Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,560 |
+C |
intergenic (‑129/‑732) |
ppiC ← / → rep |
peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,558 | 1 | . | C | 99.5%
| 674.2
/ ‑5.7
| 182 | intergenic (‑127/‑734) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (1/0); major base C (72/108); minor base G (1/0); total (74/108) |
| Fisher's exact test for biased strand distribution p-value = 4.03e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 193 total aligned reads displayed.
TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑T‑G‑‑C‑TCGCA‑GG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATG > NC_000913/3957470‑3957645
|
tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑GGG‑‑CTTCGCA‑GG‑T‑cc < 2:3319656/93‑1 (MQ=255)
gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑T‑ccct > 1:650388/1‑91 (MQ=255)
aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAgg < 2:3847279/93‑1 (MQ=255)
aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAgg > 1:2837306/1‑93 (MQ=255)
tctgCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAggg < 1:876935/90‑1 (MQ=255)
ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAgggg < 2:4220014/93‑1 (MQ=255)
cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGga < 1:3135246/93‑1 (MQ=255)
gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGgag > 2:6262039/1‑93 (MQ=255)
cAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGGAAAAGACCGGAAAATACG‑G‑G‑‑CTTCGCA‑GGTT‑CCTCCAGGGgaga > 2:6163289/1‑93 (MQ=255)
cAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGgaga < 2:5361189/93‑1 (MQ=255)
aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCC‑GG‑TCCCTCAAGGGgagga > 2:2305852/1‑91 (MQ=255)
aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGaa > 1:5775499/1‑93 (MQ=255)
aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGaa > 2:2445778/1‑93 (MQ=255)
aGATCCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGCCAAAACCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGaa < 1:3852484/93‑1 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGGAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGaaa > 2:2896044/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGaaa > 2:1968274/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGACCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TGCCTCAAGGGGAGaaa > 1:2211306/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGaaa > 1:6114505/1‑93 (MQ=255)
aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGGCCGGAAAAT‑CCGG‑G‑‑CTTCGCAGGG‑C‑CCTCAAGGGGAGaaaa > 2:3897634/1‑93 (MQ=255)
tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAAc > 2:5008172/1‑93 (MQ=255)
agCTAACTTATTGATCAGTCAGGGAGTGGCTGGTACATATAGGGCAAAAGCCCGGAAATT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAAc < 2:5637771/92‑1 (MQ=255)
gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACt > 1:3254232/1‑93 (MQ=255)
gCTAACGTAATGGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAATT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACt < 1:5724125/93‑1 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACtt < 1:1006674/93‑1 (MQ=255)
tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTa > 1:4575489/1‑93 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAgg < 2:1380534/93‑1 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑GGG‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAgg < 1:1552228/93‑1 (MQ=255)
cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑G‑GT‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAggg < 1:2046670/93‑1 (MQ=255)
gTAATGGACGGTCAGGGAGTGGCTGGTACATATATGGCAAAGACCCGGAAAAT‑CC‑G‑GGTT‑TCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGc < 2:2337786/93‑1 (MQ=255)
aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCct < 2:584972/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:4297666/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:4565961/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:2650801/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:3897507/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 1:5604708/93‑1 (MQ=255)
tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑TGG‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg < 1:6604630/93‑1 (MQ=255)
gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 1:410919/93‑1 (MQ=255)
gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc > 1:1742818/1‑93 (MQ=255)
cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa < 2:334794/93‑1 (MQ=255)
cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa > 1:6577824/1‑93 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGT‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc < 2:2379296/93‑1 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 1:1829820/1‑93 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 2:492348/1‑93 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc < 2:6024595/93‑1 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 1:5315852/1‑93 (MQ=255)
ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑GGG‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa > 2:6578645/1‑93 (MQ=255)
