Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,051,170 |
+C |
intergenic (+172/+279) |
hemN → / ← glnG |
O2‑independent coproporphyrinogen III oxidase/GlnG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,051,170 | 1 | . | C | 99.6%
| 663.5
/ ‑3.7
| 220 | intergenic (+172/+279) | hemN/glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (127/92); total (128/92) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.35e-01 |
Only 100 of 237 total aligned reads displayed.
TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGC‑G‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACA > NC_000913/4051077‑4051256
|
tGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggc‑g < 1:5028865/93‑1 (MQ=255)
gggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggc‑gc < 2:699863/93‑2 (MQ=255)
gggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggc‑gc < 1:3990507/93‑2 (MQ=255)
ggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggc‑gct < 2:1481439/93‑3 (MQ=255)
ggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggc‑gct < 2:4467719/93‑3 (MQ=255)
ggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggc‑gct > 1:2446675/1‑91 (MQ=255)
caaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTcg > 2:3089873/1‑93 (MQ=25)
aaaCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTcgcg < 1:2211932/93‑1 (MQ=25)
aaaCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTcgcg > 1:2252397/1‑93 (MQ=25)
aCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTc < 1:4556791/93‑1 (MQ=21)
aCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTc > 2:3536493/1‑93 (MQ=21)
aCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTc < 1:5723130/93‑1 (MQ=21)
aCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTc > 2:4959301/1‑93 (MQ=21)
ccTGTTGAAATTATTGCTTTTGTATGCCGGATAAGGCGTTTATGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCTCGTCt > 2:1511436/1‑93 (MQ=25)
ccTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCt < 2:6043313/93‑1 (MQ=21)
ccTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCt < 1:3544659/93‑1 (MQ=21)
tGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTa < 2:1365266/93‑1 (MQ=21)
tGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTa > 2:2752205/1‑93 (MQ=21)
tGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTa > 1:1389376/1‑93 (MQ=21)
gTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTAt > 1:851492/1‑93 (MQ=21)
gAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAg < 2:3912968/93‑1 (MQ=18)
gAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAg > 2:460296/1‑93 (MQ=18)
attattGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGcc < 1:2569708/93‑1 (MQ=18)
attGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTAc > 1:1282389/1‑93 (MQ=18)
attGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTAc < 1:6088838/93‑1 (MQ=18)
tGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGa > 1:6359105/1‑93 (MQ=17)
gCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGAc < 1:2722475/93‑1 (MQ=17)
ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACtt < 1:6079808/93‑1 (MQ=18)
ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACtt > 2:2529996/1‑93 (MQ=17)
tGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCCAGTCGCGTCTTATCAGGCCTACGACTTtct > 2:2683782/1‑93 (MQ=18)
gTAGGCGTGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTtctc < 2:3939584/93‑1 (MQ=17)
gTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTtctc < 2:3234392/93‑1 (MQ=18)
gTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTtctc > 1:2159995/1‑93 (MQ=18)
aGGCCGGATAAGGCGTTTACGACGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCg > 2:2200634/1‑93 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGc > 2:3565448/1‑93 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCCACGACTTTCTCCGc > 2:5360298/1‑93 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCa > 1:4715422/1‑93 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCa > 1:4668012/1‑93 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCa > 1:423925/1‑93 (MQ=18)
cGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATc < 1:5405882/93‑1 (MQ=18)
cGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATc < 2:1689677/93‑1 (MQ=18)
cGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATc > 1:1180871/1‑93 (MQ=18)
ggATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATcc < 2:6637587/93‑1 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg > 2:2315576/1‑93 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg < 1:4030909/93‑1 (MQ=18)
aTAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCgg < 2:6228478/93‑1 (MQ=18)
aaGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCa > 2:758233/1‑93 (MQ=21)
aGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGGTGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAt > 1:6564862/1‑93 (MQ=21)
aGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAt > 2:2431747/1‑93 (MQ=21)
aGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAt > 2:5653043/1‑93 (MQ=21)
aGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCCGCAt > 1:1144404/1‑93 (MQ=18)
ggCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATa > 1:4332267/1‑93 (MQ=21)
gTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaac < 1:782983/93‑1 (MQ=21)
tttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaaca > 1:2370240/1‑93 (MQ=25)
ttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaacaa < 2:1270514/93‑1 (MQ=21)
ttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaacaa < 2:1937927/93‑1 (MQ=21)
ttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCCACGACTTTCTCCGCATCCGGCATAaacaa < 1:1640389/93‑1 (MQ=21)
tACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaacaac < 2:4751443/93‑1 (MQ=25)
tACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaacaac < 1:102593/93‑1 (MQ=25)
acgacgCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACg > 2:5368230/1‑93 (MQ=25)
aCGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACg < 1:5189774/93‑1 (MQ=25)
cgccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGa < 2:4391681/93‑1 (MQ=25)
gccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAg < 2:1551081/93‑1 (MQ=25)
ccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGc < 2:3880621/93‑1 (MQ=25)
cATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTc > 2:2956228/1‑93 (MQ=37)
aTCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCa > 1:918695/1‑93 (MQ=37)
tCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAg < 2:4528974/93‑1 (MQ=37)
tCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAg > 2:4139396/1‑93 (MQ=37)
caggcATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGc < 1:6380798/89‑1 (MQ=37)
aggcATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGTCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCt > 2:5220187/4‑93 (MQ=38)
aggcATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCt > 1:5922313/4‑93 (MQ=255)
ggcATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTa > 2:3343220/3‑93 (MQ=255)
gcATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCGTCAGCTaa < 1:6473205/92‑1 (MQ=37)
cATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTaaa > 1:2704081/1‑93 (MQ=255)
cATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTaaa < 1:5886807/93‑1 (MQ=255)
aTCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAc < 2:6095352/93‑1 (MQ=255)
tGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGc > 1:1339646/1‑93 (MQ=255)
aGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGccc < 2:1307513/93‑1 (MQ=255)
aGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGccc < 1:385719/93‑1 (MQ=255)
aGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGccc > 1:4417340/1‑93 (MQ=255)
gCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCa > 1:3707874/1‑93 (MQ=255)
cATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCaa < 2:4675118/93‑1 (MQ=255)
atgatgCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAAt > 1:6239710/1‑93 (MQ=255)
atgatgCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAAt > 1:5583650/1‑93 (MQ=255)
atgatgCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAAt > 2:5506964/1‑93 (MQ=255)
atgCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCAt < 2:2635622/93‑1 (MQ=255)
tgCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCAtt < 1:1912976/93‑1 (MQ=255)
tgCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCAtt > 1:3017360/1‑93 (MQ=255)
gCCTGATGCGGCAC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTg > 1:4985980/1‑93 (MQ=255)
gCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTg > 2:1759274/1‑93 (MQ=255)
gCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTg > 1:6152184/1‑93 (MQ=255)
cTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCg > 2:1991517/1‑93 (MQ=255)
cTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCg > 1:5137228/1‑93 (MQ=255)
tGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGAgg > 2:831359/1‑93 (MQ=255)
gATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGc > 2:4204343/1‑93 (MQ=255)
aTGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGca > 1:5790310/1‑93 (MQ=255)
aTGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGca > 2:6582444/1‑93 (MQ=255)
aTGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGca > 2:5084340/1‑93 (MQ=255)
aTGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGca < 2:4248882/93‑1 (MQ=255)
gcggc‑gcTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGcaca < 2:3461193/93‑1 (MQ=255)
|
TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGC‑G‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACA > NC_000913/4051077‑4051256
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGC‑G‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACACAGCACG > NC_000913/4051077‑4051263
|
TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑G‑C > SRR4302547.1175878/1‑94 (MQ=60)
TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑G‑C < SRR4302547.5731240/94‑1 (MQ=60)
TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑G‑C < SRR4302547.5132776/94‑1 (MQ=60)
GGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑Gct < SRR4302547.4071657/94‑3 (MQ=60)
GGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑Gct > SRR4302547.2496136/1‑92 (MQ=60)
GGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑Gctg < SRR4302547.1375483/94‑4 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGT > SRR4302547.4076799/1‑94 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGT > SRR4302547.1745765/1‑94 (MQ=60)
AACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTC > SRR4302547.1977244/1‑94 (MQ=60)
ACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCG < SRR4302547.9057/94‑1 (MQ=60)
CAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGC > SRR4302547.3800136/1‑94 (MQ=60)
AAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCG > SRR4302547.5122377/1‑94 (MQ=60)
AAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCG > SRR4302547.2297873/1‑94 (MQ=60)
AAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGT > SRR4302547.132765/1‑94 (MQ=60)
AAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGT < SRR4302547.2256416/94‑1 (MQ=60)
ACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCT < SRR4302547.6169366/94‑1 (MQ=60)
ACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCT < SRR4302547.4651061/94‑1 (MQ=60)
ACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCT < SRR4302547.5841358/94‑1 (MQ=60)
ACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGACTGATGCGGC‑GCTGGTCGCGTCT > SRR4302547.6501979/1‑94 (MQ=60)
CCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTT > SRR4302547.6211277/1‑94 (MQ=60)
CCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTT < SRR4302547.3617002/94‑1 (MQ=60)
CTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTA > SRR4302547.5136441/1‑94 (MQ=60)
CTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTA > SRR4302547.3404351/1‑94 (MQ=60)
CTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTA > SRR4302547.1417184/1‑94 (MQ=60)
CTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTA > SRR4302547.5321061/1‑94 (MQ=60)
TGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTAT < SRR4302547.2219496/94‑1 (MQ=60)
TGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTAT > SRR4302547.867749/1‑94 (MQ=60)
AAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGC > SRR4302547.2773140/1‑94 (MQ=60)
AATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCC < SRR4302547.5543364/94‑1 (MQ=60)
ATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCT < SRR4302547.2621604/94‑1 (MQ=60)
TATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGGTGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTAC < SRR4302547.6225832/94‑1 (MQ=60)
TATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTAC > SRR4302547.1308229/1‑94 (MQ=60)
TATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTAC > SRR4302547.804472/1‑94 (MQ=60)
TATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTAC > SRR4302547.5853142/1‑94 (MQ=60)
ATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACG < SRR4302547.4263203/94‑1 (MQ=60)
ATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACG < SRR4302547.6215144/94‑1 (MQ=60)
TTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGA > SRR4302547.6491733/1‑94 (MQ=60)
TGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGAC > SRR4302547.4499665/1‑94 (MQ=60)
GCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACT > SRR4302547.5264080/1‑94 (MQ=60)
GCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACT < SRR4302547.2777145/94‑1 (MQ=60)
GCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACT > SRR4302547.1662231/1‑94 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTT > SRR4302547.1447187/1‑94 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTT > SRR4302547.4382989/1‑94 (MQ=60)
TTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTT < SRR4302547.6205920/94‑1 (MQ=60)
TTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTC < SRR4302547.689348/94‑1 (MQ=60)
TGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTC > SRR4302547.2203166/1‑94 (MQ=60)
TAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCG > SRR4302547.5641318/1‑94 (MQ=60)
AGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGC > SRR4302547.3811518/1‑94 (MQ=60)
AGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGC > SRR4302547.6758662/1‑94 (MQ=60)
GGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCA > SRR4302547.4813043/1‑94 (MQ=60)
GGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCA > SRR4302547.4764682/1‑94 (MQ=60)
GGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCA > SRR4302547.431784/1‑94 (MQ=60)
GCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCAT < SRR4302547.5003051/94‑1 (MQ=60)
CCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATC > SRR4302547.1204724/1‑94 (MQ=60)
CGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCC < SRR4302547.5517639/94‑1 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302547.1287547/1‑94 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG < SRR4302547.6289729/94‑1 (MQ=60)
GATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGG < SRR4302547.4320918/94‑1 (MQ=60)
GATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGG < SRR4302547.4112781/94‑1 (MQ=60)
ATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGC > SRR4302547.5981710/1‑94 (MQ=60)
TAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCA > SRR4302547.5221956/1‑94 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGGTGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT > SRR4302547.6701552/1‑94 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT > SRR4302547.2656632/1‑94 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCCGCAT > SRR4302547.1167532/1‑94 (MQ=60)
AGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATA > SRR4302547.4421396/1‑94 (MQ=60)
CGTTTACGCCGCATCA‑GTCATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAAC < SRR4302547.2315580/94‑1 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA < SRR4302547.797786/94‑1 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA > SRR4302547.2418284/1‑94 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA < SRR4302547.2257529/94‑1 (MQ=60)
TTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAA > SRR4302547.6132468/1‑94 (MQ=60)
TTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCCACGACTTTCTCCGCATCCGGCATAAACAAC < SRR4302547.1672810/94‑1 (MQ=60)
TACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACG < SRR4302547.104473/94‑1 (MQ=60)
TACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACG < SRR4302547.243214/94‑1 (MQ=60)
TACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACG > SRR4302547.2718707/1‑94 (MQ=60)
ACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGA < SRR4302547.5296582/94‑1 (MQ=60)
GCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGC > SRR4302547.1249792/1‑94 (MQ=60)
CGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTT > SRR4302547.3633217/1‑94 (MQ=60)
CGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTT > SRR4302547.112260/1‑94 (MQ=60)
GCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTC > SRR4302547.6043159/1‑94 (MQ=60)
GCATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTC > SRR4302547.2582878/1‑94 (MQ=60)
CATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCA > SRR4302547.936425/1‑94 (MQ=60)
CATCAGG‑CACCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCA > SRR4302547.6603330/1‑94 (MQ=60)
ATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG > SRR4302547.6522500/1‑94 (MQ=60)
ATCAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG < SRR4302547.4089583/94‑1 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT > SRR4302547.6045060/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT > SRR4302547.6464072/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT < SRR4302547.6513954/94‑1 (MQ=60)
GGCATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAA > SRR4302547.4735435/1‑94 (MQ=60)
GCATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA > SRR4302547.2758345/1‑94 (MQ=60)
GCATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA > SRR4302547.1736870/1‑94 (MQ=60)
GCATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA < SRR4302547.2893923/94‑1 (MQ=60)
GCATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCGTCAGCTAAA < SRR4302547.6607990/94‑1 (MQ=60)
CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAC > SRR4302547.4598038/1‑94 (MQ=60)
CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAC < SRR4302547.6008686/94‑1 (MQ=60)
CATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGATAAAC > SRR4302547.954482/1‑94 (MQ=60)
ATCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACA < SRR4302547.627465/94‑1 (MQ=60)
TCTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAG > SRR4302547.4956345/1‑94 (MQ=60)
CTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGC < SRR4302547.2255026/94‑1 (MQ=60)
CTGAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGC > SRR4302547.1366563/1‑94 (MQ=60)
GAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCC > SRR4302547.2306175/1‑94 (MQ=60)
GAGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCC > SRR4302547.4508501/1‑94 (MQ=60)
AGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCA < SRR4302547.392866/94‑1 (MQ=60)
AGCATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCA > SRR4302547.3783566/1‑94 (MQ=60)
CATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAAT > SRR4302547.6369338/1‑94 (MQ=60)
CATGATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAAT > SRR4302547.5698818/1‑94 (MQ=60)
ATGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATT > SRR4302547.3077359/1‑94 (MQ=60)
TGCCTGATGCGGCAC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTG > SRR4302547.5089072/1‑94 (MQ=60)
TGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTG > SRR4302547.6279832/1‑94 (MQ=60)
TGCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTG < SRR4302547.1950829/94‑1 (MQ=60)
GCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGC < SRR4302547.4049512/94‑1 (MQ=60)
GCCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGC > SRR4302547.3348696/1‑94 (MQ=60)
CCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCG > SRR4302547.4612831/1‑94 (MQ=60)
CCTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCG > SRR4302547.5243063/1‑94 (MQ=60)
CCTGATGCGGA‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCG < SRR4302547.6679399/94‑1 (MQ=60)
CTGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGG < SRR4302547.4774555/94‑1 (MQ=60)
TGATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGC > SRR4302547.5917778/1‑94 (MQ=60)
GATGCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCA > SRR4302547.5910082/1‑94 (MQ=60)
GCGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACAC > SRR4302547.6555368/1‑94 (MQ=60)
CGGC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACACA < SRR4302547.2526615/94‑1 (MQ=60)
GC‑GCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACACAGC < SRR4302547.809102/94‑1 (MQ=60)
C‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACACAGCACG > SRR4302547.3513006/1‑94 (MQ=60)
C‑TGGTCGCGTCTAATCAGGCCTACGACTTTCTCCCCATCCGGCATAAACAACGAGCTTCAGCTAAACCGCCCACTCATTGCCGCACACAacccg > SRR4302547.683975/1‑89 (MQ=60)
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TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGC‑G‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACACAGCACG > NC_000913/4051077‑4051263
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
