Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,928,363	C→T	G120S (GGC→AGC)	yieN ←	putative 2‑component regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,928,363	0	C	T	86.4%	731.6 / 79.9	249	G120S (GGC→AGC)	yieN	putative 2‑component regulator
Reads supporting (aligned to +/- strand): ref base C (18/16); new base T (98/117); total (116/133)
Fisher's exact test for biased strand distribution p-value = 4.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.14e-01

Only 100 of 257 total aligned reads displayed.

CAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCC  >  NC_000913/3928271‑3928454

cagcagACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGcc                                                                                             <  1:3362326/93‑1 (MQ=255)

   cagACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGc                                                                                          <  1:5506931/93‑1 (MQ=255)

    agACGCATCGTGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCt                                                                                         >  1:6011454/1‑93 (MQ=255)

    agACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCt                                                                                         >  2:4432434/1‑93 (MQ=255)

    agACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCt                                                                                         <  2:3540627/93‑1 (MQ=255)

    agACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCt                                                                                         <  2:6131623/93‑1 (MQ=255)

     gACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCtt                                                                                        >  2:4128999/1‑93 (MQ=255)

     gACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCtt                                                                                        >  2:1471549/1‑93 (MQ=255)

         cATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCa                                                                                    <  1:6379260/93‑1 (MQ=255)

          aTCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAg                                                                                   <  1:4538209/93‑1 (MQ=255)

          aTCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAg                                                                                   >  2:555451/1‑93 (MQ=255)

           tCGGGGTTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGa                                                                                  >  1:6056718/1‑93 (MQ=255)

           tCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGa                                                                                  >  2:914601/1‑93 (MQ=255)

           tCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGa                                                                                  <  1:573994/93‑1 (MQ=255)

           tCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGa                                                                                  >  2:1544953/1‑93 (MQ=255)

            cGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGAt                                                                                 <  1:3508968/93‑1 (MQ=255)

            cGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGAt                                                                                 <  1:5433573/93‑1 (MQ=255)

            cGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGAt                                                                                 <  2:6488700/93‑1 (MQ=255)

             gggATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGAtc                                                                                >  2:6041167/1‑93 (MQ=255)

             gggATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGAtc                                                                                >  2:379007/1‑93 (MQ=255)

             gggATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGAtc                                                                                <  1:4301801/93‑1 (MQ=255)

               gATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGAtctc                                                                              >  1:6337970/1‑93 (MQ=255)

               gATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGAtctc                                                                              >  2:248896/1‑93 (MQ=255)

                 ttttttCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCAt                                                                            >  2:5270631/1‑93 (MQ=255)

                  tttttCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATc                                                                           <  2:3454865/93‑1 (MQ=255)

                  tttttCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATc                                                                           >  2:4946217/1‑93 (MQ=255)

                   ttttCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATcc                                                                          <  2:2099647/93‑1 (MQ=255)

                    tttCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCa                                                                         <  1:6139441/93‑1 (MQ=255)

                     ttCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAg                                                                        <  1:1019650/93‑1 (MQ=255)

                       cTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGaa                                                                      <  2:4897062/93‑1 (MQ=255)

                          cGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGa                                                                   <  2:3109486/93‑1 (MQ=255)

                           gtgtGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGAc                                                                  >  1:2358342/1‑93 (MQ=255)

                           gtgtGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGAc                                                                  <  1:4065062/93‑1 (MQ=255)

                            tgtgCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACa                                                                 >  2:1200135/1‑93 (MQ=255)

                            tgtgCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACa                                                                 >  2:5886280/1‑93 (MQ=255)

                            tgtgCACCGTTGCGGAACAGTCGCTCGTAAATTGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACa                                                                 <  2:3256764/93‑1 (MQ=255)

                             gtgCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACaa                                                                <  1:2509109/93‑1 (MQ=255)

