Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,945,351 |
+C |
coding (1/600 nt)
coding (240/240 nt) |
yifDA ←
yifDA ← |
transcription regulator
transcription regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,945,350 | 1 | . | C | 100.0%
| 928.5
/ NA
| 248 | E81G (GAG→GGG) | yifDA | transcription regulator |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (107/141); total (107/141) |
Only 100 of 272 total aligned reads displayed.
ACAAGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCT‑CTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCT > NC_000913/3945258‑3945437
|
aaGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACct‑cc > 2:3676191/1‑92 (MQ=255)
aaGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACct‑cc > 1:1368293/1‑92 (MQ=255)
aGCGTCCCCGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACct‑cct > 1:6477914/1‑91 (MQ=255)
aGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACct‑cct > 2:5214078/1‑91 (MQ=255)
aGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACct‑cct < 1:3228012/93‑3 (MQ=255)
cGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACct‑cctta < 2:6191766/93‑5 (MQ=255)
cGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACct‑cctta < 1:4611889/93‑5 (MQ=255)
aGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGggcg > 2:5629221/1‑93 (MQ=255)
aGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGggcg > 2:4059000/1‑93 (MQ=255)
aGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGGATGCGCCACCTCCTTACGggcg > 1:1325359/1‑93 (MQ=255)
ccACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGggcggc < 1:615228/93‑1 (MQ=255)
aCTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCt > 2:5949290/1‑93 (MQ=255)
aCTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCt > 1:2685397/1‑93 (MQ=255)
cTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTg > 1:72004/1‑93 (MQ=255)
tGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGc > 1:5152665/1‑93 (MQ=255)
gATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGcc < 2:1456149/93‑1 (MQ=255)
ttAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAg < 2:6279865/93‑1 (MQ=255)
ttAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAg < 1:2530597/93‑1 (MQ=255)
tAAGCATACATTCCCACAACGAGGCTCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATCCGCCACCTCCTTACGGGCGGCCTGCCacg < 2:2490303/93‑3 (MQ=255)
aGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTg < 2:5520540/93‑1 (MQ=255)
gCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGc < 1:5980286/93‑1 (MQ=255)
gCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGc < 1:1079243/93‑1 (MQ=255)
cATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCt < 2:2334325/93‑1 (MQ=255)
tACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCa < 1:5577451/93‑1 (MQ=255)
tACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCa < 2:3332142/93‑1 (MQ=255)
tACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCa > 1:2377644/1‑93 (MQ=255)
aCATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCAt < 2:3149867/93‑1 (MQ=255)
aCATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCAt > 1:4288356/1‑93 (MQ=255)
aTTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGa > 2:641190/1‑93 (MQ=255)
aTTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGa > 1:4148978/1‑93 (MQ=255)
aTTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGa < 1:6337626/93‑1 (MQ=255)
ttCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAg < 2:2550839/93‑1 (MQ=255)
ttCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAg > 1:1422457/1‑93 (MQ=255)
ttCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAg > 1:887546/1‑93 (MQ=255)
cccACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCg > 1:1581676/1‑93 (MQ=255)
ccACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGt < 2:6258342/93‑1 (MQ=255)
ccACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGt > 2:4342753/1‑93 (MQ=255)
acaACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGttt > 2:4556294/1‑93 (MQ=255)
acaACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGttt < 1:6274295/93‑1 (MQ=255)
aaCGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCt > 1:6170828/1‑93 (MQ=255)
cGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGc > 1:2919995/1‑93 (MQ=255)
gAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCa > 2:2218770/1‑93 (MQ=255)
aGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCAt > 2:3506887/1‑93 (MQ=255)
aGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCAt > 2:3980136/1‑93 (MQ=255)
aGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCAt > 1:5622696/1‑93 (MQ=255)
ggCGCTGTCACCGATAGAAACCTCGTTATGTCGTGAGGTATGCGCCTCCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATa < 2:4694267/93‑1 (MQ=255)
gcgcTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATaa < 2:3600970/93‑1 (MQ=255)
gcgcTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATaa < 1:6545842/93‑1 (MQ=255)
gcgcTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATaa > 2:6072190/1‑93 (MQ=255)
ggcTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAg < 1:3923490/92‑1 (MQ=255)
cgcTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAg > 1:4621449/1‑93 (MQ=255)
cTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGc > 2:5462646/1‑93 (MQ=255)
cTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGc > 2:947609/1‑93 (MQ=255)
cTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGc < 1:3472847/93‑1 (MQ=255)
gCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagt < 2:6506109/93‑1 (MQ=255)
gCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagt > 1:179305/1‑93 (MQ=255)
gCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagt < 1:1120021/93‑1 (MQ=255)
cACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagta < 2:4004030/93‑1 (MQ=255)
cACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagta < 1:5214078/93‑1 (MQ=255)
cACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagta < 2:268419/93‑1 (MQ=255)
aCCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagtag < 1:6293549/93‑1 (MQ=255)
ccGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagtagt > 1:3120593/1‑93 (MQ=255)
ccGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagtagt < 2:2884839/93‑1 (MQ=255)
cGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGtt > 1:3858713/1‑93 (MQ=255)
cGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGtt < 1:1019826/93‑1 (MQ=255)
gATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGttt > 1:353889/1‑93 (MQ=255)
gATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGttt < 1:2883680/93‑1 (MQ=255)
gATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGttt < 1:2097986/93‑1 (MQ=255)
aTAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGtttt > 2:5920957/1‑93 (MQ=255)
aTAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGtttt < 2:3865519/93‑1 (MQ=255)
aTAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGtttt > 2:2108459/1‑93 (MQ=255)
tAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGttttt > 2:5377198/1‑93 (MQ=255)
tAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGttttt < 2:4462420/93‑1 (MQ=255)
aaGAATACTCGTTATGGCGTGAGGTATGCTCCACCTCCTTACTGTCGACCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGttttt < 1:480972/92‑1 (MQ=255)
aGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTc < 2:1603764/93‑1 (MQ=255)
aGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTc > 1:5776852/1‑93 (MQ=255)
gAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCa > 1:1266762/1‑93 (MQ=255)
aaaaCTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCAc < 1:2003891/93‑1 (MQ=255)
aaaCTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCAcc < 2:1296361/93‑1 (MQ=255)
aaCTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCg > 2:1096412/1‑93 (MQ=255)
aCTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCgg > 1:5300816/1‑93 (MQ=255)
aCTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCgc > 2:5061305/1‑92 (MQ=255)
tCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCa > 1:3824954/1‑93 (MQ=255)
cGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAg < 2:2912174/93‑1 (MQ=255)
tGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGtt < 1:4336406/93‑1 (MQ=255)
tGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGtt > 2:2714142/1‑93 (MQ=255)
tGTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGtt < 1:991359/93‑1 (MQ=255)
gTCGTGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCAGCAGCGGTTa > 2:1945268/1‑93 (MQ=255)
tGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACg > 2:294176/1‑93 (MQ=255)
tGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACg > 2:2372458/1‑93 (MQ=255)
tGAGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACg < 2:4263902/93‑1 (MQ=255)
aGGTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGa < 2:3756592/93‑1 (MQ=255)
ggTATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGat < 2:843159/93‑1 (MQ=255)
tATGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGatat < 2:261242/93‑1 (MQ=255)
aTGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTATTTTTTCACCGGCAGCGGTTAAACGGATAtt < 1:3417023/93‑1 (MQ=255)
aTGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATAtt < 2:1708541/93‑1 (MQ=255)
tGCGCCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTg < 2:5141949/93‑1 (MQ=255)
gcgcCACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGt < 1:4648080/93‑1 (MQ=255)
ccACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTc < 2:1849893/93‑1 (MQ=255)
ccACCTCCTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTc > 2:704243/1‑93 (MQ=255)
