Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,666,733 |
T→C |
H29R (CAC→CGC) |
yhjA ← |
putative cytochrome C peroxidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,666,733 | 0 | T | C | 85.6%
| 698.0
/ 98.3
| 271 | H29R (CAC→CGC) | yhjA | putative cytochrome C peroxidase |
| Reads supporting (aligned to +/- strand): ref base T (22/17); new base C (136/96); total (158/113) |
| Fisher's exact test for biased strand distribution p-value = 8.61e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.04e-01 |
Only 100 of 281 total aligned reads displayed.
CGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCT > NC_000913/3666641‑3666824
|
gCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCGCTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTNTTATCGTg > 1:5223191/1‑93 (MQ=255)
cATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCgg > 2:763216/1‑93 (MQ=255)
cATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCgg > 1:579402/1‑93 (MQ=255)
aTCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGt > 2:2884373/1‑93 (MQ=255)
tCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTa > 2:4053298/1‑93 (MQ=255)
tCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGAGGTa > 2:4501597/1‑93 (MQ=255)
cTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTAcc > 2:5482203/1‑93 (MQ=255)
tttCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACcaca < 1:2892651/93‑1 (MQ=255)
tCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACcacaca > 2:3715930/1‑93 (MQ=255)
tCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACcacaca > 1:1902906/1‑93 (MQ=255)
cgcgGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACAt < 2:2148360/93‑1 (MQ=255)
cgcgGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACAt < 2:1276906/93‑1 (MQ=255)
cgGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATaa > 1:1521722/1‑93 (MQ=255)
ggAGAAAGCCTAAAACCTTATTATTTTTACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAAc > 1:949392/1‑93 (MQ=255)
ggAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAAc > 1:2928490/1‑93 (MQ=255)
gagaAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAAcc > 1:5097209/1‑93 (MQ=255)
gagaAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAAcc > 1:5299152/1‑93 (MQ=255)
gagaAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAAcc > 2:302423/1‑93 (MQ=255)
agaAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCa < 1:3240901/93‑1 (MQ=255)
agaAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCa > 1:2512630/1‑93 (MQ=255)
agaAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCa > 1:2217397/1‑93 (MQ=255)
gaAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAg < 2:6180010/93‑1 (MQ=255)
gaAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAg > 2:3730876/1‑93 (MQ=255)
aaaGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGa < 1:3137381/93‑1 (MQ=255)
aaaGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGa > 1:3758560/1‑93 (MQ=255)
aaGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGAt > 1:812043/1‑93 (MQ=255)
aaGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGAt > 1:5687770/1‑93 (MQ=255)
aaGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGAt > 2:3309313/1‑93 (MQ=255)
aGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATa > 2:3235296/1‑93 (MQ=255)
ccTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAAc > 1:20452/1‑93 (MQ=255)
tAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAAccc < 2:512317/93‑1 (MQ=255)
tAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAAccc > 2:3485599/1‑93 (MQ=255)
tAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAAccc < 1:3587891/93‑1 (MQ=255)
aaaCCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTa > 2:1564427/1‑93 (MQ=255)
aaCCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTaa > 1:1956215/1‑93 (MQ=255)
aCCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTaaa > 1:1191629/1‑93 (MQ=255)
ccTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAAt > 2:5209551/1‑93 (MQ=255)
cTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATa > 1:495491/1‑93 (MQ=255)
ttattaTTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAg > 2:1247383/1‑93 (MQ=255)
tattatTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGc > 2:6412193/1‑93 (MQ=255)
attattTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCa > 1:3995437/1‑93 (MQ=255)
attattTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCa < 1:6389062/93‑1 (MQ=255)
ttttCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATc > 1:2747001/1‑93 (MQ=255)
cACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGa < 2:2402413/93‑1 (MQ=255)
cACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGa < 2:218862/93‑1 (MQ=255)
tGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACgc < 2:3081550/93‑1 (MQ=255)
tGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACgc > 2:1893654/1‑93 (MQ=255)
agcagATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACgccagc < 2:920245/93‑1 (MQ=255)
gcagATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACgccagcc < 1:1835875/93‑1 (MQ=255)
gcagATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACgccagcc > 2:849879/1‑93 (MQ=255)
gcagATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACgccagcc < 1:4730523/93‑1 (MQ=255)
cagATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACgccagcca < 1:5058321/93‑1 (MQ=255)
cagATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACgccagcca < 1:6233631/93‑1 (MQ=255)
agATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGccagccag < 2:5348870/93‑1 (MQ=255)
agATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGccagccag > 1:4227018/1‑93 (MQ=255)
gATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAgg < 2:744999/93‑1 (MQ=255)
gATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAgg > 2:1012791/1‑93 (MQ=255)
gATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAgg > 2:1436524/1‑93 (MQ=255)
gATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAgg > 1:669142/1‑93 (MQ=255)
aTGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGc < 1:3666041/93‑1 (MQ=255)
tGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGcc < 1:59914/93‑1 (MQ=255)
ccTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGa > 1:107218/1‑93 (MQ=255)
ccTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGa < 2:3616162/93‑1 (MQ=255)
cTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATATCCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGAt < 2:4194092/93‑1 (MQ=255)
tGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATc > 1:1414742/1‑93 (MQ=255)
tGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATc < 1:2352691/93‑1 (MQ=255)
cATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCgg < 2:1104970/93‑1 (MQ=255)
aTCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGt > 1:659993/1‑93 (MQ=255)
aTCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGt < 1:3542200/93‑1 (MQ=255)
aTCGGCCTGTTTACGGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGt < 1:730289/93‑1 (MQ=255)
tCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTa > 1:1044698/1‑93 (MQ=255)
tCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTa > 2:4113070/1‑93 (MQ=255)
cGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTaa < 2:2649174/93‑1 (MQ=255)
ggCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAAt > 2:2014450/1‑93 (MQ=255)
gCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATa < 2:4302733/93‑1 (MQ=255)
gCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATa < 2:4254317/93‑1 (MQ=255)
gCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATa > 1:4808519/1‑93 (MQ=255)
ccTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATAc > 2:2572516/1‑93 (MQ=255)
ccTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGCAATAc > 2:4540848/1‑93 (MQ=255)
ccTGTTTACTGCGTTTATTATCGCGGGACCACACATAACCAGATAACCCTAAATAGCAAATAGCAACGCCAGCCAGGCAGATCGCGGTAATag > 2:4355812/1‑92 (MQ=255)
cTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATACCCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACg < 2:4945634/93‑1 (MQ=255)
gTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTg < 1:5567671/93‑1 (MQ=255)
tttACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTga < 1:6438366/93‑1 (MQ=255)
ttACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCAAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTgag < 1:4513788/93‑1 (MQ=255)
tACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTgaga > 2:6360214/1‑93 (MQ=255)
aCTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGAc < 1:130256/93‑1 (MQ=255)
cTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGAcc < 2:5961010/93‑1 (MQ=255)
cTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGAcc > 1:6546687/1‑93 (MQ=255)
gCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCAt > 1:6174071/1‑93 (MQ=255)
cGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCAtt < 2:3839266/93‑1 (MQ=255)
cGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCAtt < 2:5448567/93‑1 (MQ=255)
gTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCAttt < 2:1357126/93‑1 (MQ=255)
tttATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCAtttt > 1:4052070/1‑93 (MQ=255)
tttATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCAtttt > 1:4371213/1‑93 (MQ=255)
attatCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCat < 2:5830623/93‑1 (MQ=255)
ttatCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCatt < 2:2487754/93‑1 (MQ=255)
atCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCattat > 2:2696551/1‑93 (MQ=255)
tCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCTGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCattatt < 2:4668120/93‑1 (MQ=255)
tCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCattatt < 1:1547461/93‑1 (MQ=255)
tCGCGGTACAACACATAACCAGATAACCCTAAATAGCAACTCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCattatt < 1:4083908/93‑1 (MQ=255)
|
CGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCT > NC_000913/3666641‑3666824
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTC > NC_000913/3666640‑3666826
|
TCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGC > SRR4302547.4707897/1‑94 (MQ=60)
TCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGC > SRR4302547.816127/1‑94 (MQ=60)
TCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGC < SRR4302547.2516179/94‑1 (MQ=60)
CGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCGCTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTNTTATCGTG > SRR4302547.5330675/1‑94 (MQ=60)
CGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCCCTGACAGCAGTTGCCTGATCACCGGCCTGTTTACTGGGTTTATTTTCGCG > SRR4302547.5745401/1‑94 (MQ=60)
CGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTG > SRR4302547.3824076/1‑94 (MQ=60)
GCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGG > SRR4302547.589794/1‑94 (MQ=60)
CATCATTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGT > SRR4302547.4775442/1‑94 (MQ=60)
ATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTA > SRR4302547.3494255/1‑94 (MQ=60)
CTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCA < SRR4302547.5391046/94‑1 (MQ=60)
TTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCTGATGCCTGATCATCGGCCTGTGTACTGCGTTTATTATCGCGGTACCACA < SRR4302547.6336420/94‑1 (MQ=60)
TTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACAC < SRR4302547.2950344/94‑1 (MQ=60)
TTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACA > SRR4302547.1940551/1‑94 (MQ=60)
TCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACAT < SRR4302547.2615729/94‑1 (MQ=60)
TCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACAT > SRR4302547.2538014/1‑94 (MQ=60)
CGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATA < SRR4302547.4303698/94‑1 (MQ=60)
CGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATA > SRR4302547.4908540/1‑94 (MQ=60)
CGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATA > SRR4302547.5365198/1‑94 (MQ=60)
GCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAA > SRR4302547.1552021/1‑94 (MQ=60)
GCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCAGTACCACACATAA < SRR4302547.2303525/94‑1 (MQ=60)
CGGAGAAAGCCTAAAACCTTATTATTTTTACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAAC > SRR4302547.967833/1‑94 (MQ=60)
CGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAAC > SRR4302547.2839035/1‑94 (MQ=60)
CGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAAC > SRR4302547.2986877/1‑94 (MQ=60)
GGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACC > SRR4302547.5202307/1‑94 (MQ=60)
GGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACC > SRR4302547.5408487/1‑94 (MQ=60)
GAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCA > SRR4302547.2262062/1‑94 (MQ=60)
GAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCA > SRR4302547.2563417/1‑94 (MQ=60)
AGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAG < SRR4302547.3305589/94‑1 (MQ=60)
GAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGA > SRR4302547.3835251/1‑94 (MQ=60)
AAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGAT > SRR4302547.827442/1‑94 (MQ=60)
AAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGAT > SRR4302547.4874873/1‑94 (MQ=60)
AAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGAT < SRR4302547.3199694/94‑1 (MQ=60)
AAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGAT > SRR4302547.5805215/1‑94 (MQ=60)
AAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATA < SRR4302547.3724926/94‑1 (MQ=60)
AAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATA > SRR4302547.923808/1‑94 (MQ=60)
AAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATA < SRR4302547.5195331/94‑1 (MQ=60)
GCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAAC > SRR4302547.20850/1‑94 (MQ=60)
CCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACC > SRR4302547.6310304/1‑94 (MQ=60)
CTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCC > SRR4302547.4151015/1‑94 (MQ=60)
CTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCC > SRR4302547.4102209/1‑94 (MQ=60)
TAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCT < SRR4302547.3661085/94‑1 (MQ=60)
AAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAA > SRR4302547.1995036/1‑94 (MQ=60)
AAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAA > SRR4302547.2930138/1‑94 (MQ=60)
AACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAA > SRR4302547.1644904/1‑94 (MQ=60)
AACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAA > SRR4302547.1990475/1‑94 (MQ=60)
AACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAA > SRR4302547.1215677/1‑94 (MQ=60)
ACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAAT > SRR4302547.6447063/1‑94 (MQ=60)
CCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATA > SRR4302547.504529/1‑94 (MQ=60)
CCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATA > SRR4302547.6377443/1‑94 (MQ=60)
CTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAC > SRR4302547.4384876/1‑94 (MQ=60)
CTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAG > SRR4302547.192267/1‑94 (MQ=60)
CTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAG > SRR4302547.108708/1‑94 (MQ=60)
TTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGC > SRR4302547.1168386/1‑94 (MQ=60)
TATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCA > SRR4302547.4076663/1‑94 (MQ=60)
TATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCA < SRR4302547.5062298/94‑1 (MQ=60)
ATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAA > SRR4302547.6650385/1‑94 (MQ=60)
ATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAA < SRR4302547.6522370/94‑1 (MQ=60)
TTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAA < SRR4302547.3625914/94‑1 (MQ=60)
TATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAAT > SRR4302547.5728290/1‑94 (MQ=60)
TTTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATC > SRR4302547.2802086/1‑94 (MQ=60)
ATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATC > SRR4302547.3082941/1‑94 (MQ=60)
ATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATC < SRR4302547.6654587/94‑1 (MQ=60)
TTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCG < SRR4302547.5977742/94‑1 (MQ=60)
TTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGC < SRR4302547.6283715/94‑1 (MQ=60)
TTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGC < SRR4302547.2297666/94‑1 (MQ=60)
TTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTCTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCG < SRR4302547.6693189/94‑1 (MQ=60)
ACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACG > SRR4302547.934768/1‑94 (MQ=60)
CTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGGACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGC > SRR4302547.1549032/1‑94 (MQ=60)
ACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAG > SRR4302547.414046/1‑94 (MQ=60)
AGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCC > SRR4302547.811993/1‑94 (MQ=60)
AGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCC > SRR4302547.1897617/1‑94 (MQ=60)
GCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCTACGCCAGCCA < SRR4302547.6527363/94‑1 (MQ=60)
GCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCA < SRR4302547.1872167/94‑1 (MQ=60)
GCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCA < SRR4302547.4828556/94‑1 (MQ=60)
GCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCA < SRR4302547.418537/94‑1 (MQ=60)
CAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAG < SRR4302547.5162716/94‑1 (MQ=60)
CAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAG > SRR4302547.329561/1‑94 (MQ=60)
CAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAG < SRR4302547.6363130/94‑1 (MQ=60)
CAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAG > SRR4302547.4313411/1‑94 (MQ=60)
CAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAG > SRR4302547.2033545/1‑94 (MQ=60)
AGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGG > SRR4302547.4633885/1‑94 (MQ=60)
AGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGG > SRR4302547.5299917/1‑94 (MQ=60)
AGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGG > SRR4302547.681458/1‑94 (MQ=60)
GATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGC > SRR4302547.1400428/1‑94 (MQ=60)
ATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCC < SRR4302547.1133858/94‑1 (MQ=60)
ATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCC < SRR4302547.3740822/94‑1 (MQ=60)
ATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCC < SRR4302547.2770133/94‑1 (MQ=60)
TGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCG > SRR4302547.3241625/1‑94 (MQ=60)
TGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCG < SRR4302547.61043/94‑1 (MQ=60)
TGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCG < SRR4302547.4003517/94‑1 (MQ=60)
GCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGA > SRR4302547.109179/1‑94 (MQ=60)
GCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGA > SRR4302547.5276924/1‑94 (MQ=60)
CCTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGAT > SRR4302547.3926464/1‑94 (MQ=60)
CTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGCTC < SRR4302547.6686235/94‑1 (MQ=60)
CTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATC > SRR4302547.1443033/1‑94 (MQ=60)
CTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATC > SRR4302547.6129763/1‑94 (MQ=60)
CTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATC > SRR4302547.698561/1‑94 (MQ=60)
CTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATC > SRR4302547.4582291/1‑94 (MQ=60)
CTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATC > SRR4302547.2436190/1‑94 (MQ=60)
CTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATC > SRR4302547.4092236/1‑94 (MQ=60)
CTGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATC < SRR4302547.316956/94‑1 (MQ=60)
TGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCG < SRR4302547.2400363/94‑1 (MQ=60)
TGAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCG > SRR4302547.1250420/1‑94 (MQ=60)
GAACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGC < SRR4302547.1953999/94‑1 (MQ=60)
ACATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGG < SRR4302547.1012502/94‑1 (MQ=60)
CATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGT > SRR4302547.672149/1‑94 (MQ=60)
CATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGT > SRR4302547.3647255/1‑94 (MQ=60)
ATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTA > SRR4302547.1065325/1‑94 (MQ=60)
ATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTA > SRR4302547.1284416/1‑94 (MQ=60)
ATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTA < SRR4302547.1552390/94‑1 (MQ=60)
ATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTA < SRR4302547.3614506/94‑1 (MQ=60)
ATCGGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCACGCCGATCGCGGTA > SRR4302547.4861664/1‑94 (MQ=60)
ATCGGCCTGTTTACGGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTA < SRR4302547.743920/94‑1 (MQ=60)
CGGTCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATACCCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAAT < SRR4302547.5842396/94‑1 (MQ=60)
CGGCCTGTTTACTGCGTTTATTACCGCGGTACCACACATAACCAGATAACCCTAAATAGGAAATCGCGACGCCAGCCAGGCCGATCGCGGTAAA < SRR4302547.5753625/94‑1 (MQ=60)
GGCCTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATA > SRR4302547.4908187/1‑94 (MQ=60)
CTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGT > SRR4302547.5641755/1‑94 (MQ=60)
CTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGT < SRR4302547.5955286/94‑1 (MQ=60)
CTGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGT < SRR4302547.202721/94‑1 (MQ=60)
TGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTG > SRR4302547.2196972/1‑94 (MQ=60)
TGTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTG > SRR4302547.3312683/1‑94 (MQ=60)
GTTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGA < SRR4302547.5682480/94‑1 (MQ=60)
TTTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAG < SRR4302547.6572542/94‑1 (MQ=60)
TTGACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAG < SRR4302547.6762299/94‑1 (MQ=60)
TTACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCAAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGA < SRR4302547.4607046/94‑1 (MQ=60)
TACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGAC < SRR4302547.1359051/94‑1 (MQ=60)
ACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACC < SRR4302547.132609/94‑1 (MQ=60)
ACTGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACC > SRR4302547.6682940/1‑94 (MQ=60)
CTGCGTTTATTATCGCGGTACCACACATAACAAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCA > SRR4302547.6741089/1‑94 (MQ=60)
TGCGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCAT > SRR4302547.6302228/1‑94 (MQ=60)
GCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATT < SRR4302547.971277/94‑1 (MQ=60)
CGTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTT > SRR4302547.491551/1‑94 (MQ=60)
GTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTT > SRR4302547.4134360/1‑94 (MQ=60)
GTTTATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTT > SRR4302547.4461014/1‑94 (MQ=60)
TATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCAT < SRR4302547.2966530/94‑1 (MQ=60)
TATTATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCAT > SRR4302547.5854787/1‑94 (MQ=60)
ATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATT < SRR4302547.3682725/94‑1 (MQ=60)
TTATCGTGGTACCGCACATAACCAGATAACCCTAAATAGCAAATCGTGACGCCAGCCAGGCGGATCGCGGTAATACGTGAGACCATTTTCATTA < SRR4302547.5676492/94‑1 (MQ=60)
TATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTAT < SRR4302547.5182456/94‑1 (MQ=60)
ATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATT < SRR4302547.68861/94‑1 (MQ=60)
ATCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATT > SRR4302547.4556870/1‑94 (MQ=60)
TCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTC < SRR4302547.1700097/94‑1 (MQ=60)
TCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTC < SRR4302547.1578269/94‑1 (MQ=60)
TCGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTC < SRR4302547.1447355/94‑1 (MQ=60)
TCGCGGTACAACACATAACCAGATAACCCTAAATAGCAACTCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTC < SRR4302547.4166907/94‑1 (MQ=60)
CGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCT < SRR4302547.181999/94‑1 (MQ=60)
CGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCT < SRR4302547.3563962/94‑1 (MQ=60)
CGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCT > SRR4302547.883965/1‑94 (MQ=60)
CGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCT < SRR4302547.3883855/94‑1 (MQ=60)
CGCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCT < SRR4302547.2838075/94‑1 (MQ=60)
GCGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTT < SRR4302547.6686090/94‑1 (MQ=60)
CGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTC > SRR4302547.3586743/1‑94 (MQ=60)
|
TCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCGTTTATTATCGTGGTACCACACATAACCAGATAACCCTAAATAGCAAATCGCGACGCCAGCCAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTC > NC_000913/3666640‑3666826
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
