Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,948,087 |
G→A |
intergenic (+44/‑96) |
ilvL → / → ilvG |
ilvGEDA operon leader peptide/acetolactate synthase II large subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,948,087 | 0 | G | A | 99.6%
| 897.4
/ NA
| 231 | intergenic (+44/‑96) | ilvL/ilvG | ilvGEDA operon leader peptide/acetolactate synthase II large subunit |
| Reads supporting (aligned to +/- strand): ref base G (1/0); major base A (130/99); minor base C (1/0); total (132/99) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 244 total aligned reads displayed.
TTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑GGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAA > NC_000913/3947997‑3948176
|
ttattaTCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑agg < 1:5888067/93‑1 (MQ=255)
tattatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAGAGGTCC‑aggg > 1:421558/1‑93 (MQ=255)
tattatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑aggg > 1:6260865/1‑93 (MQ=255)
ttatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGt < 1:123042/93‑1 (MQ=255)
tatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGtt < 2:2329896/93‑1 (MQ=255)
atCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGttt < 1:4718135/93‑1 (MQ=255)
atCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGttt < 2:1502183/93‑1 (MQ=255)
tCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGtttt > 1:3703583/1‑93 (MQ=255)
cACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGttttttt < 1:5632566/93‑1 (MQ=255)
aCCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGtttttttt > 1:2383655/1‑93 (MQ=255)
aCCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGtttttttt > 2:2125095/1‑93 (MQ=255)
aCCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGtttttttt < 1:508554/93‑1 (MQ=255)
aCCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGtttttttt > 2:5731917/1‑93 (MQ=255)
ccGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTg > 2:4924144/1‑93 (MQ=255)
cGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGa < 2:1140919/93‑1 (MQ=255)
gTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGAc < 2:6310474/93‑1 (MQ=255)
tGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGAcc < 2:2665578/93‑1 (MQ=255)
tGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGAcc > 2:3084905/1‑93 (MQ=255)
gCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCt > 1:4577135/1‑93 (MQ=255)
gCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGGTTTTTTTCACCt > 1:2936878/1‑93 (MQ=255)
cGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCtt < 1:932433/93‑1 (MQ=255)
cGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCtt > 2:1930112/1‑93 (MQ=255)
cGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCtt < 1:5506979/93‑1 (MQ=255)
ggggCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTa > 1:2029558/1‑93 (MQ=255)
gggCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTaa > 1:6159112/1‑93 (MQ=255)
gggCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTaa > 2:3742317/1‑93 (MQ=255)
ggCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTaaa > 1:1563378/1‑93 (MQ=255)
gCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTaaaa < 2:1315997/93‑1 (MQ=255)
cTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTaaaaa > 1:2643379/1‑93 (MQ=255)
gCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACa > 2:4749913/1‑93 (MQ=255)
gCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACa < 1:5290058/93‑1 (MQ=255)
cTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑CGGGGTTTTTTTTGACCTTAAAAACATaa > 1:1852228/1‑93 (MQ=255)
tGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAAcc < 1:4080751/93‑1 (MQ=255)
tGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAAcc > 1:3938342/1‑93 (MQ=255)
gACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCga > 1:6572918/1‑93 (MQ=255)
aCGAGGAAAGGCTTAGAGATCAAGACTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGGTTTTTTTGCCCTTAAAAACATAACCgag > 1:5831881/1‑93 (MQ=255)
gAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCgagga < 1:2843750/93‑1 (MQ=255)
aGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCgaggag > 2:6145776/1‑93 (MQ=255)
ggAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGc > 1:10445/1‑93 (MQ=255)
aaGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGa < 1:3173729/93‑1 (MQ=255)
aGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGAc > 2:489740/1‑93 (MQ=255)
aGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGAc < 2:6607747/93‑1 (MQ=255)
ggCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACa > 2:2481732/1‑93 (MQ=255)
ggCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACa > 1:3859652/1‑93 (MQ=255)
cTTAGAGATCGAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAAt < 1:2522883/93‑1 (MQ=255)
ttAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATg > 1:749815/1‑93 (MQ=255)
agagATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGaa > 1:5784721/1‑93 (MQ=255)
agagATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGaa > 1:3618510/1‑93 (MQ=255)
gagaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAAt < 1:3752674/93‑1 (MQ=255)
agaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATa > 1:1679454/1‑93 (MQ=255)
agaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATa < 1:48296/93‑1 (MQ=255)
gaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATaa < 2:5085463/93‑1 (MQ=255)
gaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATaa < 2:1327322/93‑1 (MQ=255)
gaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATaa > 2:1598740/1‑93 (MQ=255)
aTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAAc < 2:6048477/93‑1 (MQ=255)
tCAAGCCTTAACGAACTAAGACCCCCGCACCGGAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACa > 2:2384135/1‑93 (MQ=255)
tCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCAGGGGTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAAc > 1:319832/1‑93 (MQ=255)
gCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGcac > 1:4396334/1‑93 (MQ=255)
gCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGcac > 2:6219056/1‑93 (MQ=255)
gCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGcaa > 2:4455482/1‑92 (MQ=255)
tAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACaaaa > 2:2790107/1‑93 (MQ=255)
tAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACaaaa > 2:649889/1‑93 (MQ=255)
cGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTc < 2:5232351/93‑1 (MQ=255)
aaCTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTg > 2:404539/1‑93 (MQ=255)
cTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGtt < 1:3821717/93‑1 (MQ=255)
cTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGtt < 1:4340158/93‑1 (MQ=255)
tAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGttt < 2:46277/93‑1 (MQ=255)
tAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGttt < 2:5007110/93‑1 (MQ=255)
tAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGttt > 2:291508/1‑93 (MQ=255)
aaGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTtc < 2:3658440/93‑1 (MQ=255)
aaGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTtc < 1:5665314/93‑1 (MQ=255)
aaGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTtc > 1:2678426/1‑93 (MQ=255)
aGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTtct > 2:4175260/1‑93 (MQ=255)
gACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTtctc > 2:3945025/1‑93 (MQ=255)
gACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTtctc > 2:811141/1‑93 (MQ=255)
gACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTtctc > 2:3302255/1‑93 (MQ=255)
gACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTtctc > 1:5300490/1‑93 (MQ=255)
cccccGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCaa > 2:3512629/1‑93 (MQ=255)
cccccGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCaa > 2:1814920/1‑93 (MQ=255)
ccccGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAg > 2:5915461/1‑93 (MQ=255)
cccGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGa > 1:634848/1‑93 (MQ=255)
cccGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGa > 2:6409630/1‑93 (MQ=255)
cGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGAtt > 1:2458684/1‑93 (MQ=255)
cACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCa < 1:2165882/93‑1 (MQ=255)
aCCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAg > 2:1194559/1‑93 (MQ=255)
ccGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAgg > 2:298590/1‑93 (MQ=255)
ccGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAgg > 1:678509/1‑93 (MQ=255)
ccGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAgg < 1:5461266/93‑1 (MQ=255)
cGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGa < 1:1063469/93‑1 (MQ=255)
cGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGa < 1:2301779/93‑1 (MQ=255)
cGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGa > 2:5434625/1‑93 (MQ=255)
cGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGa > 1:6424204/1‑93 (MQ=255)
cGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCACGa < 2:726967/93‑1 (MQ=255)
gAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGAc < 1:503562/93‑1 (MQ=255)
aaaGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACg > 2:64550/1‑93 (MQ=255)
aaaGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACg < 2:3574316/93‑1 (MQ=255)
aaGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACgg < 1:3580649/93‑1 (MQ=255)
aGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACggg > 1:3386045/1‑93 (MQ=255)
ggTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACgggg > 1:900444/1‑93 (MQ=255)
tCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGaa > 2:5127921/1‑93 (MQ=255)
|
TTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑GGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAA > NC_000913/3947997‑3948176
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑GGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAA > NC_000913/3947995‑3948180
|
GATTATTATCGCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AG < SRR4302547.6091105/94‑1 (MQ=60)
GATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGCCCCCCGCACCGAAAGGTCC‑AG < SRR4302547.6529373/94‑1 (MQ=60)
GATTATTACCCCACCGTGCGGGGCTGCACTTGTACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AG < SRR4302547.4796933/94‑1 (MQ=60)
ATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGG < SRR4302547.5561018/94‑1 (MQ=60)
TTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAGAGGTCC‑AGGG > SRR4302547.429369/1‑94 (MQ=60)
TTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGG > SRR4302547.3851356/1‑94 (MQ=60)
TTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGG < SRR4302547.6009962/94‑1 (MQ=60)
TTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGG > SRR4302547.6390936/1‑94 (MQ=60)
TTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTT < SRR4302547.125277/94‑1 (MQ=60)
TATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTT < SRR4302547.1186197/94‑1 (MQ=60)
TATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTT > SRR4302547.6199299/1‑94 (MQ=60)
ATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTT < SRR4302547.4815837/94‑1 (MQ=60)
ATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTT > SRR4302547.3779178/1‑94 (MQ=60)
TCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTT > SRR4302547.4495375/1‑94 (MQ=60)
CCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTT > SRR4302547.3843759/1‑94 (MQ=60)
CACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTT < SRR4302547.5748813/94‑1 (MQ=60)
CACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTT > SRR4302547.2431945/1‑94 (MQ=60)
ACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTG < SRR4302547.517785/94‑1 (MQ=60)
CGTGCGGGGCTGCACTTGCACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGAC > SRR4302547.2133451/1‑94 (MQ=60)
GTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACC > SRR4302547.5513016/1‑94 (MQ=60)
TGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCT > SRR4302547.4671876/1‑94 (MQ=60)
TGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGGTTTTTTTCACCT > SRR4302547.2995403/1‑94 (MQ=60)
CGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTA > SRR4302547.2069973/1‑94 (MQ=60)
CGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTA < SRR4302547.950458/94‑1 (MQ=60)
CGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTA < SRR4302547.5620683/94‑1 (MQ=60)
GGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAA > SRR4302547.6286941/1‑94 (MQ=60)
GGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAA > SRR4302547.1594527/1‑94 (MQ=60)
GCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAA > SRR4302547.2696577/1‑94 (MQ=60)
CTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAAC > SRR4302547.1293799/1‑94 (MQ=60)
GCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACAT < SRR4302547.5399183/94‑1 (MQ=60)
GCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACAT < SRR4302547.924887/94‑1 (MQ=60)
CACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATA > SRR4302547.6475213/1‑94 (MQ=60)
ACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑CGGGGTTTTTTTTGACCTTAAAAACATAA > SRR4302547.1888828/1‑94 (MQ=60)
CTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAAC < SRR4302547.732977/94‑1 (MQ=60)
TTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACC > SRR4302547.5794344/1‑94 (MQ=60)
TTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACC > SRR4302547.4018421/1‑94 (MQ=60)
TTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACC < SRR4302547.3353788/94‑1 (MQ=60)
TGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCG < SRR4302547.4163688/94‑1 (MQ=60)
TGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCG < SRR4302547.261371/94‑1 (MQ=60)
GGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGA < SRR4302547.5366709/94‑1 (MQ=60)
GGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGA > SRR4302547.6709762/1‑94 (MQ=60)
GACGAGGAAAGGCTTAGAGATCAAGACTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGGTTTTTTTGCCCTTAAAAACATAACCGAG > SRR4302547.5952554/1‑94 (MQ=60)
ACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGG < SRR4302547.1636854/94‑1 (MQ=60)
GAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAG < SRR4302547.2900571/94‑1 (MQ=60)
GAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAG < SRR4302547.392507/94‑1 (MQ=60)
AGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGC > SRR4302547.10639/1‑94 (MQ=60)
AGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGC > SRR4302547.5401458/1‑94 (MQ=60)
GGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCA < SRR4302547.3975374/94‑1 (MQ=60)
GGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCA > SRR4302547.2958071/1‑94 (MQ=60)
AAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGA > SRR4302547.4353686/1‑94 (MQ=60)
AAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGAC < SRR4302547.3236910/94‑1 (MQ=60)
AAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGAC > SRR4302547.2859082/1‑94 (MQ=60)
AGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACA > SRR4302547.4906910/1‑94 (MQ=60)
AGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACA > SRR4302547.3967568/1‑94 (MQ=60)
AGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACA > SRR4302547.3938199/1‑94 (MQ=60)
GGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGGTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAA > SRR4302547.5930719/1‑94 (MQ=60)
CTTAGAGATCGAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATG < SRR4302547.2573865/94‑1 (MQ=60)
CTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATG > SRR4302547.763952/1‑94 (MQ=60)
TAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAA > SRR4302547.5904372/1‑94 (MQ=60)
TAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAA > SRR4302547.3692327/1‑94 (MQ=60)
GAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATA < SRR4302547.3829252/94‑1 (MQ=60)
GAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATA > SRR4302547.1712524/1‑94 (MQ=60)
AAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATA < SRR4302547.1778083/94‑1 (MQ=60)
AGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAA < SRR4302547.49196/94‑1 (MQ=60)
GATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAAC > SRR4302547.3706272/1‑94 (MQ=60)
ATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCAGGGGTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAAC > SRR4302547.325783/1‑94 (MQ=60)
TCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAG > SRR4302547.5158493/1‑94 (MQ=60)
AAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCA > SRR4302547.1066879/1‑94 (MQ=60)
AAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCA > SRR4302547.3258038/1‑94 (MQ=60)
AAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCA > SRR4302547.3700033/1‑94 (MQ=60)
AGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCAC > SRR4302547.4486842/1‑94 (MQ=60)
GCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACA < SRR4302547.6924/94‑1 (MQ=60)
GCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACA > SRR4302547.4641902/1‑94 (MQ=60)
CTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAA > SRR4302547.2607409/1‑94 (MQ=60)
CTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAA > SRR4302547.2555614/1‑94 (MQ=60)
TTAACGAACTAAGTCCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAA < SRR4302547.6319599/94‑1 (MQ=60)
TAACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAAT < SRR4302547.4440820/94‑1 (MQ=60)
AACGAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATT < SRR4302547.2459292/94‑1 (MQ=60)
GAACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTG < SRR4302547.6687514/94‑1 (MQ=60)
AACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGT > SRR4302547.2485960/1‑94 (MQ=60)
ACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTT < SRR4302547.3499570/94‑1 (MQ=60)
ACTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTT > SRR4302547.3683639/1‑94 (MQ=60)
CTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTT < SRR4302547.3899589/94‑1 (MQ=60)
CTAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTT < SRR4302547.4429415/94‑1 (MQ=60)
TAAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTC > SRR4302547.2732215/1‑94 (MQ=60)
AAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCT < SRR4302547.5782286/94‑1 (MQ=60)
AAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCT > SRR4302547.358574/1‑94 (MQ=60)
AAGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCT < SRR4302547.4029224/94‑1 (MQ=60)
AGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTC > SRR4302547.5409848/1‑94 (MQ=60)
AGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTC > SRR4302547.2112134/1‑94 (MQ=60)
AGACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTC > SRR4302547.5727115/1‑94 (MQ=60)
GACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCA > SRR4302547.1893563/1‑94 (MQ=60)
GACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCA < SRR4302547.4952038/94‑1 (MQ=60)
ACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAA > SRR4302547.5295428/1‑94 (MQ=60)
ACCCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAA > SRR4302547.6414437/1‑94 (MQ=60)
CCCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGA > SRR4302547.646571/1‑94 (MQ=60)
CCCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGAT < SRR4302547.4907747/94‑1 (MQ=60)
CCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATT < SRR4302547.1534003/94‑1 (MQ=60)
CCGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATT > SRR4302547.2508367/1‑94 (MQ=60)
CGCACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTA > SRR4302547.5775937/1‑94 (MQ=60)
CACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAG > SRR4302547.2700534/1‑94 (MQ=60)
CACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAG < SRR4302547.3779471/94‑1 (MQ=60)
CACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAG < SRR4302547.2209199/94‑1 (MQ=60)
ACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGG > SRR4302547.691009/1‑94 (MQ=60)
ACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGG > SRR4302547.5710237/1‑94 (MQ=60)
ACCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGG > SRR4302547.6007374/1‑94 (MQ=60)
CCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGA > SRR4302547.438479/1‑94 (MQ=60)
CCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGA > SRR4302547.5462235/1‑94 (MQ=60)
CCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGA > SRR4302547.6558135/1‑94 (MQ=60)
CCGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGA < SRR4302547.5574086/94‑1 (MQ=60)
CGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGAC < SRR4302547.1084631/94‑1 (MQ=60)
CGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGAC < SRR4302547.4175518/94‑1 (MQ=60)
CGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGAC > SRR4302547.5581720/1‑94 (MQ=60)
CGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGAC > SRR4302547.4686849/1‑94 (MQ=60)
CGAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGAC < SRR4302547.2348423/94‑1 (MQ=60)
GAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACG < SRR4302547.6116569/94‑1 (MQ=60)
GAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACG > SRR4302547.2394560/1‑94 (MQ=60)
GAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACG < SRR4302547.6601607/94‑1 (MQ=60)
GAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACG < SRR4302547.512725/94‑1 (MQ=60)
GAAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACG > SRR4302547.6770504/1‑94 (MQ=60)
AAAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGG > SRR4302547.3155292/1‑94 (MQ=60)
AAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGG > SRR4302547.3454918/1‑94 (MQ=60)
AAGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGG < SRR4302547.3653697/94‑1 (MQ=60)
AGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGG > SRR4302547.917774/1‑94 (MQ=60)
AGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGG < SRR4302547.1880690/94‑1 (MQ=60)
AGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGG < SRR4302547.6553006/94‑1 (MQ=60)
AGGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCAAAAAATTCTGTTTCTCAAGATTCAGGACGGGG < SRR4302547.3174697/94‑1 (MQ=60)
GGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGA < SRR4302547.900986/94‑1 (MQ=60)
GGTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGA < SRR4302547.2878924/94‑1 (MQ=60)
GTCC‑AGGGTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAA < SRR4302547.5890570/94‑1 (MQ=60)
GTCC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAA < SRR4302547.2272645/94‑1 (MQ=60)
CC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACT > SRR4302547.2011612/1‑94 (MQ=60)
CC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACT > SRR4302547.5952156/1‑94 (MQ=60)
CC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACT > SRR4302547.6098621/1‑94 (MQ=60)
CC‑AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACT > SRR4302547.5237664/1‑94 (MQ=60)
AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAA > SRR4302547.5268314/1‑94 (MQ=60)
AGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAA > SRR4302547.6102112/1‑94 (MQ=60)
|
GATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑GGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAA > NC_000913/3947995‑3948180
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