                             gtgCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGGATTAAGAATTGCCGGGATCGCTTTCCAGATCTCATCCAGAAAGATaa                                                                >  2:87781/1‑93 (MQ=255)

                              tgCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAAt                                                               <  1:1864380/93‑1 (MQ=255)

                                cACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAAttt                                                             >  1:2721753/1‑93 (MQ=255)

                                 aCCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTc                                                            <  1:1648468/93‑1 (MQ=255)

                                 aCCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTc                                                            <  1:370094/93‑1 (MQ=255)

                                 aCCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTc                                                            <  1:4806370/93‑1 (MQ=255)

                                  ccGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCt                                                           >  1:1338349/1‑93 (MQ=255)

                                  ccGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCt                                                           <  1:173887/93‑1 (MQ=255)

                                    gTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGc                                                         <  2:6545424/93‑1 (MQ=255)

                                     ttGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCt                                                        >  1:1295317/1‑93 (MQ=255)

                                     ttGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCt                                                        >  1:4734241/1‑93 (MQ=255)

                                        cGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTcc                                                     <  2:334898/93‑1 (MQ=255)

                                        cGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTcc                                                     <  2:3957088/93‑1 (MQ=255)

                                         ggAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCg                                                    <  2:4298589/93‑1 (MQ=255)

                                         ggAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCg                                                    >  2:5409282/1‑93 (MQ=255)

                                          gAACTGGCGCTCGTTAATGGCGGTGAGCCAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGACAGACAATTTCTGCTTCCgg                                                   >  2:233935/1‑93 (MQ=255)

                                            aCTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCa                                                 <  2:5119539/93‑1 (MQ=255)

                                             cTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAg                                                >  1:3667515/1‑93 (MQ=255)

                                              tGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAgg                                               >  2:3687360/1‑93 (MQ=255)

                                               ggCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGt                                              >  2:3879093/1‑93 (MQ=255)

                                               ggCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGt                                              <  1:2877350/93‑1 (MQ=255)

                                                  gcTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAAc                                           >  1:4890956/1‑93 (MQ=255)

                                                  gcTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAAc                                           >  1:2613002/1‑93 (MQ=255)

                                                   cTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAAcc                                          <  1:1569029/93‑1 (MQ=255)

                                                     cGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGc                                        <  2:4355095/93‑1 (MQ=255)

                                                     cGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGc                                        <  2:4541145/93‑1 (MQ=255)

                                                     cGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGc                                        <  1:4077843/93‑1 (MQ=255)

                                                     cGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGc                                        <  2:1775587/93‑1 (MQ=255)

                                                      gTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCt                                       >  1:6249421/1‑93 (MQ=255)

                                                      gTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCt                                       >  2:4607171/1‑93 (MQ=255)

                                                      gTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCt                                       >  2:1350379/1‑93 (MQ=255)

                                                         aaTGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGt                                    >  2:5090708/1‑93 (MQ=255)

                                                          aTGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGtt                                   >  2:2723341/1‑93 (MQ=255)

                                                          aTGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGtt                                   >  1:4441309/1‑93 (MQ=255)

                                                          aTGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGtt                                   >  1:5181143/1‑93 (MQ=255)

                                                             gCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTaaa                                >  1:5528647/1‑93 (MQ=255)

                                                             gCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTaaa                                >  2:2652655/1‑93 (MQ=255)

                                                              cGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAAc                               <  1:116066/93‑1 (MQ=255)

                                                              cGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAAc                               >  1:732857/1‑93 (MQ=255)

                                                               ggTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACg                              >  2:6258621/1‑93 (MQ=255)

                                                                 tGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGtt                            >  1:390494/1‑93 (MQ=255)

                                                                 tGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGtt                            >  1:6586782/1‑93 (MQ=255)

                                                                  gAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTc                           >  2:4861001/1‑93 (MQ=255)

                                                                      aaGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGATAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAg                       <  2:4845742/93‑1 (MQ=255)