ggTGGCGTGTACATATATGGCAAAAGCACGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg < 2:1217518/92‑1 (MQ=255)
aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg < 1:809175/93‑1 (MQ=255)
aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg > 1:4474624/1‑93 (MQ=255)
aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg < 2:5423239/93‑1 (MQ=255)
tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc < 1:5971861/93‑1 (MQ=255)
tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc < 1:5634565/93‑1 (MQ=255)
ggCTGTTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 1:5760901/93‑1 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 2:4313549/93‑1 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa > 2:3135399/1‑93 (MQ=255)
gCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt < 2:821177/93‑1 (MQ=255)
cTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 2:1322165/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 1:6445970/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:2424980/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:531511/93‑1 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 2:6354216/93‑1 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 1:5535285/93‑1 (MQ=255)
aCATATATGGCAAAAGCGGGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 1:3578502/93‑1 (MQ=255)
aCATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 2:5816970/93‑1 (MQ=255)
aCATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 2:710739/93‑1 (MQ=255)
atatatGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg < 2:1635327/93‑1 (MQ=255)
tatatGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa > 2:3672089/1‑93 (MQ=255)
tatatGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa < 2:3270969/93‑1 (MQ=255)
tatatGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa < 1:6182380/93‑1 (MQ=255)
atatGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 1:1459898/93‑1 (MQ=255)
tatGGCAAAAGCCAAGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 1:1038765/93‑1 (MQ=255)
tGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 2:5288288/1‑93 (MQ=255)
ggCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt < 2:3382569/93‑1 (MQ=255)
gCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta > 2:3486381/1‑93 (MQ=255)
gCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta < 1:6243739/93‑1 (MQ=255)
aaaaGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 2:3556427/1‑93 (MQ=255)
aaaaGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 1:5208032/1‑93 (MQ=255)
aaaGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt > 1:3340570/1‑93 (MQ=255)
aaaGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt > 2:1174959/1‑93 (MQ=255)
aaaGCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt < 2:1696983/93‑1 (MQ=255)
gCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat < 2:3820092/93‑1 (MQ=255)
gCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat > 2:4048752/1‑93 (MQ=255)
gCCCGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat < 1:1269963/93‑1 (MQ=255)
gCCCGGAAAAT‑CC‑GGG‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttcttttat > 2:2087674/1‑93 (MQ=255)
cccGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 2:5189173/93‑1 (MQ=255)
ccGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 1:5105805/1‑93 (MQ=255)
ccGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg < 1:3376220/93‑1 (MQ=255)
cGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGt > 1:1062003/1‑93 (MQ=255)
cGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGt < 1:2284446/93‑1 (MQ=255)
cGGAAAAT‑CCGG‑G‑‑CTTCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGCCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGt > 2:6219200/1‑93 (MQ=255)
ggcttCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAg < 2:1101157/89‑1 (MQ=255)
gcttCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGc < 2:4271958/90‑1 (MQ=255)
gcttCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGc < 1:327259/90‑1 (MQ=255)
gcttCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGc < 1:2619742/90‑1 (MQ=255)
cttCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCg < 1:4275839/91‑1 (MQ=255)
ttCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGa < 2:6325908/92‑1 (MQ=255)
ttCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGa > 1:5714670/2‑93 (MQ=255)
ttCGCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGa < 2:4487270/92‑1 (MQ=255)
gCA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGatat > 2:4651316/1‑93 (MQ=255)
cA‑GG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATg > 2:1561016/1‑93 (MQ=255)
|
TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑T‑G‑‑C‑TCGCA‑GG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATG > NC_000913/3957470‑3957645
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑TG‑‑CTCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTGAT > NC_000913/3957478‑3957653
|
TCTGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGG < SRR4302547.893775/94‑1 (MQ=60)
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGG < SRR4302547.2624105/94‑1 (MQ=60)
TCCGCAGATACTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGG < SRR4302547.6732944/94‑1 (MQ=60)
CGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAG < SRR4302547.3197504/94‑1 (MQ=60)
CAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAA > SRR4302547.5894955/1‑94 (MQ=60)
CAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCCAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAA > SRR4302547.2309566/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAA > SRR4302547.5662170/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAA > SRR4302547.5851493/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGACCGGAAAATCC‑‑GGGCTTCGCAGGTGCCTCAAGGGGAGAAA > SRR4302547.2255773/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAA > SRR4302547.6241343/1‑94 (MQ=60)
AGATCCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGCCAAAACCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAA < SRR4302547.3930913/94‑1 (MQ=57)
ATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAAC < SRR4302547.1658572/94‑1 (MQ=60)
TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACT > SRR4302547.3319253/1‑94 (MQ=60)
GCTAACGTAATGGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAATTCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTT < SRR4302547.5842366/94‑1 (MQ=60)
CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTA > SRR4302547.4670195/1‑94 (MQ=60)
CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTA < SRR4302547.1026327/94‑1 (MQ=60)
ACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGG < SRR4302547.6745386/94‑1 (MQ=60)
ACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGG < SRR4302547.1583123/94‑1 (MQ=60)
CGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGTC‑‑TTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGC < SRR4302547.2087495/94‑1 (MQ=60)
ATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCT < SRR4302547.6277668/94‑1 (MQ=60)
TTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTA < SRR4302547.2245494/94‑1 (MQ=60)
TGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAT < SRR4302547.5720335/94‑1 (MQ=60)
TGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGAAGAAAACTTAGGGCCTCTAT < SRR4302547.6597061/94‑1 (MQ=60)
GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATG > SRR4302547.1953503/1‑94 (MQ=60)
GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATG > SRR4302547.3411460/1‑94 (MQ=60)
TCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑TGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGG < SRR4302547.6742115/94‑1 (MQ=60)
TCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGG < SRR4302547.5882116/94‑1 (MQ=60)
AGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGC > SRR4302547.1777130/1‑94 (MQ=60)
GTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT < SRR4302547.418542/94‑1 (MQ=60)
TCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCCAGGGGAGAAAACTTAGGGCCTCTATGGGCTA > SRR4302547.3984597/1‑94 (MQ=60)
TCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTA > SRR4302547.6714792/1‑94 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302547.5425470/1‑94 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302547.1865986/1‑94 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302547.6664352/1‑94 (MQ=60)
GAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAG > SRR4302547.4567070/1‑94 (MQ=60)
AGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGT < SRR4302547.824506/94‑1 (MQ=60)
TGTCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA < SRR4302547.461064/94‑1 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA < SRR4302547.6095717/94‑1 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA > SRR4302547.2767560/1‑94 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA < SRR4302547.3389640/94‑1 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA < SRR4302547.6451498/94‑1 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA > SRR4302547.3571968/1‑94 (MQ=60)
TGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA < SRR4302547.5750849/94‑1 (MQ=60)
GGCTGTTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAT < SRR4302547.5880042/94‑1 (MQ=60)
GCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATT > SRR4302547.6333544/1‑94 (MQ=60)
TGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT > SRR4302547.1119370/1‑94 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302547.5401775/94‑1 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302547.6580279/94‑1 (MQ=60)
GTACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCG < SRR4302547.5649525/94‑1 (MQ=60)
ACATATATGGCAAAAGCGGGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG < SRR4302547.3651497/94‑1 (MQ=60)
ACATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG < SRR4302547.582220/94‑1 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG > SRR4302547.1346109/1‑94 (MQ=60)
CATATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG < SRR4302547.561569/94‑1 (MQ=60)
aaaataggcaaaacccgagaaaacgcggcgctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG < SRR4302547.3776121/62‑1 (MQ=60)
TATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAT < SRR4302547.6310699/94‑1 (MQ=60)
ATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG > SRR4302547.3816666/1‑94 (MQ=60)
ATATGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG < SRR4302547.1489071/94‑1 (MQ=60)
TATGGCAAAAGCCAAGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGG < SRR4302547.1059235/94‑1 (MQ=60)
TGGCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTT < SRR4302547.5054815/94‑1 (MQ=60)
GCAAAAGCGCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT < SRR4302547.5229566/94‑1 (MQ=60)
GCAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT < SRR4302547.6373442/94‑1 (MQ=60)
CAAAAGCCGGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT < SRR4302547.5755769/94‑1 (MQ=60)
CAAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT > SRR4302547.5315208/1‑94 (MQ=60)
AAAAGCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTT > SRR4302547.3408177/1‑94 (MQ=60)
GCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATT < SRR4302547.1295538/94‑1 (MQ=60)
GCCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATT < SRR4302547.1490522/94‑1 (MQ=60)
CCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > SRR4302547.5211032/1‑94 (MQ=60)
CCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG < SRR4302547.2915016/94‑1 (MQ=60)
CCCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > SRR4302547.4196356/1‑94 (MQ=60)
CCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT < SRR4302547.3444816/94‑1 (MQ=60)
CCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT > SRR4302547.1083137/1‑94 (MQ=60)
CCGGAAAATCC‑‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT < SRR4302547.6023972/94‑1 (MQ=60)
cccggaaaacccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG < SRR4302547.4733827/77‑1 (MQ=60)
cggaaaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTC < SRR4302547.2330696/79‑1 (MQ=60)
cggaaaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTC < SRR4302547.4494477/79‑1 (MQ=60)
aaaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAAT < SRR4302547.5547372/82‑1 (MQ=60)
aaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT > SRR4302547.2273568/12‑94 (MQ=60)
aaatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT > SRR4302547.4248796/12‑94 (MQ=60)
aatccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTT > SRR4302547.3213984/11‑94 (MQ=60)
atccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA > SRR4302547.5919864/10‑94 (MQ=60)
atccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA > SRR4302547.658942/10‑94 (MQ=60)
atccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA > SRR4302547.6027145/10‑94 (MQ=60)
atccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA > SRR4302547.2578655/10‑94 (MQ=60)
tccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTCCAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTAT < SRR4302547.818871/86‑1 (MQ=60)
ccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG < SRR4302547.3942036/87‑1 (MQ=60)
ccgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG < SRR4302547.3189580/87‑1 (MQ=60)
cgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA > SRR4302547.364942/7‑94 (MQ=60)
cgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA < SRR4302547.856765/88‑1 (MQ=60)
cgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA > SRR4302547.3758275/7‑94 (MQ=60)
cgggctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA < SRR4302547.372754/88‑1 (MQ=60)
gctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCG < SRR4302547.2672527/91‑1 (MQ=60)
gctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCG < SRR4302547.333348/91‑1 (MQ=60)
gctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCG < SRR4302547.1812908/91‑1 (MQ=60)
ctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA < SRR4302547.4363651/92‑1 (MQ=60)
ctTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA > SRR4302547.5832699/3‑94 (MQ=60)
TTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT < SRR4302547.1081097/94‑1 (MQ=60)
TTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT < SRR4302547.6115480/94‑1 (MQ=60)
AGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGTGATATGGC > SRR4302547.1510067/1‑94 (MQ=60)
AGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGC > SRR4302547.1904487/1‑94 (MQ=60)
AGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGC > SRR4302547.3776601/1‑94 (MQ=60)
AGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGC > SRR4302547.1093360/1‑94 (MQ=60)
GGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCA < SRR4302547.5786143/94‑1 (MQ=60)
gtcCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCAT < SRR4302547.5306192/91‑1 (MQ=60)
gtcCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCAT < SRR4302547.87726/91‑1 (MQ=60)
tcCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATT > SRR4302547.584544/3‑94 (MQ=60)
CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTGAT < SRR4302547.4623572/94‑1 (MQ=60)
CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGACATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGGGATATGGCATTGAT > SRR4302547.2427965/1‑94 (MQ=60)
|
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑‑TG‑‑CTCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTGAT > NC_000913/3957478‑3957653
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
