Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,873,627 |
Δ1 bp |
coding (506/672 nt) |
yidX → |
putative replicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,873,625 | 0 | G | . | 99.7%
| 1354.6
/ ‑3.5
| 287 | coding (504/672 nt) | yidX | putative replicase |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base . (176/110); total (177/110) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 |
Only 100 of 300 total aligned reads displayed.
AAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTA > NC_000913/3873534‑3873713
|
aaaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCgga > 2:5219491/1‑92 (MQ=255)
tAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCggatgg < 2:5103524/93‑5 (MQ=255)
tAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCggatgg < 2:6486078/93‑5 (MQ=255)
aaaCATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGgtgt > 2:918602/1‑93 (MQ=255)
aaaCATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGgtgt > 1:4084850/1‑93 (MQ=255)
aaaCATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGgtgt < 2:3254512/93‑1 (MQ=255)
aaCATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGtt > 2:18832/1‑93 (MQ=255)
aaCATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGtt < 2:1473925/93‑1 (MQ=255)
cATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTc > 2:6297359/1‑93 (MQ=255)
cATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTc > 2:3897668/1‑93 (MQ=255)
cATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTc < 1:1548130/93‑1 (MQ=255)
tGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCg > 2:4210894/1‑93 (MQ=255)
ggATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgc < 2:6622322/93‑1 (MQ=255)
aTTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgcag < 1:3694986/93‑1 (MQ=255)
aTTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgcag > 1:576246/1‑93 (MQ=255)
aTTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgcag < 2:5075306/93‑1 (MQ=255)
aCTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCAt > 2:3407380/1‑93 (MQ=255)
aCTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCAt > 2:5664622/1‑93 (MQ=255)
cTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCAtt < 2:5395354/93‑1 (MQ=255)
tCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTa < 2:3206012/93‑1 (MQ=255)
aaaGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACt < 1:4161945/93‑1 (MQ=255)
aaaGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACt > 1:4710214/1‑93 (MQ=255)
aaGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTg > 2:1375811/1‑93 (MQ=255)
ggTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGcc < 1:2870485/93‑1 (MQ=255)
ggTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGcc > 1:4658622/1‑93 (MQ=255)
ggTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGcc > 2:2268425/1‑93 (MQ=255)
gTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGCCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCa < 2:3013520/93‑1 (MQ=255)
tGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAg < 2:73352/93‑1 (MQ=255)
gATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGt > 1:4862241/1‑93 (MQ=255)
gATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGt > 1:1254182/1‑93 (MQ=255)
ggCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGAc < 1:725845/93‑1 (MQ=255)
ggCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGAc > 2:2063091/1‑93 (MQ=255)
gTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGt < 2:2132526/93‑1 (MQ=255)
ttCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGtt < 1:5568324/93‑1 (MQ=255)
tCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTa > 2:3512506/1‑93 (MQ=255)
cTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTAc < 2:5763100/93‑1 (MQ=255)
cTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTAc > 1:2789979/1‑93 (MQ=255)
tACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACg > 1:3236785/1‑93 (MQ=255)
tACCATCCATTTAAAGTGCGATATTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACg > 1:752246/1‑93 (MQ=255)
aCCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGc > 1:2485343/1‑93 (MQ=255)
ccatccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCt > 2:5487011/1‑93 (MQ=255)
ccatccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCt > 2:3663029/1‑93 (MQ=255)
tccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGa > 2:5608266/1‑93 (MQ=255)
ccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAc < 1:5234889/93‑1 (MQ=255)
ccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAc > 1:5790228/1‑93 (MQ=255)
ccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAc < 1:4787576/93‑1 (MQ=255)
catTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAca < 2:440568/93‑1 (MQ=255)
catTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAca < 1:2016366/93‑1 (MQ=255)
atTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcat > 1:4329271/1‑93 (MQ=255)
tttAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatc > 1:4243661/1‑93 (MQ=255)
tttAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatc > 1:1096977/1‑93 (MQ=255)
ttAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatca < 2:3736361/93‑1 (MQ=255)
ttAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatca > 2:5320140/1‑93 (MQ=255)
ttAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatca < 2:1708865/93‑1 (MQ=255)
tAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatcat < 1:1207021/93‑1 (MQ=255)
aaGTGCGATTTTATGAATACCATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTa < 1:6102767/93‑1 (MQ=255)
aGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTAc < 2:1801210/93‑1 (MQ=255)
aGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTAc < 1:3558800/93‑1 (MQ=255)
tGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTg < 2:2525378/93‑1 (MQ=255)
tGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTg < 2:2827320/93‑1 (MQ=255)
gCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGc < 1:1715504/93‑1 (MQ=255)
gATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCAc > 2:4668532/1‑93 (MQ=255)
gATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCAc > 2:1929803/1‑93 (MQ=255)
gATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCAc > 1:1504845/1‑93 (MQ=255)
ttttATGAATACTATTCACTCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCg > 1:6502328/1‑93 (MQ=255)
tttATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGc < 1:668020/93‑1 (MQ=255)
ttATGAATACTATTCTCCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCt < 2:2906475/93‑1 (MQ=255)
tATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTg > 1:1836626/1‑93 (MQ=255)
tATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTg < 1:1599509/93‑1 (MQ=255)
tATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTCCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTg < 2:4788978/93‑1 (MQ=255)
aTGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGc > 2:6253653/1‑93 (MQ=255)
aTGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGc < 1:2034241/93‑1 (MQ=255)
aTGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGc < 1:2199495/93‑1 (MQ=255)
tGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCa > 2:6166631/1‑93 (MQ=255)
gAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCaa > 2:1525840/1‑93 (MQ=255)
gAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCaa > 1:5953608/1‑93 (MQ=255)
aaTACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAAt < 2:2378588/93‑1 (MQ=255)
aCTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTc < 2:2697484/93‑1 (MQ=255)
aCTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTc > 2:5038542/1‑93 (MQ=255)
tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTg > 2:1508920/1‑93 (MQ=255)
tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTg > 1:69573/1‑93 (MQ=255)
tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTg > 1:3930975/1‑93 (MQ=255)
ttCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGt < 2:4622707/93‑1 (MQ=255)
ttCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGt > 1:6301734/1‑93 (MQ=255)
cACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTg > 1:6602588/1‑93 (MQ=255)
aCCCAGAGGCATTCC‑GTATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACTCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGt < 2:6104250/93‑1 (MQ=255)
aCCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGt > 1:6411762/1‑93 (MQ=255)
aCCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGt < 2:458964/93‑1 (MQ=255)
ccAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGtat > 2:4978990/1‑93 (MQ=255)
ccAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGtat > 1:5056771/1‑93 (MQ=255)
ccAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGtat > 2:4749332/1‑93 (MQ=255)
ccAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGtat > 2:1145915/1‑93 (MQ=255)
agagGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTatat < 1:951242/93‑1 (MQ=255)
gagGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATg > 2:6030038/1‑93 (MQ=255)
gagGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATg > 1:4565776/1‑93 (MQ=255)
gagGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATg > 2:6408598/1‑93 (MQ=255)
agGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGc > 2:4908405/1‑93 (MQ=255)
gCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGAc < 2:1182245/40‑1 (MQ=255)
aTTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTa > 1:2671763/1‑93 (MQ=255)
aTTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTa > 2:3572809/1‑93 (MQ=255)
|
AAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTA > NC_000913/3873534‑3873713
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAAT > NC_000913/3873534‑3873720
|
AAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGA < SRR4302547.4441528/94‑1 (MQ=60)
AATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATG < SRR4302547.697458/94‑1 (MQ=60)
TAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGT > SRR4302547.5275327/1‑94 (MQ=60)
AAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGT < SRR4302547.4862557/94‑1 (MQ=60)
AAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGT < SRR4302547.4931625/94‑1 (MQ=60)
AAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGT > SRR4302547.4167877/1‑94 (MQ=60)
AAACATGGATTACTCAAAGGTGATGGCGTTCTACCATACATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTT > SRR4302547.6290782/1‑94 (MQ=60)
AACATGGATCACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTT > SRR4302547.4040252/1‑94 (MQ=60)
ACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCGCCCAGAGGCATTCC‑GGATGGTGTTTC < SRR4302547.6468305/94‑1 (MQ=60)
ACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTC > SRR4302547.1267334/1‑94 (MQ=60)
CATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCC < SRR4302547.2755459/94‑1 (MQ=60)
CATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCC < SRR4302547.6742052/94‑1 (MQ=60)
CATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCC > SRR4302547.5757425/1‑94 (MQ=60)
CATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCC < SRR4302547.1578952/94‑1 (MQ=60)
ATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCG > SRR4302547.6549554/1‑94 (MQ=60)
ATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCG < SRR4302547.6428476/94‑1 (MQ=60)
ATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCG > SRR4302547.1616935/1‑94 (MQ=60)
TGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGC < SRR4302547.4199308/94‑1 (MQ=60)
GGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCA < SRR4302547.3400301/94‑1 (MQ=60)
GATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAGTACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAG > SRR4302547.4074366/1‑94 (MQ=60)
GATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAG > SRR4302547.586579/1‑94 (MQ=60)
GATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAG > SRR4302547.5324722/1‑94 (MQ=60)
ATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGC < SRR4302547.3770413/94‑1 (MQ=60)
TTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCA > SRR4302547.76294/1‑94 (MQ=60)
TACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGCTTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGGGTTTCCGCAGCAT > SRR4302547.742425/1‑94 (MQ=60)
ACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATT > SRR4302547.2151229/1‑94 (MQ=60)
CTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTA > SRR4302547.1727558/1‑94 (MQ=60)
TCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTAC < SRR4302547.3077548/94‑1 (MQ=60)
TCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTAC > SRR4302547.4748411/1‑94 (MQ=60)
CAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACT < SRR4302547.1799251/94‑1 (MQ=60)
CAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACT > SRR4302547.4807744/1‑94 (MQ=60)
AAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTG < SRR4302547.4246731/94‑1 (MQ=60)
AAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTG > SRR4302547.3744848/1‑94 (MQ=60)
AAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGC > SRR4302547.862695/1‑94 (MQ=60)
AAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGC > SRR4302547.4862907/1‑94 (MQ=60)
AGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCC > SRR4302547.4755102/1‑94 (MQ=60)
GGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCA < SRR4302547.2927819/94‑1 (MQ=60)
GTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAG > SRR4302547.1398898/1‑94 (MQ=60)
GTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAG < SRR4302547.1563775/94‑1 (MQ=60)
TGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGT > SRR4302547.4962996/1‑94 (MQ=60)
TGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGT < SRR4302547.684608/94‑1 (MQ=60)
TGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGT > SRR4302547.1279475/1‑94 (MQ=60)
TGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGT > SRR4302547.4878581/1‑94 (MQ=60)
GATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTG > SRR4302547.2005014/1‑94 (MQ=60)
TGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGAC < SRR4302547.1588721/94‑1 (MQ=60)
GGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACT < SRR4302547.739376/94‑1 (MQ=60)
GGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACT < SRR4302547.203094/94‑1 (MQ=60)
GCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTG > SRR4302547.475696/1‑94 (MQ=60)
GCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTG < SRR4302547.3455842/94‑1 (MQ=60)
GCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTG < SRR4302547.6729181/94‑1 (MQ=60)
GCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTG < SRR4302547.648605/94‑1 (MQ=60)
CGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGT > SRR4302547.2889099/1‑94 (MQ=60)
GTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTT < SRR4302547.4798039/94‑1 (MQ=60)
TTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTA < SRR4302547.5683141/94‑1 (MQ=60)
TCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTAC > SRR4302547.2845853/1‑94 (MQ=60)
CTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACG > SRR4302547.3301392/1‑94 (MQ=60)
CTACCATCCATTTAAAGTGCGATATTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACG > SRR4302547.766432/1‑94 (MQ=60)
TATCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGC < SRR4302547.1757593/94‑1 (MQ=60)
TACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGC < SRR4302547.4347459/94‑1 (MQ=60)
TACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGC > SRR4302547.4703849/1‑94 (MQ=60)
TACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGC > SRR4302547.2535558/1‑94 (MQ=60)
CCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTG < SRR4302547.2072651/94‑1 (MQ=60)
CCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTG > SRR4302547.2418183/1‑94 (MQ=60)
CATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGG > SRR4302547.753564/1‑94 (MQ=60)
TCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAC > SRR4302547.5909997/1‑94 (MQ=60)
CCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACA < SRR4302547.5342650/94‑1 (MQ=60)
CCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACA < SRR4302547.4886772/94‑1 (MQ=60)
CATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACAT > SRR4302547.4418357/1‑94 (MQ=60)
CATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACAT < SRR4302547.2056485/94‑1 (MQ=60)
CATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACAT < SRR4302547.6715059/94‑1 (MQ=60)
CATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACAT > SRR4302547.3926617/1‑94 (MQ=60)
ATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATC > SRR4302547.1118984/1‑94 (MQ=60)
ATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATC > SRR4302547.4330449/1‑94 (MQ=60)
TTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCA < SRR4302547.5986156/94‑1 (MQ=60)
TAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATT < SRR4302547.1231381/94‑1 (MQ=60)
AAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTAC > SRR4302547.2591512/1‑94 (MQ=60)
AAGTGCGATTTTATGAATACCATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTAC < SRR4302547.6229356/94‑1 (MQ=60)
AGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACT < SRR4302547.5896558/94‑1 (MQ=60)
AGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACT < SRR4302547.3858659/94‑1 (MQ=60)
AGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACT < SRR4302547.3631428/94‑1 (MQ=60)
GCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCA < SRR4302547.1749233/94‑1 (MQ=60)
CGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCAC > SRR4302547.1534846/1‑94 (MQ=60)
ATTTTATGAATACTATTCACTCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCG > SRR4302547.6637675/1‑94 (MQ=60)
ATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCG > SRR4302547.121581/1‑94 (MQ=60)
ATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCG < SRR4302547.4896058/94‑1 (MQ=60)
ATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCG > SRR4302547.1441656/1‑94 (MQ=60)
TTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGC > SRR4302547.4386767/1‑94 (MQ=60)
TTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGC > SRR4302547.2156343/1‑94 (MQ=60)
TTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGC > SRR4302547.2056911/1‑94 (MQ=60)
TTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCT < SRR4302547.680322/94‑1 (MQ=60)
TTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTG < SRR4302547.5994164/94‑1 (MQ=60)
TTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTG > SRR4302547.1872933/1‑94 (MQ=60)
TATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGC < SRR4302547.1631241/94‑1 (MQ=60)
ATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCA < SRR4302547.2243681/94‑1 (MQ=60)
ATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCA < SRR4302547.2074771/94‑1 (MQ=60)
TGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAA > SRR4302547.6077073/1‑94 (MQ=60)
GAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAAT > SRR4302547.6079774/1‑94 (MQ=60)
AATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATT < SRR4302547.5898733/94‑1 (MQ=60)
ATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTT > SRR4302547.1246227/1‑94 (MQ=60)
TACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTC < SRR4302547.5658838/94‑1 (MQ=60)
ACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCT > SRR4302547.4643258/1‑94 (MQ=60)
CTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTG > SRR4302547.70873/1‑94 (MQ=60)
CTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTG > SRR4302547.4010926/1‑94 (MQ=60)
TATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGG > SRR4302547.2433624/1‑94 (MQ=60)
TATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGG > SRR4302547.5084998/1‑94 (MQ=60)
ATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGT > SRR4302547.6432723/1‑94 (MQ=60)
ATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGT < SRR4302547.5584581/94‑1 (MQ=60)
TTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTT < SRR4302547.4237897/94‑1 (MQ=60)
TCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTG > SRR4302547.328100/1‑94 (MQ=60)
TCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTG < SRR4302547.4300020/94‑1 (MQ=60)
TCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTG > SRR4302547.6740022/1‑94 (MQ=60)
CACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGT > SRR4302547.6545479/1‑94 (MQ=60)
CCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTAT > SRR4302547.6080067/1‑94 (MQ=60)
CCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTAT > SRR4302547.3723493/1‑94 (MQ=60)
CCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTAT > SRR4302547.840085/1‑94 (MQ=60)
CCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTAT > SRR4302547.5161140/1‑94 (MQ=60)
CAAGAGGCATTCCGGG‑TGGAGTTTCCGCACCATTACTTCCAGTGACTGTTACGCTGGACATCATTACTGCACAGCTGCAATTCTTGGTTGTTTA > SRR4302547.728618/1‑94 (MQ=60)
CAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATAT < SRR4302547.2783099/94‑1 (MQ=60)
CAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATAT < SRR4302547.2537959/94‑1 (MQ=60)
CAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATAT > SRR4302547.6550173/1‑94 (MQ=60)
CAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATAT < SRR4302547.4266207/94‑1 (MQ=60)
AGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATG < SRR4302547.969711/94‑1 (MQ=60)
AGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATG > SRR4302547.5745489/1‑94 (MQ=60)
AGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATG < SRR4302547.5037801/94‑1 (MQ=60)
AGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATG > SRR4302547.4660241/1‑94 (MQ=60)
AGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGATGTATATGCA > SRR4302547.1718104/1‑94 (MQ=60)
GGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTaatgtcaagatcggaagagcgtcgtgtagggaaagagtgtagatctcggtgg > SRR4302547.1206125/1‑42 (MQ=60)
GGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAG < SRR4302547.6752291/94‑1 (MQ=60)
GCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGT < SRR4302547.2879916/94‑1 (MQ=60)
CATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTA > SRR4302547.2725435/1‑94 (MQ=60)
ATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAA < SRR4302547.1544926/94‑1 (MQ=60)
TCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAAC > SRR4302547.6575927/1‑94 (MQ=60)
TCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAAC > SRR4302547.4581723/1‑94 (MQ=60)
CCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACC < SRR4302547.1375989/94‑1 (MQ=60)
CGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCA < SRR4302547.697134/94‑1 (MQ=60)
GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAA > SRR4302547.1330798/1‑94 (MQ=60)
GATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAAT < SRR4302547.397067/94‑1 (MQ=60)
GATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAAT < SRR4302547.1985619/94‑1 (MQ=60)
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AAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAAT > NC_000913/3873534‑3873720
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
