Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,889,795 |
G→A |
A184A (GCG→GCA) |
yidY → |
putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,889,795 | 0 | G | A | 91.9%
| 809.5
/ 39.4
| 246 | A184A (GCG→GCA) | yidY | putative transport protein |
| Reads supporting (aligned to +/- strand): ref base G (10/10); new base A (122/104); total (132/114) |
| Fisher's exact test for biased strand distribution p-value = 8.17e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.17e-01 |
Only 100 of 265 total aligned reads displayed.
TTCCCGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTCAG > NC_000913/3889703‑3889884
|
cccGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCagcagc < 2:907426/93‑1 (MQ=255)
cccGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCagcagc < 2:1434906/93‑1 (MQ=255)
cccGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCagcagc < 1:987692/93‑1 (MQ=255)
ccGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGcc > 1:272139/1‑93 (MQ=255)
gTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGcccc < 1:900322/93‑1 (MQ=255)
gTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGcccc > 2:547380/1‑93 (MQ=255)
gTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGcccc < 1:5711925/93‑1 (MQ=255)
tGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGccccc > 2:6062235/1‑93 (MQ=255)
tGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGccccc < 2:5617870/93‑1 (MQ=255)
gCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGc > 2:5270528/1‑93 (MQ=255)
gCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGc < 1:6410870/93‑1 (MQ=255)
gCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGc > 1:4795929/1‑93 (MQ=255)
cAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCa < 1:3351714/93‑1 (MQ=255)
agagTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAg > 1:3159688/1‑93 (MQ=255)
gagTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGc > 1:6507525/1‑93 (MQ=255)
gagTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGc > 1:2468005/1‑93 (MQ=255)
gTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCtt < 2:5314034/93‑1 (MQ=255)
tttCTGTGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCGCGCAGCTTCGGa < 2:1602216/92‑1 (MQ=255)
tttCTGGGTGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGa < 1:1267086/92‑1 (MQ=255)
gTTCTGGGTGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGa < 2:316879/93‑1 (MQ=255)
tCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATa > 2:6287091/1‑93 (MQ=255)
tCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATa < 1:1373316/93‑1 (MQ=255)
tGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATaaa > 2:6619336/1‑93 (MQ=255)
tGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATaaa > 1:5120793/1‑93 (MQ=255)
ggATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCAc < 2:5256359/92‑1 (MQ=255)
ggtGGCAATTATGGGCATTGGGGTACTTAATGTGTTTTTTTTTAATTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACg < 2:3031799/91‑1 (MQ=255)
gtGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACga < 1:1897363/92‑1 (MQ=255)
aTGGCAATGATGGGCATCGCGGTACTTATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACga < 1:3834948/93‑1 (MQ=255)
aTGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACga > 2:3889401/1‑93 (MQ=255)
aTGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACga < 1:2022630/93‑1 (MQ=255)
ggCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACgaga < 1:5943386/93‑1 (MQ=255)
gCAATGATGGGCATCGCGGTACTGCTGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGaa > 1:6403505/1‑93 (MQ=255)
gCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGaa > 1:3523145/1‑93 (MQ=255)
aaTGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGaaaa < 2:5957533/93‑1 (MQ=255)
atgatgGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAAt < 1:1058696/93‑1 (MQ=255)
tgatgGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATa > 1:1449131/1‑93 (MQ=255)
gatgGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAACCGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAg < 1:5756782/93‑1 (MQ=255)
gatgGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAg < 1:5917967/93‑1 (MQ=255)
atgGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGc > 1:6269622/1‑93 (MQ=255)
gCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGt < 1:4936713/93‑1 (MQ=255)
cATCGCGGTACTGATGTTGCCTTTGTTTATTTTAAAAGAAACGTGCCCAGCATCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTc < 1:944206/93‑1 (MQ=255)
tCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCgc > 1:4840840/1‑93 (MQ=255)
tCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCgc < 2:1029257/93‑1 (MQ=255)
gcgGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCgctg > 2:5373613/1‑93 (MQ=255)
cgGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCgctgc < 1:2522596/93‑1 (MQ=255)
cgGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCgctgc < 2:5736068/93‑1 (MQ=255)
cgGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCgctgc > 2:2614020/1‑93 (MQ=255)
cgGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCgctgc > 2:2028468/1‑93 (MQ=255)
cgGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCgctgc < 1:1030689/93‑1 (MQ=255)
ggTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCgctgct < 1:2317408/93‑1 (MQ=255)
gTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCtt > 1:5554426/1‑93 (MQ=255)
gTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCtt > 1:5245329/1‑93 (MQ=255)
tACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTa > 1:3660834/1‑93 (MQ=255)
tACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTa < 2:1832444/93‑1 (MQ=255)
aCTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTaa > 2:1246047/1‑93 (MQ=255)
cTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAAc < 1:3572781/93‑1 (MQ=255)
gATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCg > 2:841302/1‑93 (MQ=255)
gATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCg < 2:4788844/93‑1 (MQ=255)
gATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCg < 1:5305382/93‑1 (MQ=255)
aTGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGt > 2:46999/1‑93 (MQ=255)
tgttgtCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCgct > 2:3943046/1‑91 (MQ=255)
tgttgtCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGtt > 1:4589432/1‑93 (MQ=255)
gttgtCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGttt > 2:2422396/1‑93 (MQ=255)
gttgtCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGttt > 2:6110205/1‑93 (MQ=255)
gttgtCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGttt < 2:3274001/93‑1 (MQ=255)
tCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTc < 1:4433828/93‑1 (MQ=255)
tCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTc > 1:4696011/1‑93 (MQ=255)
ttGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCta > 2:3155263/1‑92 (MQ=255)
ttGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTc < 1:4326854/93‑1 (MQ=255)
ttGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTc < 1:5426214/93‑1 (MQ=255)
ttGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTc < 2:1944745/93‑1 (MQ=255)
tGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCa > 2:6419983/1‑93 (MQ=255)
tGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCa > 1:5070243/1‑93 (MQ=255)
tGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCa < 1:4726874/93‑1 (MQ=255)
tttATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGc < 1:673581/93‑1 (MQ=255)
tttATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGc > 2:2258684/1‑93 (MQ=255)
ttATTTTAAAAGAAACGCGCCCAGCAGCTCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGcc > 2:4245774/1‑93 (MQ=255)
ttATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGcc < 2:2753441/93‑1 (MQ=255)
tATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCg > 1:1606976/1‑93 (MQ=255)
aTTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGCTTTTTCCTCAGCCgt > 2:2862345/1‑93 (MQ=255)
ttttAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCgtg < 2:3996301/93‑1 (MQ=255)
ttttAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCgtg > 1:3947790/1‑93 (MQ=255)
tttAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCgtgt > 1:4347936/1‑93 (MQ=255)
tAAAAGAAACGCGCCCAGCAGACCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGtgttg > 1:4226670/1‑93 (MQ=255)
aaaaGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGtgttgt < 1:1778233/93‑1 (MQ=255)
aaaaGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGtgttgt > 2:6237492/1‑93 (MQ=255)
gAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATc < 2:4967527/93‑1 (MQ=255)
gAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATc > 1:800825/1‑93 (MQ=255)
aaaaCGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATc < 2:4170492/92‑1 (MQ=255)
aaaCGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATca > 2:5046421/1‑93 (MQ=255)
aaaCGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATca < 2:4391563/93‑1 (MQ=255)
aaCGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATcac > 2:3599295/1‑93 (MQ=255)
gcgcCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATcaccac < 1:2074115/93‑1 (MQ=255)
gcgcCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATcaccac > 1:3465584/1‑93 (MQ=255)
gcgcCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATcaccac > 2:3339500/1‑93 (MQ=255)
gcCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCAccc < 2:1645459/93‑1 (MQ=255)
cccAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCt < 1:4063940/93‑1 (MQ=255)
cagcagCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTCa > 1:3272567/1‑93 (MQ=255)
cAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTCa < 2:4081318/93‑1 (MQ=255)
agcagcCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTCAg < 2:1317909/93‑1 (MQ=255)
|
TTCCCGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTCAG > NC_000913/3889703‑3889884
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTCCCGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTCAGCGTT > NC_000913/3889702‑3889888
|
ATTCCCGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCA < SRR4302547.1575015/94‑1 (MQ=60)
ATTCCCGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCA < SRR4302547.2805235/94‑1 (MQ=60)
TCCCGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGC > SRR4302547.3656150/1‑94 (MQ=60)
CCCGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCC < SRR4302547.1006919/94‑1 (MQ=60)
CCCGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCC > SRR4302547.277230/1‑94 (MQ=60)
CCGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCC > SRR4302547.6593775/1‑94 (MQ=60)
CGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCC > SRR4302547.1865786/1‑94 (MQ=60)
GTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCC < SRR4302547.3865891/94‑1 (MQ=60)
GTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCC < SRR4302547.917649/94‑1 (MQ=60)
GTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCC < SRR4302547.5829895/94‑1 (MQ=60)
TGGCAGAGTGTGTTCTGGGTGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCG > SRR4302547.6625726/1‑94 (MQ=60)
GGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGC > SRR4302547.4895306/1‑94 (MQ=60)
GGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGC > SRR4302547.712269/1‑94 (MQ=60)
GCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCA < SRR4302547.6544571/94‑1 (MQ=60)
CAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAG > SRR4302547.3222539/1‑94 (MQ=60)
CAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAG > SRR4302547.1337820/1‑94 (MQ=60)
CAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAG < SRR4302547.3419684/94‑1 (MQ=60)
CAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAG < SRR4302547.2045505/94‑1 (MQ=60)
AGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGC > SRR4302547.2517895/1‑94 (MQ=60)
AGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGC > SRR4302547.309187/1‑94 (MQ=60)
AGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGC > SRR4302547.6643017/1‑94 (MQ=60)
AGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGC > SRR4302547.5153828/1‑94 (MQ=60)
AGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTT < SRR4302547.1787096/94‑1 (MQ=60)
AGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTT > SRR4302547.1405832/1‑94 (MQ=60)
GTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTC > SRR4302547.2606162/1‑94 (MQ=60)
GTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTC < SRR4302547.461675/94‑1 (MQ=60)
GTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTC < SRR4302547.4356782/94‑1 (MQ=60)
TCTGTTCTGGGCGAGGGCACTGATGGGCATCGCGGTACTGATTTTGTCTTTCTTTATTATAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCG < SRR4302547.4614596/94‑1 (MQ=60)
CTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGG < SRR4302547.4398850/94‑1 (MQ=60)
TGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGA < SRR4302547.4484452/94‑1 (MQ=60)
TTTCTGGGTGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGAT < SRR4302547.1292605/94‑1 (MQ=60)
TCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAA < SRR4302547.1400859/94‑1 (MQ=60)
CTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAA > SRR4302547.5226299/1‑94 (MQ=60)
CTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAA > SRR4302547.1981602/1‑94 (MQ=60)
TGGGTGACGGCAATGGTGGGCATCGCGGTACTGTTTTTGTCTTTGTTTATTTTAAAAGAAACACGCCCAGCCGCCCCCGCAGCTTCGGATAAAC > SRR4302547.958587/1‑94 (MQ=60)
GGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACC > SRR4302547.6049294/1‑94 (MQ=60)
GGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCA > SRR4302547.4745827/1‑94 (MQ=60)
CGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACG > SRR4302547.3471537/1‑94 (MQ=60)
GATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGA < SRR4302547.4473149/94‑1 (MQ=60)
GTGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAG < SRR4302547.1934893/94‑1 (MQ=60)
ATGGCAATGATGGGCATCGCGGTACTTATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAG < SRR4302547.3913062/94‑1 (MQ=60)
ATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAG < SRR4302547.2062897/94‑1 (MQ=60)
GGCAATGATGGGCATCGCGGTACTGCTGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAA > SRR4302547.6537067/1‑94 (MQ=60)
GGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAA < SRR4302547.6066628/94‑1 (MQ=60)
GGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAA > SRR4302547.3595054/1‑94 (MQ=60)
GGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAA < SRR4302547.3608474/94‑1 (MQ=60)
GGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAA < SRR4302547.3539585/94‑1 (MQ=60)
AATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAAT > SRR4302547.555173/1‑94 (MQ=60)
AATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGAAGCTTCGGATAAACCACGAGAAAAT > SRR4302547.4811328/1‑94 (MQ=60)
ATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATA < SRR4302547.933813/94‑1 (MQ=60)
ATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATA > SRR4302547.3936992/1‑94 (MQ=60)
ATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATA > SRR4302547.1478105/1‑94 (MQ=60)
ATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATA < SRR4302547.1079750/94‑1 (MQ=60)
ATGATCGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATA < SRR4302547.2881697/94‑1 (MQ=60)
TGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGGCCAGCAGCCCCCGCAGCTTCGGCTAAACCACGAGAAAATAG > SRR4302547.4985948/1‑94 (MQ=60)
GATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAACCGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGC < SRR4302547.5875805/94‑1 (MQ=60)
GATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGC > SRR4302547.1901679/1‑94 (MQ=60)
GATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGC < SRR4302547.6040611/94‑1 (MQ=60)
GATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGC > SRR4302547.6399859/1‑94 (MQ=60)
ATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCG > SRR4302547.6781573/1‑94 (MQ=60)
ATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCG > SRR4302547.6255693/1‑94 (MQ=60)
ATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCG > SRR4302547.5905546/1‑94 (MQ=60)
TGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAtgtcaagatcggaagagc > SRR4302547.4191933/1‑76 (MQ=60)
GCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTC < SRR4302547.5038972/94‑1 (MQ=60)
GCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTC < SRR4302547.2556039/94‑1 (MQ=60)
CATCGCTGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCG < SRR4302547.5109314/94‑1 (MQ=60)
CATCGCGGTACTGATGTTGCCTTTGTTTATTTTAAAAGAAACGTGCCCAGCATCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCG < SRR4302547.962509/94‑1 (MQ=60)
ATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGC > SRR4302547.4941167/1‑94 (MQ=60)
TCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCT < SRR4302547.4867704/94‑1 (MQ=60)
TCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCT > SRR4302547.2448185/1‑94 (MQ=60)
CGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTG < SRR4302547.3704411/94‑1 (MQ=60)
CGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCT > SRR4302547.5250123/1‑94 (MQ=60)
CGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCT < SRR4302547.2573571/94‑1 (MQ=60)
CGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCT < SRR4302547.1050945/94‑1 (MQ=60)
GGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTT < SRR4302547.2364384/94‑1 (MQ=60)
GGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTT > SRR4302547.3469665/1‑94 (MQ=60)
GGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTT > SRR4302547.1441613/1‑94 (MQ=60)
GGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTT > SRR4302547.5353289/1‑94 (MQ=60)
GGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTT > SRR4302547.5669008/1‑94 (MQ=60)
GGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTT < SRR4302547.2515645/94‑1 (MQ=60)
GTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTA > SRR4302547.3735507/1‑94 (MQ=60)
TACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAA < SRR4302547.5487521/94‑1 (MQ=60)
TACTGATGATGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAA > SRR4302547.6444096/1‑94 (MQ=60)
ACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAAC > SRR4302547.2073715/1‑94 (MQ=60)
CTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACC < SRR4302547.3645670/94‑1 (MQ=60)
TGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCG > SRR4302547.4820279/1‑94 (MQ=60)
GATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGT > SRR4302547.5835048/1‑94 (MQ=60)
GATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGT < SRR4302547.5414818/94‑1 (MQ=60)
ATGTTGTCTTTGTTTATTTTAAAATAAGCGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGATAAAATAGCGAGTCGCTCCTTAACCGTT < SRR4302547.1135262/94‑1 (MQ=60)
ATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTT > SRR4302547.4684415/1‑94 (MQ=60)
GTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTT > SRR4302547.2732903/1‑94 (MQ=60)
TTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTT > SRR4302547.3990032/1‑94 (MQ=60)
TGTCTTTGTGTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTT < SRR4302547.4213526/94‑1 (MQ=60)
GTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTC > SRR4302547.4793282/1‑94 (MQ=60)
GTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTC > SRR4302547.4136755/1‑94 (MQ=60)
TCTTTGTTTATTTTAAAAGAACCGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCTCTGCTTAACCGTTTTTTCC < SRR4302547.4900251/94‑1 (MQ=60)
TCTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCC < SRR4302547.4525488/94‑1 (MQ=60)
TTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGaagctgcgg < SRR4302547.1297575/94‑10 (MQ=60)
CTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCT > SRR4302547.5632346/1‑94 (MQ=60)
CTTTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCT > SRR4302547.535343/1‑94 (MQ=60)
TTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCA < SRR4302547.5538424/94‑1 (MQ=60)
TTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCA < SRR4302547.4415910/94‑1 (MQ=60)
TTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCA > SRR4302547.5757643/1‑94 (MQ=60)
TTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCA > SRR4302547.640183/1‑94 (MQ=60)
TTGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCA > SRR4302547.5174861/1‑94 (MQ=60)
TGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAG < SRR4302547.4559754/94‑1 (MQ=60)
TGTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAG < SRR4302547.4824815/94‑1 (MQ=60)
TTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGC < SRR4302547.362463/94‑1 (MQ=60)
GTTTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGC > SRR4302547.2246003/1‑94 (MQ=60)
TTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCC < SRR4302547.685973/94‑1 (MQ=60)
TTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCG < SRR4302547.3339509/94‑1 (MQ=60)
TTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCG < SRR4302547.32276/94‑1 (MQ=60)
TTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCG < SRR4302547.1228848/94‑1 (MQ=60)
TTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCG > SRR4302547.1638833/1‑94 (MQ=60)
TTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCG > SRR4302547.524201/1‑94 (MQ=60)
TTATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCG < SRR4302547.494151/94‑1 (MQ=60)
TATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGT > SRR4302547.823749/1‑94 (MQ=60)
ATTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTG > SRR4302547.4028088/1‑94 (MQ=60)
TTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGT < SRR4302547.4874471/94‑1 (MQ=60)
TTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGT < SRR4302547.1271222/94‑1 (MQ=60)
TTTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGT > SRR4302547.4437291/1‑94 (MQ=60)
TTTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTT < SRR4302547.969662/94‑1 (MQ=60)
TTAAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTG > SRR4302547.4424793/1‑94 (MQ=60)
TTAAAAGAAACGCGCCCAGCAGACCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTG > SRR4302547.4313048/1‑94 (MQ=60)
AAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTT > SRR4302547.887112/1‑94 (MQ=60)
AAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTT > SRR4302547.3359520/1‑94 (MQ=60)
AAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTT > SRR4302547.516909/1‑94 (MQ=60)
AAAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTT < SRR4302547.1813486/94‑1 (MQ=60)
AAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTA > SRR4302547.2240618/1‑94 (MQ=60)
AAAGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGATTTTTCCTCAGCCGTGTTGTTA > SRR4302547.6090442/1‑94 (MQ=60)
AGAAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATC > SRR4302547.815993/1‑94 (MQ=60)
AAACGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCAC > SRR4302547.5926041/1‑94 (MQ=60)
CGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCAC > SRR4302547.3536260/1‑94 (MQ=60)
CGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCAC > SRR4302547.6759835/1‑94 (MQ=60)
CGCGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCAC > SRR4302547.570339/1‑94 (MQ=60)
GCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACC < SRR4302547.2115498/94‑1 (MQ=60)
CGCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCC < SRR4302547.6542035/94‑1 (MQ=60)
GCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCT > SRR4302547.1567478/1‑94 (MQ=60)
GCCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCT < SRR4302547.5379131/94‑1 (MQ=60)
CCCAGCAGCCCCCGCATCTTCGGATAAACCACGAGAAAATAGCGCGTCGCAGCTTAACCGATTTTTCCTCAGCCGCGTTGTTATCACCACCCTC > SRR4302547.3211530/1‑94 (MQ=60)
CCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTC < SRR4302547.4146479/94‑1 (MQ=60)
CCCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTC > SRR4302547.1077943/1‑94 (MQ=60)
CCAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTCA > SRR4302547.3338106/1‑94 (MQ=60)
CAGCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTCAG > SRR4302547.1535586/1‑94 (MQ=60)
GCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTCAGCG > SRR4302547.3569724/1‑94 (MQ=60)
GCAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTCAGCG > SRR4302547.2407214/1‑94 (MQ=60)
CAGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTCAGCGT > SRR4302547.750333/1‑94 (MQ=60)
AGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTCAGCGTT > SRR4302547.1415590/1‑94 (MQ=60)
AGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTCAGCGTT > SRR4302547.5624844/1‑94 (MQ=60)
|
ATTCCCGTGGCAGAGTCTGTTCTGGGCGATGGCAATGATGGGCATCGCGGTACTGATGTTGTCTTTGTTTATTTTAAAAGAAACGCGCCCAGCGGCCCCCGCAGCTTCGGATAAACCACGAGAAAATAGCGAGTCGCTGCTTAACCGTTTTTTCCTCAGCCGTGTTGTTATCACCACCCTCAGCGTT > NC_000913/3889702‑3889888
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
