Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,473 |
+G |
intergenic (+40/‑193) |
b4555 → / → yigM |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,472 | 1 | . | G | 97.6%
| 582.2
/ 5.5
| 165 | intergenic (+39/‑194) | b4555/yigM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (4/0); new base G (86/75); total (90/75) |
| Fisher's exact test for biased strand distribution p-value = 1.27e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 |
Only 100 of 167 total aligned reads displayed.
AACTGGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGAA‑A‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGC > NC_000913/4008399‑4008558
|
actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATggg < 1:6583209/89‑1 (MQ=255)
actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATggg < 2:2071073/89‑1 (MQ=255)
actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATggg < 2:2992138/89‑1 (MQ=255)
actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATggg > 1:409368/5‑93 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGc > 1:2280110/4‑93 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGc > 1:4536471/4‑93 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAg < 2:2523121/92‑1 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAg < 1:2402609/92‑1 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAg > 2:3677025/2‑93 (MQ=255)
ggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGt > 2:6397383/1‑93 (MQ=255)
gCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTg > 2:786339/1‑93 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCGTTTGGTGGCGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTgc < 2:1228998/93‑2 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTgc < 2:795572/93‑2 (MQ=255)
tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTgcg > 2:1902341/1‑91 (MQ=255)
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGGAA‑G‑GCTGCATTATGGGCAGTGCgcacc > 1:5931997/3‑93 (MQ=255)
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCgcacc > 2:3643001/3‑93 (MQ=255)
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCgcacc > 2:5720606/3‑93 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGGAACG‑GCTGCATTATGGGCAGAGCgcacca > 2:856378/1‑93 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAg < 1:5836693/93‑1 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAg < 1:4041548/93‑1 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGc > 2:2011403/1‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGc < 1:5078385/93‑1 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGc > 1:866450/1‑93 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCg < 2:410613/93‑1 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCg > 1:4902761/1‑93 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCg > 2:3864395/1‑93 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGTCAGTGCGCACCAGCGtt > 1:1197039/1‑92 (MQ=255)
tttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAt < 2:5152570/89‑1 (MQ=255)
tttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAt > 2:6403989/5‑93 (MQ=255)
tttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAt < 1:1056897/89‑1 (MQ=255)
ttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATc < 2:335385/90‑1 (MQ=255)
ttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATc > 2:4167514/4‑93 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAGCTTCATcc > 2:2521224/3‑93 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc < 2:3941578/91‑1 (MQ=255)
ggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATccc > 2:4886988/2‑93 (MQ=255)
gtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCg < 1:921788/93‑1 (MQ=255)
tgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGa > 1:2185073/1‑93 (MQ=255)
tgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATCATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGa > 2:6247931/1‑93 (MQ=255)
aCGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGc < 2:1770585/93‑1 (MQ=255)
aCGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGc > 2:931356/1‑93 (MQ=255)
cGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCt < 1:737491/93‑1 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gg > 1:3896910/1‑92 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gg > 2:2527060/1‑92 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gg > 1:5501570/1‑92 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gg > 2:172112/1‑92 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gga > 2:5522726/1‑91 (MQ=255)
aTGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaa < 1:302638/93‑4 (MQ=255)
tGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaag < 1:1068601/93‑5 (MQ=255)
tGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaag > 2:2414163/1‑89 (MQ=255)
aaCGACGCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTg > 2:2852590/1‑93 (MQ=255)
acgacgCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa < 1:1753517/93‑1 (MQ=255)
acgacgCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa < 2:5431799/93‑1 (MQ=255)
cgacgCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAt < 1:3177658/93‑1 (MQ=255)
cgacgCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAt > 1:5113939/1‑93 (MQ=255)
cgacgCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAt > 2:3203999/1‑93 (MQ=255)
gacgCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCCCCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt < 2:6547914/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt < 2:3756621/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt < 1:2244435/93‑1 (MQ=255)
acgCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg < 2:4805245/93‑1 (MQ=255)
acgCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg > 2:515563/1‑93 (MQ=255)
cgCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTgg < 2:5347832/93‑1 (MQ=255)
gCCGAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGt > 1:1206236/1‑93 (MQ=255)
gAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 1:1742587/1‑93 (MQ=255)
gAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 1:2977761/1‑93 (MQ=255)
gAAATGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 2:608246/1‑93 (MQ=255)
aaaTGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTa > 2:3050470/1‑93 (MQ=255)
aaTGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa > 1:535230/1‑93 (MQ=255)
aTGCTGTTGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt < 2:5670322/93‑1 (MQ=255)
aTGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt < 2:2542082/93‑1 (MQ=255)
aTGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt < 2:3317426/93‑1 (MQ=255)
tGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATg < 2:5953053/93‑1 (MQ=255)
tGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATg < 1:6184572/93‑1 (MQ=255)
tGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATg > 2:6099992/1‑93 (MQ=255)
tGCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATg > 2:4729384/1‑93 (MQ=255)
gCTGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGc < 1:2924265/93‑1 (MQ=255)
tGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg < 2:3704378/93‑1 (MQ=255)
tGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg > 1:6401371/1‑93 (MQ=255)
tGTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg > 1:3625383/1‑93 (MQ=255)
gTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga < 1:3422428/93‑1 (MQ=255)
gTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga < 1:4260896/93‑1 (MQ=255)
gTCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga < 1:5663612/93‑1 (MQ=255)
tCGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgac < 2:3028737/93‑1 (MQ=255)
cGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacg < 1:3548998/93‑1 (MQ=255)
cGATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacg > 1:523193/1‑93 (MQ=255)
gATGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga > 2:1573723/1‑93 (MQ=255)
aTGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac > 1:168750/1‑93 (MQ=255)
aTGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac > 1:499561/1‑93 (MQ=255)
aTGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac < 2:1135102/93‑1 (MQ=255)
aTGGCG‑GGGAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac > 1:5701826/1‑93 (MQ=255)
ggcggggAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAcgc > 1:4753811/5‑93 (MQ=255)
ggcggggAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAcgc < 1:4408746/89‑1 (MQ=255)
gcggggAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAcgcg > 1:558129/4‑93 (MQ=255)
gcggggAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAcgcg > 2:452360/4‑93 (MQ=255)
gcggggAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAcgcg > 1:1820823/4‑93 (MQ=255)
cggggAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCgg > 2:1961610/3‑93 (MQ=255)
cggggAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCgg < 2:5793374/91‑1 (MQ=255)
ggggAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGt < 1:2670173/92‑1 (MQ=255)
ggggAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGt < 2:3844288/92‑1 (MQ=255)
ggAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGc > 1:4608500/1‑93 (MQ=255)
ggAA‑AGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGc < 2:3052035/93‑1 (MQ=255)
|
AACTGGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGAA‑A‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGC > NC_000913/4008399‑4008558
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGAAGGCTGGCGAACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTA > NC_000913/4008386‑4008565
|
gcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGG‑‑AAA‑G < SRR4302547.6469044/76‑1 (MQ=53)
cgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCAT > SRR4302547.3029754/12‑94 (MQ=49)
cgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCAT > SRR4302547.150802/12‑94 (MQ=49)
gaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATT < SRR4302547.1565438/84‑1 (MQ=49)
agaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTAT > SRR4302547.317162/9‑94 (MQ=48)
agaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTAT < SRR4302547.1464405/86‑1 (MQ=48)
aaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAT‑GCTGCATTATGG > SRR4302547.6655329/7‑94 (MQ=51)
aaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGG > SRR4302547.1461169/7‑94 (MQ=51)
AACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGG < SRR4302547.2488394/94‑1 (MQ=50)
AACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGG > SRR4302547.416958/1‑94 (MQ=50)
ACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGC > SRR4302547.2326261/1‑94 (MQ=53)
ACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGC < SRR4302547.6720289/94‑1 (MQ=53)
ACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGC > SRR4302547.4630228/1‑94 (MQ=53)
tgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAG > SRR4302547.2282460/3‑94 (MQ=58)
G‑GGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGT < SRR4302547.2451268/94‑1 (MQ=60)
GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGC < SRR4302547.2571947/94‑1 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGcg > SRR4302547.5390136/1‑92 (MQ=60)
TACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgc > SRR4302547.337459/1‑91 (MQ=60)
ACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgca < SRR4302547.4871808/94‑5 (MQ=60)
agcctgaaggtctgtattgcgtttggtgtcggggTGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgcgcc > SRR4302547.6218006/35‑88 (MQ=54)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGG‑‑AAG‑GCTGGATTATGGGCAGTGCGCACC > SRR4302547.5720488/4‑94 (MQ=50)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGG‑‑AAG‑GCTGCATTATGGGCAGTGCGCACC > SRR4302547.6054993/4‑94 (MQ=60)
gcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCA < SRR4302547.3407643/92‑1 (MQ=60)
C‑CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAG < SRR4302547.6362301/94‑1 (MQ=60)
C‑CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAG < SRR4302547.5392178/94‑1 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC > SRR4302547.5024625/1‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC < SRR4302547.4123631/94‑1 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC < SRR4302547.5957459/94‑1 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC > SRR4302547.883027/1‑94 (MQ=60)
TGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG > SRR4302547.3313888/1‑94 (MQ=57)
TGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG < SRR4302547.5183144/94‑1 (MQ=57)
TGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG > SRR4302547.5004293/1‑94 (MQ=57)
AAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGTCAGTGCGCACCAGCGTT > SRR4302547.1221192/1‑94 (MQ=44)
AAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTC > SRR4302547.1874931/1‑94 (MQ=57)
AGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCT < SRR4302547.6046996/94‑1 (MQ=57)
AGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCT < SRR4302547.4432855/94‑1 (MQ=57)
gggtggtattgcgtttgGTGACGAGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGaatgtcaagttcggaagagc < SRR4302547.1842452/77‑21 (MQ=45)
GGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTG > SRR4302547.2076823/1‑94 (MQ=60)
tgtattgcgtttgGTGACGGTATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAG < SRR4302547.4865767/81‑1 (MQ=60)
tgtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAG > SRR4302547.1805044/14‑94 (MQ=60)
gtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGA > SRR4302547.3204810/13‑94 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGCAAG‑GCTGCATTATGGGCAGTGCGCACCAGAGTCTGAAAGAC > SRR4302547.4030477/1‑94 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC > SRR4302547.3631094/1‑94 (MQ=60)
ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACC > SRR4302547.5565756/1‑94 (MQ=60)
TGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTT > SRR4302547.4729456/1‑94 (MQ=60)
GCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTC > SRR4302547.1853310/1‑94 (MQ=60)
CGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA > SRR4302547.4292256/1‑94 (MQ=60)
CGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA > SRR4302547.6644422/1‑94 (MQ=60)
CGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA > SRR4302547.1029109/1‑94 (MQ=60)
gtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAT < SRR4302547.3100901/89‑1 (MQ=60)
gtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAT < SRR4302547.1779384/89‑1 (MQ=60)
gtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAT < SRR4302547.6373042/89‑1 (MQ=60)
tttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATC < SRR4302547.1077919/90‑1 (MQ=60)
TG‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCC < SRR4302547.5692588/94‑1 (MQ=60)
GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGA < SRR4302547.939594/94‑1 (MQ=60)
GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGA > SRR4302547.2228876/1‑94 (MQ=60)
GACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCACCCCGAGC > SRR4302547.811310/1‑94 (MQ=60)
CGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G < SRR4302547.751299/94‑1 (MQ=60)
CGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G > SRR4302547.5830561/1‑94 (MQ=60)
GGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GG > SRR4302547.3976144/1‑94 (MQ=60)
GGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GG > SRR4302547.5615165/1‑94 (MQ=60)
ATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAG < SRR4302547.308281/94‑1 (MQ=60)
TGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGT < SRR4302547.1089880/94‑1 (MQ=60)
AACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGA > SRR4302547.1198134/1‑94 (MQ=60)
ACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAT > SRR4302547.5219323/1‑94 (MQ=60)
ACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAT < SRR4302547.1788185/94‑1 (MQ=60)
CGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATT < SRR4302547.3240957/94‑1 (MQ=60)
GACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTG < SRR4302547.2289714/94‑1 (MQ=60)
GACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTG < SRR4302547.888404/94‑1 (MQ=60)
CGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGT > SRR4302547.1230577/1‑94 (MQ=60)
CGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACT < SRR4302547.469134/94‑1 (MQ=60)
CGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACT > SRR4302547.1776886/1‑94 (MQ=60)
CGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACT > SRR4302547.1224111/1‑94 (MQ=60)
CGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACT > SRR4302547.3037007/1‑94 (MQ=60)
GAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTA > SRR4302547.5253826/1‑94 (MQ=60)
AAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAA > SRR4302547.544902/1‑94 (MQ=60)
TGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGC < SRR4302547.6312935/94‑1 (MQ=60)
GCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCC < SRR4302547.2982575/94‑1 (MQ=60)
GCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCC > SRR4302547.1778203/1‑94 (MQ=60)
CTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG > SRR4302547.3699325/1‑94 (MQ=60)
CTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG < SRR4302547.4725225/94‑1 (MQ=60)
CTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG > SRR4302547.4185309/1‑94 (MQ=60)
CTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG < SRR4302547.3606970/94‑1 (MQ=60)
CTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG > SRR4302547.6534897/1‑94 (MQ=60)
CGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGA < SRR4302547.516194/94‑1 (MQ=60)
GTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGAC < SRR4302547.4348088/94‑1 (MQ=60)
GTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGAC < SRR4302547.5780534/94‑1 (MQ=60)
GTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGAC < SRR4302547.3492111/94‑1 (MQ=60)
TCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACG > SRR4302547.532665/1‑94 (MQ=60)
CGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGA < SRR4302547.3621421/94‑1 (MQ=60)
GATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC > SRR4302547.171841/1‑94 (MQ=60)
GATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC < SRR4302547.6580736/94‑1 (MQ=60)
GATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC > SRR4302547.5819606/1‑94 (MQ=60)
GATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC > SRR4302547.508670/1‑94 (MQ=60)
ATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACG > SRR4302547.5767409/1‑94 (MQ=60)
TGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGC > SRR4302547.3747605/1‑94 (MQ=60)
TGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGC > SRR4302547.4852321/1‑94 (MQ=60)
GGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCG > SRR4302547.1856817/1‑94 (MQ=60)
GGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCG < SRR4302547.4499608/94‑1 (MQ=60)
GGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCG > SRR4302547.568183/1‑94 (MQ=60)
gcggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGG > SRR4302547.305855/11‑94 (MQ=60)
gcggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGG > SRR4302547.2430988/11‑94 (MQ=60)
cggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGT > SRR4302547.1739451/10‑94 (MQ=60)
cggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGT < SRR4302547.4111755/85‑1 (MQ=60)
GGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGC > SRR4302547.4703879/1‑94 (MQ=60)
GGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGC > SRR4302547.2985126/1‑94 (MQ=60)
ggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTG < SRR4302547.6443764/86‑1 (MQ=60)
ggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTG < SRR4302547.2723814/86‑1 (MQ=60)
AAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCA > SRR4302547.6556496/1‑94 (MQ=60)
AAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCA > SRR4302547.2785673/1‑94 (MQ=60)
AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTGCTAATGCCGACGACGCGGTGCCGC < SRR4302547.4794351/94‑1 (MQ=60)
AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGC < SRR4302547.6712459/94‑1 (MQ=60)
AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGC > SRR4302547.5440187/1‑94 (MQ=60)
G‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATT < SRR4302547.4378874/94‑1 (MQ=60)
GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTA < SRR4302547.3055973/94‑1 (MQ=60)
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TGGAAGGCTGGCGAACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTA > NC_000913/4008386‑4008565
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