                                                                      aaGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAg                       <  2:184394/93‑1 (MQ=255)

                                                                           aTTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGccc                  >  2:2834196/1‑93 (MQ=255)

                                                                               aGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCa              >  2:3757829/1‑93 (MQ=255)

                                                                               aGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCa              <  2:93737/93‑1 (MQ=255)

                                                                                gAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCcatcat             >  1:764873/1‑93 (MQ=255)

                                                                                 aaTTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATc            <  1:891510/93‑1 (MQ=255)

                                                                                 aaTTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATc            <  2:222630/93‑1 (MQ=255)

                                                                                   ttGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCtt          <  2:2881576/93‑1 (MQ=255)

                                                                                    tGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCttt         <  1:1952776/93‑1 (MQ=255)

                                                                                      ccGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTa       <  1:379258/93‑1 (MQ=255)

                                                                                       cGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCttttcg      <  1:4191183/93‑3 (MQ=255)

                                                                                       cGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAg      >  1:993787/1‑93 (MQ=255)

                                                                                       cGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAg      <  2:673954/93‑1 (MQ=255)

                                                                                        gggCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAgc     >  2:5753162/1‑93 (MQ=255)

                                                                                        gggCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAgc     >  1:2128539/1‑93 (MQ=255)

                                                                                         ggCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAgcg    >  2:4021327/1‑93 (MQ=255)

                                                                                         ggCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAgcg    >  2:6397969/1‑93 (MQ=255)

                                                                                          gCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAgcgc   >  1:3126605/1‑93 (MQ=255)

                                                                                           cccGCTTTCCAGACCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGGAACCGCTGGTTATACGTTCATAGCGCCCTTCATCTTTTAGCGcc  >  1:2084887/1‑93 (MQ=255)

CAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCC  >  NC_000913/3928271‑3928454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTG  >  NC_000913/3928270‑3928456

CCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCT                                                                                               <  SRR4302547.6426919/94‑1 (MQ=60)

 CAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTC                                                                                              <  SRR4302547.331762/94‑1 (MQ=60)

 CAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTC                                                                                              >  SRR4302547.2877564/1‑94 (MQ=60)

 CAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTC                                                                                              <  SRR4302547.2804637/94‑1 (MQ=60)

 CAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTC                                                                                              <  SRR4302547.4167196/94‑1 (MQ=60)

 CAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC                                                                                              <  SRR4302547.3430576/94‑1 (MQ=60)

  AGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCG                                                                                             <  SRR4302547.5803236/94‑1 (MQ=60)

    CAGACGCATCGTGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCT                                                                                           >  SRR4302547.6136220/1‑94 (MQ=60)

    CAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCT                                                                                           <  SRR4302547.2306056/94‑1 (MQ=60)

    CAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCT                                                                                           <  SRR4302547.5403333/94‑1 (MQ=60)

    CAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCT                                                                                           <  SRR4302547.5620635/94‑1 (MQ=60)

     AGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTT                                                                                          >  SRR4302547.5612466/1‑94 (MQ=60)

     AGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTT                                                                                          <  SRR4302547.375525/94‑1 (MQ=60)

      GACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTT                                                                                         <  SRR4302547.1696730/94‑1 (MQ=60)

      GACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTT                                                                                         <  SRR4302547.862717/94‑1 (MQ=60)

       ACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTC                                                                                        <  SRR4302547.4916513/94‑1 (MQ=60)

       ACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTC                                                                                        >  SRR4302547.3703037/1‑94 (MQ=60)

          CATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAG                                                                                     <  SRR4302547.6512387/94‑1 (MQ=60)

          CATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAG                                                                                     >  SRR4302547.5822397/1‑94 (MQ=60)

           ATCGGGGTTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGA                                                                                    >  SRR4302547.6182358/1‑94 (MQ=60)

           ATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGA                                                                                    >  SRR4302547.6450274/1‑94 (MQ=60)

           ATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGA                                                                                    <  SRR4302547.4632011/94‑1 (MQ=60)

            TCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGAT                                                                                   <  SRR4302547.584298/94‑1 (MQ=60)

             CGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATC                                                                                  >  SRR4302547.4514737/1‑94 (MQ=60)

             CGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATC                                                                                  >  SRR4302547.6357149/1‑94 (MQ=60)

             CGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATC                                                                                  <  SRR4302547.3580589/94‑1 (MQ=60)

             CGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATC                                                                                  <  SRR4302547.5545888/94‑1 (MQ=60)

              GGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCT                                                                                 <  SRR4302547.4390278/94‑1 (MQ=60)

               GGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTC                                                                                >  SRR4302547.6469937/1‑94 (MQ=60)

                GATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCA                                                                               >  SRR4302547.6488569/1‑94 (MQ=60)

                    TTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCA                                                                           <  SRR4302547.3977772/94‑1 (MQ=60)

                     TTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAG                                                                          <  SRR4302547.6776514/94‑1 (MQ=60)

                     TTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAG                                                                          <  SRR4302547.6266802/94‑1 (MQ=60)

                     TTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAG                                                                          <  SRR4302547.6265719/94‑1 (MQ=60)

                      TTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGA                                                                         <  SRR4302547.1039634/94‑1 (MQ=60)

                       TCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAA                                                                        <  SRR4302547.5058963/94‑1 (MQ=60)

                         TACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAG                                                                      <  SRR4302547.2838409/94‑1 (MQ=60)

                          ACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGA                                                                     >  SRR4302547.5742721/1‑94 (MQ=60)

                           CGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGAC                                                                    >  SRR4302547.2406135/1‑94 (MQ=60)

                            GTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACA                                                                   <  SRR4302547.4147626/94‑1 (MQ=60)

                              GTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAAT                                                                 <  SRR4302547.2559835/94‑1 (MQ=60)

                               TGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATT                                                                <  SRR4302547.1901200/94‑1 (MQ=60)

                               TGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATT                                                                <  SRR4302547.586542/94‑1 (MQ=60)

                                GCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTT                                                               >  SRR4302547.2776410/1‑94 (MQ=60)

                                GCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTT                                                               >  SRR4302547.1621694/1‑94 (MQ=60)

                                  ACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCT                                                             <  SRR4302547.4905981/94‑1 (MQ=60)

                                  ACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCT                                                             <  SRR4302547.376952/94‑1 (MQ=60)

                                  ACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCT                                                             <  SRR4302547.6403639/94‑1 (MQ=60)

                                  ACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCT                                                             <  SRR4302547.4150107/94‑1 (MQ=60)

                                  ACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCT                                                             <  SRR4302547.6192545/94‑1 (MQ=60)

                                  ACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCT                                                             <  SRR4302547.2933797/94‑1 (MQ=60)

                                  ACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCT                                                             <  SRR4302547.1681016/94‑1 (MQ=60)

                                  ACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCT                                                             <  SRR4302547.2470371/94‑1 (MQ=60)

                                  ACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCT                                                             >  SRR4302547.1365248/1‑94 (MQ=60)

                                  ACCGTTGCGGAACTAGCGCTCGTTAATGTCGTTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCGCATCCATAAAGACAATTTCT                                                             <  SRR4302547.2367052/94‑1 (MQ=60)

                                   CCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTG                                                            <  SRR4302547.177073/94‑1 (MQ=60)

                                   CCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTG                                                            <  SRR4302547.6157503/94‑1 (MQ=60)

                                    CGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGC                                                           >  SRR4302547.5632169/1‑94 (MQ=60)

                                     GTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCT                                                          >  SRR4302547.4832362/1‑94 (MQ=60)

                                     GTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCT                                                          >  SRR4302547.1321391/1‑94 (MQ=60)

                                      TTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTT                                                         <  SRR4302547.3411644/94‑1 (MQ=60)