|
ACAAGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCT‑CTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCT > NC_000913/3945258‑3945437
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAAGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCT‑CTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGCG > NC_000913/3945259‑3945443
|
CAAGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCT‑CC > SRR4302547.1395755/1‑94 (MQ=60)
AAGCGTCCCCGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCT‑CCT > SRR4302547.6612794/1‑94 (MQ=60)
AAGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCT‑CCT > SRR4302547.971945/1‑94 (MQ=60)
AAGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCT‑CCT > SRR4302547.4644290/1‑94 (MQ=60)
AAGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCT‑CCT < SRR4302547.5712283/94‑1 (MQ=60)
AAGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCT‑CCT > SRR4302547.859255/1‑94 (MQ=60)
AGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCT‑Cctt < SRR4302547.3292436/94‑4 (MQ=60)
AGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCT‑Cctt < SRR4302547.2838377/94‑4 (MQ=60)
CGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC < SRR4302547.4707357/94‑1 (MQ=60)
CGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC > SRR4302547.2270361/1‑94 (MQ=60)
GTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑G > SRR4302547.2026665/1‑94 (MQ=60)
TCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GG > SRR4302547.4285985/1‑94 (MQ=60)
CCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGG < SRR4302547.1586386/94‑1 (MQ=60)
CCCAGACACTGAATAATCATACATCCCCACAAGGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGAATGCGCCGCCTCCTTAC‑GGG < SRR4302547.6620083/94‑1 (MQ=57)
CCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGC < SRR4302547.1381744/94‑1 (MQ=60)
CCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGC > SRR4302547.2121784/1‑94 (MQ=60)
CCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGC < SRR4302547.4742295/94‑1 (MQ=60)
CAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCG < SRR4302547.127941/94‑1 (MQ=60)
CAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCG > SRR4302547.441014/1‑94 (MQ=60)
CAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGGATGCGCCACCTCCTTAC‑GGGCG > SRR4302547.1351999/1‑94 (MQ=60)
CCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCC < SRR4302547.626623/94‑1 (MQ=60)
CCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCC > SRR4302547.6406496/1‑94 (MQ=60)
CACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCT > SRR4302547.2739301/1‑94 (MQ=60)
CACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCT < SRR4302547.1122263/94‑1 (MQ=60)
CACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCT > SRR4302547.2679391/1‑94 (MQ=60)
ACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCCCCTCCTTAC‑GGGCGGCCTG < SRR4302547.1141966/94‑1 (MQ=60)
ACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTG < SRR4302547.1866330/94‑1 (MQ=60)
ACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTG > SRR4302547.73355/1‑94 (MQ=60)
CTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGC > SRR4302547.5258783/1‑94 (MQ=60)
CTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGC > SRR4302547.5320305/1‑94 (MQ=60)
CTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGCATGCGCCACCTCCTTAC‑GGGCGGCCTGC > SRR4302547.6449422/1‑94 (MQ=60)
TTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGG < SRR4302547.2581741/94‑1 (MQ=60)
TAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGT > SRR4302547.3983358/1‑94 (MQ=60)
TAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGT < SRR4302547.3584138/94‑1 (MQ=60)
GCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCT > SRR4302547.5006253/1‑94 (MQ=60)
GCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCT < SRR4302547.1100776/94‑1 (MQ=60)
GCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCT < SRR4302547.6104336/94‑1 (MQ=60)
CATACATTGCCACATCGACGCGCTGGCACCGATAGAAAACACGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTC < SRR4302547.3482048/94‑1 (MQ=60)
ATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCA > SRR4302547.2425813/1‑94 (MQ=60)
TACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCAT < SRR4302547.5955271/94‑1 (MQ=60)
TACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCAT > SRR4302547.4376494/1‑94 (MQ=60)
TACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCAT < SRR4302547.5692467/94‑1 (MQ=60)
TACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCAT < SRR4302547.3844642/94‑1 (MQ=60)
ACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATG < SRR4302547.6450657/94‑1 (MQ=60)
CATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGA > SRR4302547.4233472/1‑94 (MQ=60)
CATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGA < SRR4302547.342636/94‑1 (MQ=60)
CATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGA < SRR4302547.6646781/94‑1 (MQ=60)
ATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAG > SRR4302547.904599/1‑94 (MQ=60)
ATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAG > SRR4302547.1450942/1‑94 (MQ=60)
ATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAG < SRR4302547.6469585/94‑1 (MQ=60)
ATTCCCACAACGAGGCGCTGACACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAG < SRR4302547.3925534/94‑1 (MQ=60)
TCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCG < SRR4302547.4147000/94‑1 (MQ=60)
TCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCG > SRR4302547.1613150/1‑94 (MQ=60)
CCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGT < SRR4302547.4523791/94‑1 (MQ=60)
CCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTT > SRR4302547.228055/1‑94 (MQ=60)
CCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTT > SRR4302547.2974705/1‑94 (MQ=60)
CACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTT > SRR4302547.5602967/1‑94 (MQ=60)
CACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTT > SRR4302547.3602516/1‑94 (MQ=60)
CACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTT > SRR4302547.1423507/1‑94 (MQ=60)
ACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTC > SRR4302547.1570879/1‑94 (MQ=60)
ACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTC < SRR4302547.6485132/94‑1 (MQ=60)
ACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTC < SRR4302547.6404634/94‑1 (MQ=60)
CAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCT > SRR4302547.6298924/1‑94 (MQ=60)
CAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCT < SRR4302547.4233859/94‑1 (MQ=60)
CAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCT > SRR4302547.6261982/1‑94 (MQ=60)
CAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCT > SRR4302547.1063515/1‑94 (MQ=60)
AACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTACGGGGCGGCCTGCCcggggatcctacgggtttcg > SRR4302547.6422430/1‑74 (MQ=60)
ACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGC > SRR4302547.2978219/1‑94 (MQ=60)
GAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCAT > SRR4302547.5738729/1‑94 (MQ=60)
GAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCAT < SRR4302547.5299979/94‑1 (MQ=60)
GAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCAT > SRR4302547.6280620/1‑94 (MQ=60)
TGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATA > SRR4302547.2464245/1‑94 (MQ=60)
GCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAG < SRR4302547.5405731/94‑1 (MQ=60)
GCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAG > SRR4302547.4717147/1‑94 (MQ=60)
GCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAG < SRR4302547.6682078/94‑1 (MQ=60)
GGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGG < SRR4302547.4003271/94‑1 (MQ=60)
CGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGG < SRR4302547.1436918/94‑1 (MQ=60)
CGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGG < SRR4302547.671880/94‑1 (MQ=60)
CTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCA < SRR4302547.3543669/94‑1 (MQ=60)
CTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCA > SRR4302547.488359/1‑94 (MQ=60)
TGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAG < SRR4302547.3530314/94‑1 (MQ=60)
TGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAG > SRR4302547.3520941/1‑94 (MQ=60)
CGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAG < SRR4302547.2757293/94‑1 (MQ=60)
GGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGT > SRR4302547.5761831/1‑94 (MQ=60)
GGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGT > SRR4302547.182671/1‑94 (MQ=60)
GCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTA < SRR4302547.1142604/94‑1 (MQ=60)
CACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAG > SRR4302547.2098460/1‑94 (MQ=60)
CACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAG < SRR4302547.5321402/94‑1 (MQ=60)
CACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAG > SRR4302547.1164991/1‑94 (MQ=60)
ACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGT < SRR4302547.6424379/94‑1 (MQ=60)
ACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGT > SRR4302547.3182467/1‑94 (MQ=60)
CCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTT > SRR4302547.3937241/1‑94 (MQ=60)
CGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTT < SRR4302547.1039814/94‑1 (MQ=60)
CGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTT > SRR4302547.360455/1‑94 (MQ=60)
GATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAT‑GGGCGGCCTGCCATGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTT > SRR4302547.6050883/1‑94 (MQ=60)
GATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTT < SRR4302547.2941235/94‑1 (MQ=60)
GATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTT < SRR4302547.2139809/94‑1 (MQ=60)
ATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTT > SRR4302547.1668513/1‑94 (MQ=60)
TAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTC > SRR4302547.5896337/1‑94 (MQ=60)
AAGAATACTCGTTATGGCGTGAGGTATGCTCCACCTCCTTAC‑TGTCGACCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTC < SRR4302547.489801/94‑1 (MQ=60)
AGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCA < SRR4302547.6285588/94‑1 (MQ=60)
AGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCA > SRR4302547.3255790/1‑94 (MQ=60)
AGAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCA > SRR4302547.1292276/1‑94 (MQ=60)
GAAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCAC < SRR4302547.6618613/94‑1 (MQ=60)
AAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACC < SRR4302547.2043772/94‑1 (MQ=60)
AAAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACC < SRR4302547.4890071/94‑1 (MQ=60)
AAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATTAGCTTTTCTGCATAAGGCATTATTTTTTCACCG < SRR4302547.3243147/94‑1 (MQ=60)
AAACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCG < SRR4302547.132008/94‑1 (MQ=60)
AGCTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGG < SRR4302547.2997364/94‑1 (MQ=60)
AACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGG > SRR4302547.5410178/1‑94 (MQ=60)
ACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGC > SRR4302547.1357060/1‑94 (MQ=60)
ACTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGC > SRR4302547.5139001/1‑94 (MQ=60)
CTCGTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCA > SRR4302547.3902878/1‑94 (MQ=60)
GTTATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCG < SRR4302547.3986187/94‑1 (MQ=60)
TATGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACGGGCAGCGGT > SRR4302547.5424868/1‑94 (MQ=60)
TGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTA < SRR4302547.1010665/94‑1 (MQ=60)
TGTCGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTA < SRR4302547.4425605/94‑1 (MQ=60)
CGTGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAAC < SRR4302547.4712546/94‑1 (MQ=60)
TGAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGG < SRR4302547.36668/94‑1 (MQ=60)
GAGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGA < SRR4302547.636911/94‑1 (MQ=60)
AGGTATGCGCCACCTCCTTAC‑GGGTGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGAT < SRR4302547.4233205/94‑1 (MQ=60)
AGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGAT < SRR4302547.470512/94‑1 (MQ=60)
AGGTATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGAT < SRR4302547.2733747/94‑1 (MQ=60)
ATGCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTATTTTTTCACCGGCAGCGGTTAAACGGATATTG < SRR4302547.3486599/94‑1 (MQ=60)
TGCCCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGT > SRR4302547.764582/1‑94 (MQ=60)
GCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTT < SRR4302547.4744365/94‑1 (MQ=60)
GCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTT < SRR4302547.6420100/94‑1 (MQ=60)
GCGCCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTT < SRR4302547.2468232/94‑1 (MQ=60)
CCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCT < SRR4302547.610866/94‑1 (MQ=60)
CCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCT < SRR4302547.5722693/94‑1 (MQ=60)
CCACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCT < SRR4302547.6720574/94‑1 (MQ=60)
ccctcCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGT < SRR4302547.5830776/89‑1 (MQ=60)
ACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGT > SRR4302547.6739692/1‑94 (MQ=60)
ACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGT < SRR4302547.1663739/94‑1 (MQ=60)
ACCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGT > SRR4302547.6342474/1‑94 (MQ=60)
CCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTG > SRR4302547.5290062/1‑94 (MQ=60)
CCTCCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTGCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTG < SRR4302547.2339710/94‑1 (MQ=60)
ctcCTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGG < SRR4302547.4096498/91‑1 (MQ=60)
CC‑CTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC < SRR4302547.2173656/94‑1 (MQ=60)
C‑CTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGCG > SRR4302547.5975881/1‑94 (MQ=60)
C‑CTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGCG < SRR4302547.605545/94‑1 (MQ=60)
|
CAAGCGTCCCAGCCACTGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACCT‑CTTAC‑GGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGCG > NC_000913/3945259‑3945443
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
