aCCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCaaa > 1:961771/1‑93 (MQ=255)
cGAGCAGGAACCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAg < 1:1126441/93‑1 (MQ=255)
gAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAgt > 2:2295157/1‑93 (MQ=255)
aGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGGAAAAgtg > 2:94295/1‑93 (MQ=255)
gCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAgtgt > 2:2663810/1‑93 (MQ=255)
gCAGAAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAgtgt < 1:659124/93‑1 (MQ=255)
gaGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTa < 1:4139296/92‑1 (MQ=255)
aGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGGCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTaa > 2:3721935/1‑93 (MQ=255)
ggAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAg > 2:1130506/1‑93 (MQ=255)
ggAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAg > 1:6132511/1‑93 (MQ=255)
ggAAGCCCCCCCCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCAAGAAGCCAAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAg < 2:3464946/93‑1 (MQ=255)
gaaaGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAg < 2:5020037/91‑1 (MQ=255)
gAAGCCCGCCGCGGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCAAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAgc < 2:3122870/93‑1 (MQ=255)
aaGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAgcg > 1:2159074/1‑93 (MQ=255)
aGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAgcgc < 2:6013661/93‑1 (MQ=255)
aGCCCCCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAgcgc < 1:5313152/93‑1 (MQ=255)
gCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGcc > 2:318221/1‑93 (MQ=255)
ccgccgccgCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGa < 2:6532558/93‑1 (MQ=255)
ccgccgccgCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGa < 1:877263/93‑1 (MQ=255)
cgccgccgcTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGAt < 1:1769984/93‑1 (MQ=255)
ccgccgcTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATgg < 1:2995673/93‑1 (MQ=255)
ccgcTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGt > 1:5032781/1‑93 (MQ=255)
ccgcTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGt < 1:3988818/93‑1 (MQ=255)
ccgcTGCAATTAATCGAGCAATCGGCAGGCAGGTCCAGAAGCCAAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGt < 2:1282490/93‑1 (MQ=255)
cgcTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTa < 2:406499/93‑1 (MQ=255)
gcTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTaa > 2:5615409/1‑93 (MQ=255)
gcTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTaa > 2:865814/1‑93 (MQ=255)
cTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTaaa < 2:1762440/93‑1 (MQ=255)
cTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTaaa > 1:2527297/1‑93 (MQ=255)
cTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTaaa > 1:429864/1‑93 (MQ=255)
tGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTaaaa > 2:358001/1‑93 (MQ=255)
tGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGGAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGAGGGCGTaaaa > 2:1381421/1‑93 (MQ=255)
gCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTaaaaa > 1:5850333/1‑93 (MQ=255)
gCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGAGTAAGCGCCGATGGCGTaaaaa > 2:6444731/1‑93 (MQ=255)
ccATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAAc > 1:2717509/1‑93 (MQ=255)
ccATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAAc < 2:802284/93‑1 (MQ=255)
ccATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAAc < 1:910784/93‑1 (MQ=255)
cATTAATCCAGCAATCGGCAGGCAGGTCTAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAAcc > 2:1353715/1‑93 (MQ=255)
aTCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGt > 1:3096443/1‑93 (MQ=255)
tCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGGAATAGGGAATGAGCAGCCCAAAAGTGTAAGCGCCGATGGCGTAAAAAccgccgga > 1:1071853/1‑91 (MQ=255)
ccAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGAGCCGATGGCGTAAAAACCGCCGTAc > 1:2043248/1‑93 (MQ=255)
cAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTAcc > 1:4958851/1‑93 (MQ=255)
aGCAATCGGGGGGCAGGTCGAGAGGCCTAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTAccc < 2:4867632/93‑1 (MQ=255)
aGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTAccc > 1:5619448/1‑93 (MQ=255)
gCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTAcccc > 2:678237/1‑93 (MQ=255)
aaTCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCccag > 1:2301073/1‑93 (MQ=255)
aaTCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCccag > 1:6042553/1‑93 (MQ=255)
aaTCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCccag > 2:6458378/1‑93 (MQ=255)
ggcgggcaGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCccagcacc < 2:1910262/93‑1 (MQ=255)
|
GGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAACCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAGCACCAGC > NC_000913/3592518‑3592701
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAGCACCAG > NC_000913/3592516‑3592700
|
AGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCG < SRR4302547.1307540/94‑1 (MQ=60)
AGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCG < SRR4302547.1530895/94‑1 (MQ=60)
AGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCA < SRR4302547.5163663/94‑1 (MQ=60)
GGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGG > SRR4302547.2435152/1‑94 (MQ=60)
GTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGC < SRR4302547.3894725/94‑1 (MQ=60)
TAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCA < SRR4302547.1395107/94‑1 (MQ=60)
AACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAG > SRR4302547.6617184/1‑94 (MQ=60)
ACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGG < SRR4302547.4289672/94‑1 (MQ=60)
GATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCACTCGGCAGGCAAGTC > SRR4302547.5694932/1‑94 (MQ=60)
GATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTC > SRR4302547.1121105/1‑94 (MQ=60)
GATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTC < SRR4302547.6559541/94‑1 (MQ=60)
CCGCCAGATAGTCACCGCGCAACCGCAGCACCGGAAAG‑CCGAGCAGGAAGCCGGCCGCCGCTGCCATTAATCCAGCAAGCGGCGGGCAGGTCCA < SRR4302547.3759520/94‑1 (MQ=60)
CGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAG < SRR4302547.1964212/94‑1 (MQ=60)
CGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAG < SRR4302547.2444493/94‑1 (MQ=60)
CGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAG > SRR4302547.6346673/1‑94 (MQ=60)
CGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAG < SRR4302547.4355148/94‑1 (MQ=60)
CGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAG < SRR4302547.973778/94‑1 (MQ=60)
GCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGA < SRR4302547.6782812/94‑1 (MQ=60)
GCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGA > SRR4302547.2138092/1‑94 (MQ=60)
CCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAA > SRR4302547.6219157/1‑94 (MQ=60)
CCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAA > SRR4302547.793481/1‑94 (MQ=60)
CAGATAGTCACCGCGCAAACGCAGCACCGGAAAC‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAG < SRR4302547.4458963/94‑1 (MQ=60)
CAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAG > SRR4302547.686003/1‑94 (MQ=60)
CAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAG > SRR4302547.1534070/1‑94 (MQ=60)
CAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAG < SRR4302547.1152006/94‑1 (MQ=60)
ATAGTCACCGCGCAAACGCAGCACCGGAAAC‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCC < SRR4302547.6756349/94‑1 (MQ=60)
ATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCC > SRR4302547.1593665/1‑94 (MQ=60)
TAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCA > SRR4302547.2868920/1‑94 (MQ=60)
AGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAA < SRR4302547.332399/94‑1 (MQ=60)
AGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAA < SRR4302547.4540255/94‑1 (MQ=60)
AGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTACAGAAACCCAA > SRR4302547.3040219/1‑94 (MQ=60)
AGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAA < SRR4302547.5589299/94‑1 (MQ=60)
GTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAG > SRR4302547.6760810/1‑94 (MQ=60)
TCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGC > SRR4302547.3671178/1‑94 (MQ=60)
ACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCG > SRR4302547.1614527/1‑94 (MQ=60)
ACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCG < SRR4302547.5644151/94‑1 (MQ=60)
CCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGT > SRR4302547.5788334/1‑94 (MQ=60)
CGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTA < SRR4302547.5957998/94‑1 (MQ=60)
CGCGCAAACGCAGCACCGAAAAA‑CCGAGCAGGAACCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTA < SRR4302547.5225941/94‑1 (MQ=60)