                                      TTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTT                                                         <  SRR4302547.5600644/94‑1 (MQ=60)

                                        GCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCC                                                       <  SRR4302547.1226861/94‑1 (MQ=60)

                                            AACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCA                                                   >  SRR4302547.4876238/1‑94 (MQ=60)

                                             ACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAG                                                  >  SRR4302547.3742315/1‑94 (MQ=60)

                                              CTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAATAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGG                                                 <  SRR4302547.2075469/94‑1 (MQ=60)

                                              CTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGG                                                 <  SRR4302547.4461340/94‑1 (MQ=60)

                                              CTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGG                                                 >  SRR4302547.922759/1‑94 (MQ=60)

                                                GGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTA                                               <  SRR4302547.2934793/94‑1 (MQ=60)

                                                GGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTA                                               <  SRR4302547.2934791/94‑1 (MQ=60)

                                                GGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTA                                               <  SRR4302547.761998/94‑1 (MQ=60)

                                                  CGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAAC                                             >  SRR4302547.4992254/1‑94 (MQ=60)

                                                  CGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAAC                                             >  SRR4302547.949851/1‑94 (MQ=60)

                                                  CGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAAC                                             >  SRR4302547.418750/1‑94 (MQ=60)

                                                  CGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAAC                                             >  SRR4302547.2665658/1‑94 (MQ=60)

                                                   GCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACC                                            >  SRR4302547.3912687/1‑94 (MQ=60)

                                                   GCTCGTTAATGGCGGTGAGCAAGGGATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATTCAGAAAGACAATTTCTGCTTCCAGCAGGgcacc                                            >  SRR4302547.6590013/1‑89 (MQ=60)

                                                    CTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCG                                           <  SRR4302547.2607948/94‑1 (MQ=60)

                                                    CTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCG                                           <  SRR4302547.1600273/94‑1 (MQ=60)

                                                    CTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGGAACCG                                           >  SRR4302547.1745000/1‑94 (MQ=60)

                                                     TCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGC                                          >  SRR4302547.6124559/1‑94 (MQ=60)

                                                      CGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCT                                         <  SRR4302547.4160700/94‑1 (MQ=60)

                                                      CGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCT                                         <  SRR4302547.2165537/94‑1 (MQ=60)

                                                      CGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCT                                         >  SRR4302547.6379245/1‑94 (MQ=60)

                                                         TAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGT                                      >  SRR4302547.705842/1‑94 (MQ=60)

                                                          AATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTT                                     >  SRR4302547.5287774/1‑94 (MQ=60)

                                                          AATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTT                                     >  SRR4302547.3790047/1‑94 (MQ=60)

                                                          AATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTT                                     >  SRR4302547.4533141/1‑94 (MQ=60)

                                                           ATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTA                                    <  SRR4302547.1134619/94‑1 (MQ=60)

                                                           ATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTA                                    >  SRR4302547.5032961/1‑94 (MQ=60)

                                                            TGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAA                                   <  SRR4302547.1220553/94‑1 (MQ=60)

                                                             GGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAA                                  >  SRR4302547.463656/1‑94 (MQ=60)

                                                             GGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAA                                  >  SRR4302547.5642777/1‑94 (MQ=60)

                                                             GGCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAA                                  <  SRR4302547.4863045/94‑1 (MQ=60)

                                                              GCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAAC                                 >  SRR4302547.3023558/1‑94 (MQ=60)

                                                              GCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAAC                                 <  SRR4302547.818916/94‑1 (MQ=60)

                                                              GCGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAAC                                 >  SRR4302547.746546/1‑94 (MQ=60)

                                                               CGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACG                                <  SRR4302547.118177/94‑1 (MQ=60)

                                                               CGGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACG                                <  SRR4302547.2304004/94‑1 (MQ=60)

                                                                GGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGT                               >  SRR4302547.3524045/1‑94 (MQ=60)

                                                                GGTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGT                               >  SRR4302547.133769/1‑94 (MQ=60)

                                                                 GTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTT                              >  SRR4302547.6723915/1‑94 (MQ=60)

                                                                 GTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTT                              <  SRR4302547.4184913/94‑1 (MQ=60)

                                                                 GTGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTT                              >  SRR4302547.397741/1‑94 (MQ=60)

                                                                  TGAGCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTC                             <  SRR4302547.3494978/94‑1 (MQ=60)

                                                                     GCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATA                          <  SRR4302547.3758308/94‑1 (MQ=60)

                                                                     GCAAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATA                          <  SRR4302547.4326019/94‑1 (MQ=60)

                                                                       AAGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGC                        <  SRR4302547.2696056/94‑1 (MQ=60)

                                                                        AGGTATTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCG                       <  SRR4302547.1546750/94‑1 (MQ=60)

                                                                        AGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCG                       <  SRR4302547.2599666/94‑1 (MQ=60)

                                                                             TTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTT                  >  SRR4302547.1931358/1‑94 (MQ=60)

                                                                             TTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTT                  >  SRR4302547.1973824/1‑94 (MQ=60)

                                                                             TTAAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTT                  >  SRR4302547.654968/1‑94 (MQ=60)

                                                                               AAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCA                >  SRR4302547.1843784/1‑94 (MQ=60)

                                                                               AAGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCA                <  SRR4302547.2104647/94‑1 (MQ=60)

                                                                                AGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCAT               <  SRR4302547.4085902/94‑1 (MQ=60)

                                                                                AGAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCATCAT               >  SRR4302547.779288/1‑94 (MQ=60)

                                                                                 GAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATC              <  SRR4302547.1467639/94‑1 (MQ=60)

                                                                                 GAATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATC              >  SRR4302547.4544539/1‑94 (MQ=60)

                                                                                  AATTGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCT             <  SRR4302547.908652/94‑1 (MQ=60)

                                                                                     TGCCGGGCTCGCTTTCCAGATCTCATCCATAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTACATAGCGCCCATCATCTTTT          <  SRR4302547.6634796/94‑1 (MQ=60)

                                                                                     TGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTT          <  SRR4302547.1991507/94‑1 (MQ=60)

                                                                                     TGCCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTT          <  SRR4302547.4823628/94‑1 (MQ=60)

                                                                                       CCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAG        <  SRR4302547.386289/94‑1 (MQ=60)

                                                                                       CCGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAG        >  SRR4302547.1013149/1‑94 (MQ=60)

                                                                                        CGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTCGC       <  SRR4302547.4276660/94‑1 (MQ=60)

                                                                                        CGGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGC       >  SRR4302547.2170956/1‑94 (MQ=60)

                                                                                         GGGCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCG      <  SRR4302547.4014950/94‑1 (MQ=60)

                                                                                          GGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGC     >  SRR4302547.3188633/1‑94 (MQ=60)

                                                                                           GCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCC    >  SRR4302547.6764039/1‑94 (MQ=60)

                                                                                           GCTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCC    >  SRR4302547.4706636/1‑94 (MQ=60)

                                                                                           GCCCGCTTTCCAGACCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGGAACCGCTGGTTATACGTTCATAGCGCCCTTCATCTTTTAGCGCC    >  SRR4302547.2126464/1‑94 (MQ=60)

                                                                                            CTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCT   <  SRR4302547.3646952/94‑1 (MQ=60)

                                                                                            CTCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCT   >  SRR4302547.1319613/1‑94 (MQ=60)

                                                                                             TCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTG  >  SRR4302547.4261746/1‑94 (MQ=60)

                                                                                             TCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTG  <  SRR4302547.3505646/94‑1 (MQ=60)

CCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCCGCTTTCCAGATCTCATCCAGAAAGACAATTTCTGCTTCCGGCAGGTAACCGCTGGTTAAACGTTCATAGCGCCCTTCATCTTTTAGCGCCTG  >  NC_000913/3928270‑3928456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`