CGCAAGCTCAGCACCGGAAAC‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAAT < SRR4302547.1712846/94‑1 (MQ=60)
CGCAAAGGCACCCCCGGAAAG‑CCGAACAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAAT < SRR4302547.4189985/94‑1 (MQ=60)
GCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATA < SRR4302547.727344/94‑1 (MQ=60)
GCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATA < SRR4302547.3389862/94‑1 (MQ=60)
CAAACGCAGCACCGGAAAC‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAG < SRR4302547.635626/94‑1 (MQ=60)
CAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCGAGAAGCCCAAGCCGTAATAG < SRR4302547.6634521/94‑1 (MQ=60)
CAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAG < SRR4302547.5827716/94‑1 (MQ=60)
CAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAG > SRR4302547.3622238/1‑94 (MQ=60)
AACCGCAGCACCGGAAAA‑CGGAGCAGAAACCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGT < SRR4302547.4780129/94‑1 (MQ=60)
AAACGCAGCACCGGAAAG‑CCGAGCAGAAAACCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCGGGTCCAGAAGCCCAAGCCGTAATAGT < SRR4302547.3751303/94‑1 (MQ=60)
accaCAGCACCGGAAAC‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAACCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTG < SRR4302547.576062/90‑1 (MQ=60)
AGCGCAGCACAGGAAAA‑CCGAGCAGAAAGCCCGCCGCCGCTGCCATAAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTG < SRR4302547.6247457/94‑1 (MQ=60)
AACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTG > SRR4302547.611607/1‑94 (MQ=60)
ACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGA < SRR4302547.4709535/94‑1 (MQ=60)
CGCAGCACCGAAAAA‑CCGACCAGGAGCCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGAAATAGTGAT < SRR4302547.6589570/94‑1 (MQ=60)
GCAGCGCGGGAAAA‑CGGAGCAGGAAGCCCGCCGCCTCTGCCATTAATCCAGCAAGCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATT < SRR4302547.1507988/94‑1 (MQ=60)
GCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATT > SRR4302547.4588594/1‑94 (MQ=60)
GCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATT > SRR4302547.1508294/1‑94 (MQ=60)
CAGCACGGGAAAA‑CCGAGCAGGAACCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTG < SRR4302547.3472175/94‑1 (MQ=60)
CAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCCGGTCCAGAAGCCCAACCCGTACTAGTGGTTG > SRR4302547.5818940/1‑94 (MQ=60)
CAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTG < SRR4302547.952261/94‑1 (MQ=60)
CAGCACCGGAAAA‑CCAAGCAGAAACCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTG < SRR4302547.4487471/94‑1 (MQ=60)
AGCACCGGAAAC‑CCAAGCAGGAGGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGA < SRR4302547.739595/94‑1 (MQ=60)
GCACCGGAAAA‑CCGGCCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATGGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAG < SRR4302547.5833127/94‑1 (MQ=60)
GCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAG < SRR4302547.3434811/94‑1 (MQ=60)
ACACCGGAAAC‑CCGAGCAGAAACCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAG < SRR4302547.2194270/94‑1 (MQ=60)
CACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGGCCAAGGCGTAATAGTGATTGAGC > SRR4302547.244006/1‑94 (MQ=60)
CACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGC > SRR4302547.1513213/1‑94 (MQ=60)
CACCGGAAAA‑CCGAGAAGAAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGC < SRR4302547.913271/94‑1 (MQ=60)
ACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCA > SRR4302547.2736285/1‑94 (MQ=60)
CCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAG < SRR4302547.3898507/94‑1 (MQ=60)
CCGAAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAG < SRR4302547.5713969/94‑1 (MQ=60)
CGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTTCCATTAATCCAGCAATCGGCGGGCAGGGCCAGGAGCCCAAGCCGTAATAGTGATTGAGCAGC > SRR4302547.5785190/1‑94 (MQ=60)
CGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGC > SRR4302547.4494764/1‑94 (MQ=60)
CGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGC > SRR4302547.4650384/1‑94 (MQ=60)
GGAAAC‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCG < SRR4302547.889470/94‑1 (MQ=60)
GGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCG > SRR4302547.3921327/1‑94 (MQ=60)
GGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCG > SRR4302547.2743802/1‑94 (MQ=60)
GGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCG > SRR4302547.45581/1‑94 (MQ=60)
GAAAACCCGAGCAGAAACCCCCCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCAAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCG < SRR4302547.607383/94‑1 (MQ=60)
AAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCACTCGGCGGGCAGGTCCCGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCA > SRR4302547.2043423/1‑94 (MQ=60)
AAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAA > SRR4302547.1870213/1‑94 (MQ=60)
AAA‑CCGAGCAGGAAGCCCGCCGCCGCCGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCCA > SRR4302547.2725641/1‑94 (MQ=60)
AG‑CCGAGCAGGAACCCCGCCGCCGCTGCCATTAATCCAGCAGTCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAA < SRR4302547.4344040/94‑1 (MQ=60)
AA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAA > SRR4302547.980445/1‑94 (MQ=60)
CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAG > SRR4302547.2305188/1‑94 (MQ=60)
CGAGCAGGAGGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGT < SRR4302547.2353974/94‑1 (MQ=60)
CGAGCAGGAACCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGT < SRR4302547.1149172/94‑1 (MQ=60)
gacaagaagcccccCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTG < SRR4302547.5889080/80‑1 (MQ=60)
GAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTG > SRR4302547.117036/1‑94 (MQ=60)
GCGGGAAGCCCGCCGCGGCTGCCATTAATCGAGCAATGGGCGGGCAGGTCCAGAAGCCAAGGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTA < SRR4302547.2191331/94‑1 (MQ=60)
GCAGAAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTA < SRR4302547.671263/94‑1 (MQ=60)
GAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAA < SRR4302547.4223520/94‑1 (MQ=60)
CAGGAAGCCCCCGGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAA < SRR4302547.510686/94‑1 (MQ=60)
CAGAAACCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAA < SRR4302547.5903448/94‑1 (MQ=60)
AGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAG > SRR4302547.1551012/1‑94 (MQ=60)
AGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAG > SRR4302547.6259713/1‑94 (MQ=60)
AGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGGGATTGAGCAGCGCAAAAGTGCAAG > SRR4302547.803550/1‑94 (MQ=60)
GGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGC < SRR4302547.3714150/94‑1 (MQ=60)
GGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGC < SRR4302547.2701894/94‑1 (MQ=60)
gaacgCCGCCGCCGCTGCCATGAAGCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCG < SRR4302547.2876939/89‑1 (MQ=60)
GAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCG > SRR4302547.2202225/1‑94 (MQ=60)
GAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCG < SRR4302547.571819/94‑1 (MQ=60)
ACGCCCGCCGCCCCTGCCATTATCCCAGCAATCGGCGGGCAGGTCCGGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGC < SRR4302547.3420343/94‑1 (MQ=60)
AACCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCAAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGC < SRR4302547.6755166/94‑1 (MQ=60)
AGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCC > SRR4302547.1501692/1‑94 (MQ=60)
AGCCCCCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCC < SRR4302547.5422727/94‑1 (MQ=60)
CCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCG < SRR4302547.1018718/94‑1 (MQ=60)
CCCCGCCCCCGCTGCCATTAACCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCG < SRR4302547.246198/94‑1 (MQ=60)
CCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGAT > SRR4302547.4258686/1‑94 (MQ=60)
CCGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGAT < SRR4302547.894114/94‑1 (MQ=60)
CGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATG < SRR4302547.493976/94‑1 (MQ=60)
CGCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATG < SRR4302547.1805079/94‑1 (MQ=60)
GCCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGG > SRR4302547.1422313/1‑94 (MQ=60)
CCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGC < SRR4302547.4536357/94‑1 (MQ=60)
CCGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGC < SRR4302547.3055271/94‑1 (MQ=60)
CGCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCG < SRR4302547.4424912/94‑1 (MQ=60)
CGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCG > SRR4302547.6279918/1‑94 (MQ=60)
GCCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGT > SRR4302547.5136763/1‑94 (MQ=60)
CCGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTA > SRR4302547.6314709/1‑94 (MQ=60)
CCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTA < SRR4302547.4069923/94‑1 (MQ=60)
CGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAA > SRR4302547.326256/1‑94 (MQ=60)
CGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAA > SRR4302547.3565274/1‑94 (MQ=60)
CGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAA > SRR4302547.5553602/1‑94 (MQ=60)
CGCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAA < SRR4302547.3083515/94‑1 (MQ=60)
CGCTCCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAAACCAAGCCGGAATCGTGATTGAGCAGCGCAAAAGTGTATGCGCCGAacgcgtca > SRR4302547.3263827/1‑86 (MQ=60)
GCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAA > SRR4302547.437824/1‑94 (MQ=60)
GCTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAA > SRR4302547.2578373/1‑94 (MQ=60)
CTGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAA < SRR4302547.2770219/94‑1 (MQ=60)
CTGCCATTAATCCAGCAACCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAA < SRR4302547.4817674/94‑1 (MQ=60)
TGCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAA > SRR4302547.5971357/1‑94 (MQ=60)
GCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAAC < SRR4302547.1989669/94‑1 (MQ=60)
GCCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAAC > SRR4302547.2772061/1‑94 (MQ=60)
GCAATAAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAAC < SRR4302547.4220145/94‑1 (MQ=60)
CCATTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACC < SRR4302547.928337/94‑1 (MQ=60)
CCATTAACCCAGCAATCGGGGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACC < SRR4302547.6003309/94‑1 (MQ=60)
TTAATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCC > SRR4302547.5321474/1‑94 (MQ=60)
TTAATCCAGCAATCGGCGGGCAGGCCCAGCAGCCCAATGCGGTATAGGGATTGAACCGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCC > SRR4302547.3471300/1‑94 (MQ=42)
TAATCCAGCAATCGGCAGGCAGGTCTAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCG > SRR4302547.2200875/1‑94 (MQ=60)
TAAGCCAGCAATCGGGGGGCAGGTCAAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCG < SRR4302547.2266685/94‑1 (MQ=60)
AATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGT > SRR4302547.3157803/1‑94 (MQ=60)
ATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTA > SRR4302547.6641680/1‑94 (MQ=60)
ATCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGGAATAGGGAATGAGCAGCCCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGGA > SRR4302547.1093208/1‑94 (MQ=60)
TCCAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGAGCCGATGGCGTAAAAACCGCCGTAC > SRR4302547.2084008/1‑94 (MQ=60)
ccacaAATCGGCGGGCAGGTCCAGAAGCCAAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACC < SRR4302547.2726623/89‑1 (MQ=60)
CCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACC > SRR4302547.5061466/1‑94 (MQ=60)
CCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACAGCCGTACC > SRR4302547.3946042/1‑94 (MQ=60)
CAGCAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCC > SRR4302547.5735420/1‑94 (MQ=60)
CAGCAACCGGCGGGCAGTTCAAGAAGCCAAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCC < SRR4302547.4182280/94‑1 (MQ=60)
CAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAG > SRR4302547.2347705/1‑94 (MQ=60)
CAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAG > SRR4302547.6167935/1‑94 (MQ=60)
CAATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGAGATTTAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAG > SRR4302547.5904828/1‑94 (MQ=60)
CAATCGGCGGGCAGGTCCAAAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAG > SRR4302547.6276002/1‑94 (MQ=60)
AATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAGC > SRR4302547.6707698/1‑94 (MQ=60)
AATCGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAGC > SRR4302547.5995315/1‑94 (MQ=60)
CGGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACACCAGCACC > SRR4302547.2854978/1‑94 (MQ=60)
GGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAGCACCA < SRR4302547.54737/94‑1 (MQ=60)
GGCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAGCACCA < SRR4302547.286130/94‑1 (MQ=60)
GGCGGGCAGGGCCAGAAGCCCAAGCCGTAATAGCGATTGAGCAGCGCAAAAGTGGAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAGCAGCA > SRR4302547.4461356/1‑94 (MQ=60)
GCGGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAGCACCAG > SRR4302547.2702089/1‑94 (MQ=60)
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AGGGTAACGATCGCCAGATAGTCACCGCGCAAACGCAGCACCGGAAAA‑CCGAGCAGGAAGCCCGCCGCCGCTGCCATTAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAGCACCAG > NC_000913/3592516‑3592700
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |