Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,196,394 |
A→G |
Q11Q (CAA→CAG) |
nfi → |
endonuclease V |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,196,394 | 0 | A | G | 88.8%
| 807.1
/ 78.0
| 278 | Q11Q (CAA→CAG) | nfi | endonuclease V |
| Reads supporting (aligned to +/- strand): ref base A (19/12); new base G (126/121); total (145/133) |
| Fisher's exact test for biased strand distribution p-value = 3.42e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.96e-01 |
Only 100 of 287 total aligned reads displayed.
TGCTGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGA > NC_000913/4196304‑4196483
|
tGCTGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTcagca > 2:3763039/1‑93 (MQ=255)
gCTGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTcagcaa > 1:5503146/1‑93 (MQ=255)
tGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAAt < 1:3066963/93‑1 (MQ=255)
tGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAAt > 1:2359039/1‑93 (MQ=255)
tGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAAt < 1:1104312/93‑1 (MQ=255)
ggCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATc > 2:2575571/1‑93 (MQ=255)
ggCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATc < 1:5121872/93‑1 (MQ=255)
gCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCg > 2:706082/1‑93 (MQ=255)
tgtTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAAc > 2:6538306/1‑93 (MQ=255)
gtTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACt < 2:5258549/93‑1 (MQ=255)
gtTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACt > 2:5695839/1‑93 (MQ=255)
ttCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTg > 1:4077881/1‑93 (MQ=255)
cGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGc < 1:3770500/93‑1 (MQ=255)
gTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGct > 1:2189507/1‑93 (MQ=255)
gTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGct < 1:2533084/93‑1 (MQ=255)
tGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGctt < 2:4946294/93‑1 (MQ=255)
gAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGcttct > 1:1517430/1‑93 (MQ=255)
gAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGcttct > 1:3868070/1‑93 (MQ=255)
gAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGcttct > 1:91805/1‑93 (MQ=255)
aGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGcttctt < 2:14498/93‑1 (MQ=255)
aGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGcttctt > 2:2159787/1‑93 (MQ=255)
ggCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCttcttc < 1:6022403/93‑1 (MQ=255)
ggCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCttcttc < 2:3351827/93‑1 (MQ=255)
ggCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCttcttc < 1:1047135/93‑1 (MQ=255)
ggCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCttcttc > 1:4243885/1‑93 (MQ=255)
aGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCtgt < 2:1200186/93‑1 (MQ=255)
gTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCtgtg < 2:632183/93‑1 (MQ=255)
tGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCGGCAAATCGAACTGGCTTCTTCTGTGa < 2:5514557/93‑1 (MQ=255)
gCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGAt > 1:6263970/1‑93 (MQ=255)
cATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATc < 1:3335818/93‑1 (MQ=255)
cATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATc > 1:2263645/1‑93 (MQ=255)
cATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATc < 2:2985980/93‑1 (MQ=255)
cATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATc < 2:3849445/93‑1 (MQ=255)
tCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCcg > 2:594018/1‑93 (MQ=255)
tCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCcg < 2:2953194/93‑1 (MQ=255)
cGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCcgc < 2:2729093/93‑1 (MQ=255)
gACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCcgcg > 2:1935818/1‑93 (MQ=255)
aCTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGa > 2:4431546/1‑93 (MQ=255)
aCTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGa > 1:3009636/1‑93 (MQ=255)
cTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAg < 1:1244893/93‑1 (MQ=255)
tGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTNGCTTCTTCTGTGATCCGCGNgg > 2:4689036/1‑93 (MQ=255)
gTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGa > 2:2478161/1‑93 (MQ=255)
gTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGa > 2:2877128/1‑93 (MQ=255)
tCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGAt < 1:2597326/93‑1 (MQ=255)
tCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGAt < 1:762282/93‑1 (MQ=255)
tGAACAGTCTCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCg > 1:6467249/1‑93 (MQ=255)
aaCAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGAc < 2:17830/93‑1 (MQ=255)
aCAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACt < 2:47612/93‑1 (MQ=255)
cAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTc < 2:3949283/93‑1 (MQ=255)
cAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTc < 2:1389042/93‑1 (MQ=255)
gTATCACCGCTAAGGAGTGATTATGGATCTCTCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGGTCGCCTCGa > 2:4511785/1‑93 (MQ=255)
aTCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATa > 2:3462830/1‑93 (MQ=255)
aTCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATa > 1:1448936/1‑93 (MQ=255)
tCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATaa > 2:3639614/1‑93 (MQ=255)
cACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATaaa < 2:4846829/93‑1 (MQ=255)
cACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATaaa > 2:4979787/1‑93 (MQ=255)
cACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATaaa < 2:419563/93‑1 (MQ=255)
ccGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGa > 1:5195576/1‑93 (MQ=255)
cGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGAt > 1:3414414/1‑93 (MQ=255)
cGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGAt < 2:978715/93‑1 (MQ=255)
gCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATc < 1:1765668/93‑1 (MQ=255)
gCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATc < 1:843049/93‑1 (MQ=255)
cTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATcc > 2:4784605/1‑93 (MQ=255)
cTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATcc < 2:3248808/93‑1 (MQ=255)
aaGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCAc > 1:3564800/1‑93 (MQ=255)
aGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCAcc > 1:3688091/1‑93 (MQ=255)
ggAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCg < 2:3069674/93‑1 (MQ=255)
gAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCgg < 2:5167485/93‑1 (MQ=255)
ttaTTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATc < 1:4947586/91‑1 (MQ=255)
gATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCCCCGGATCt < 1:669270/93‑1 (MQ=255)
ttATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGa > 2:6636604/1‑93 (MQ=255)
tacggATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGAt < 1:4635788/90‑1 (MQ=255)
tATGGATTTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGAt < 1:2396793/93‑1 (MQ=255)
tATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGAt < 2:3581135/93‑1 (MQ=255)
tATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGAt < 1:4557073/93‑1 (MQ=255)
tATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTGCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGAt > 1:5363603/1‑93 (MQ=255)
aTCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCg < 1:5395541/93‑1 (MQ=255)
tctcGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCgg > 1:273807/1‑93 (MQ=255)
ctcGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGa < 2:5817146/93‑1 (MQ=255)
ctcGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGa < 1:1931028/93‑1 (MQ=255)
tcGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAg < 1:6184455/93‑1 (MQ=255)
tcGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAg < 2:1589122/93‑1 (MQ=255)
tcGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAg > 2:2351536/1‑93 (MQ=255)
cgcgTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGc > 2:60748/1‑93 (MQ=255)
gcgTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGcc < 1:2023963/93‑1 (MQ=255)
gcgTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGcc < 2:5137351/93‑1 (MQ=255)
cgTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCg < 2:225573/93‑1 (MQ=255)
gTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGa < 1:187590/93‑1 (MQ=255)
tCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGAt < 1:2503300/93‑1 (MQ=255)
tCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGAt > 1:5726185/1‑93 (MQ=255)
tCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGAt > 2:3309742/1‑93 (MQ=255)
cATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATg > 1:3728526/1‑93 (MQ=255)
ttACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTc > 1:4158471/1‑93 (MQ=255)
ttACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTc > 1:1159566/1‑93 (MQ=255)
cgcgCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAGAGATCTACCGGATCTGATCGCCGGAGCCGATGTCggg > 1:2899789/1‑93 (MQ=255)
gcgcTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGt > 1:6585447/1‑93 (MQ=255)
cTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTg > 1:1883558/1‑93 (MQ=255)
cTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTg > 2:2223133/1‑93 (MQ=255)
tCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGa > 2:6457311/1‑93 (MQ=255)
tCAACAAATCGAACTGGCTTCTTCTGTTATCCGCGAGGATCGACTCGATAAAGATCCACCGGTTCTGATCGCCGGAGCCGATGTCGGGTTTGa < 1:4404328/93‑1 (MQ=255)
|
TGCTGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGA > NC_000913/4196304‑4196483
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACATGCTGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCA > NC_000913/4196301‑4196486
|
ACATGCTGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAG < SRR4302547.86730/94‑1 (MQ=60)
ACATGCTGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAG < SRR4302547.1976833/94‑1 (MQ=60)
ATGCTGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCA < SRR4302547.4245565/94‑1 (MQ=60)
TGCTGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAA > SRR4302547.5616769/1‑94 (MQ=60)
CTGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAAT > SRR4302547.2406843/1‑94 (MQ=60)
TGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATC < SRR4302547.3127927/94‑1 (MQ=60)
TGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATC < SRR4302547.1126522/94‑1 (MQ=60)
GGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCG < SRR4302547.5227408/94‑1 (MQ=60)
GGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCG < SRR4302547.5184559/94‑1 (MQ=60)
GGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCG > SRR4302547.4309766/1‑94 (MQ=60)
CGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAA > SRR4302547.5382730/1‑94 (MQ=60)
GTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTG > SRR4302547.4160738/1‑94 (MQ=60)
TTCGTGGACGCAGTGCATCGACTGTCCGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGG < SRR4302547.2138759/94‑1 (MQ=60)
TCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGC < SRR4302547.1814993/94‑1 (MQ=60)
CGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCT < SRR4302547.1952884/94‑1 (MQ=60)
CGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCT > SRR4302547.2233440/1‑94 (MQ=60)
CGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCT < SRR4302547.3847387/94‑1 (MQ=60)
GTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTT < SRR4302547.2584285/94‑1 (MQ=60)
GTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTT > SRR4302547.414923/1‑94 (MQ=60)
GTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTT < SRR4302547.81855/94‑1 (MQ=60)
GTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTT < SRR4302547.3831956/94‑1 (MQ=60)
TGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTC > SRR4302547.4678376/1‑94 (MQ=60)
TGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTC > SRR4302547.2030143/1‑94 (MQ=60)
GGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCT > SRR4302547.3946822/1‑94 (MQ=60)
GGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCT > SRR4302547.3452612/1‑94 (MQ=60)
GGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCT > SRR4302547.1547657/1‑94 (MQ=60)
GGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCT > SRR4302547.4336165/1‑94 (MQ=60)
GGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCT < SRR4302547.681519/94‑1 (MQ=60)
GGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCT > SRR4302547.2261287/1‑94 (MQ=60)
GGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCT > SRR4302547.93511/1‑94 (MQ=60)
GAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTT < SRR4302547.3337386/94‑1 (MQ=60)
GAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTT > SRR4302547.3799466/1‑94 (MQ=60)
GAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTT < SRR4302547.4767577/94‑1 (MQ=60)
AGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTC < SRR4302547.6055560/94‑1 (MQ=60)
AGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTC > SRR4302547.4330675/1‑94 (MQ=60)
GGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCT > SRR4302547.1134410/1‑94 (MQ=60)
GGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCT < SRR4302547.1067845/94‑1 (MQ=60)
GGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCT < SRR4302547.6147391/94‑1 (MQ=60)
GGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCT < SRR4302547.3883420/94‑1 (MQ=60)
CAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGT < SRR4302547.2418760/94‑1 (MQ=60)
CAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGT > SRR4302547.3571609/1‑94 (MQ=60)
AGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTG > SRR4302547.2791388/1‑94 (MQ=60)
TGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGAT > SRR4302547.6394093/1‑94 (MQ=60)
GCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATC > SRR4302547.2309395/1‑94 (MQ=60)
CATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCC < SRR4302547.3403299/94‑1 (MQ=60)
CATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCC > SRR4302547.3010359/1‑94 (MQ=60)
CATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCC < SRR4302547.2331259/94‑1 (MQ=60)
ATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCG < SRR4302547.2516521/94‑1 (MQ=60)
ATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCG < SRR4302547.1703996/94‑1 (MQ=60)
ATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCG > SRR4302547.2838319/1‑94 (MQ=60)
CGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCG < SRR4302547.366133/94‑1 (MQ=60)
GACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGA > SRR4302547.3069480/1‑94 (MQ=60)
GACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGA < SRR4302547.4013825/94‑1 (MQ=60)
ACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAG < SRR4302547.4573405/94‑1 (MQ=60)
ACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAG > SRR4302547.260673/1‑94 (MQ=60)
CTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGG < SRR4302547.1270019/94‑1 (MQ=60)
CTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGG < SRR4302547.5227735/94‑1 (MQ=60)
TGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGA > SRR4302547.3070852/1‑94 (MQ=60)
TCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATC < SRR4302547.2649690/94‑1 (MQ=60)
TCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATC < SRR4302547.776657/94‑1 (MQ=60)
TCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATC < SRR4302547.255388/94‑1 (MQ=60)
CTGAACAGTCTCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCG > SRR4302547.6601920/1‑94 (MQ=60)
TGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGC > SRR4302547.1493932/1‑94 (MQ=60)
TGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGA < SRR4302547.1071830/94‑1 (MQ=60)
TGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGA < SRR4302547.2407314/94‑1 (MQ=60)
GAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGAC < SRR4302547.935049/94‑1 (MQ=60)
AACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACT < SRR4302547.1208549/94‑1 (MQ=60)
ACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTC < SRR4302547.1923832/94‑1 (MQ=60)
ACAGTATCACCGCTAAGGAGTGAGTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTC < SRR4302547.2285215/94‑1 (MQ=60)
AGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGA < SRR4302547.2359287/94‑1 (MQ=60)
AGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGA > SRR4302547.4660510/1‑94 (MQ=60)
GTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGAT < SRR4302547.6071662/94‑1 (MQ=60)
TATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATA > SRR4302547.1477906/1‑94 (MQ=60)
TATCACCGCTAAGGAGTGACTATGGATCTCGCGTCAGTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATA < SRR4302547.66033/94‑1 (MQ=60)
TCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAA < SRR4302547.112518/94‑1 (MQ=60)
TCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAA < SRR4302547.5727311/94‑1 (MQ=60)
TCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAA < SRR4302547.4394236/94‑1 (MQ=60)
CACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAG > SRR4302547.1187853/1‑94 (MQ=60)
CACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAG > SRR4302547.2026022/1‑94 (MQ=60)
ACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGA > SRR4302547.5302502/1‑94 (MQ=60)
ACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGA > SRR4302547.579189/1‑94 (MQ=60)
CCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGAT > SRR4302547.303018/1‑94 (MQ=60)
CCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGAT > SRR4302547.5519050/1‑94 (MQ=60)
CCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGAT > SRR4302547.3483940/1‑94 (MQ=60)
CGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATA > SRR4302547.5526594/1‑94 (MQ=60)
GCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCC < SRR4302547.1800691/94‑1 (MQ=60)
GCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCC < SRR4302547.1388992/94‑1 (MQ=60)
GCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCC < SRR4302547.859143/94‑1 (MQ=60)
CTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCA > SRR4302547.745385/1‑94 (MQ=60)
CTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCA > SRR4302547.3442767/1‑94 (MQ=60)
CTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCA > SRR4302547.3718587/1‑94 (MQ=60)
TAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCAC > SRR4302547.1537773/1‑94 (MQ=60)
TAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCAC > SRR4302547.3637544/1‑94 (MQ=60)
AAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACC > SRR4302547.6211437/1‑94 (MQ=60)
AAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACC < SRR4302547.5287585/94‑1 (MQ=60)
AAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACC > SRR4302547.3763380/1‑94 (MQ=60)
AAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACC < SRR4302547.6693699/94‑1 (MQ=60)
AGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCG > SRR4302547.6599035/1‑94 (MQ=60)
AGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGAT > SRR4302547.6383037/1‑94 (MQ=60)
AGTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGAT > SRR4302547.1838407/1‑94 (MQ=60)
GTGATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATC > SRR4302547.2680899/1‑94 (MQ=60)
TTATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCT < SRR4302547.5050045/94‑1 (MQ=60)
GATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCCCCGGATCTG < SRR4302547.681587/94‑1 (MQ=60)
GATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTG < SRR4302547.415427/94‑1 (MQ=60)
GATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTG > SRR4302547.3873882/1‑94 (MQ=60)
ATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGA > SRR4302547.3130694/1‑94 (MQ=60)
ATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGA < SRR4302547.1784552/94‑1 (MQ=60)
ATTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGA < SRR4302547.3813036/94‑1 (MQ=60)
TTATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTGCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGAT > SRR4302547.5474239/1‑94 (MQ=60)
TATGGATTTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATC < SRR4302547.2445346/94‑1 (MQ=60)
TATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATC < SRR4302547.4651351/94‑1 (MQ=60)
TACGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATC < SRR4302547.4731810/94‑1 (MQ=60)
ATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCG > SRR4302547.3788096/1‑94 (MQ=60)
ATGGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTAGATAAAGATCCCCCCGATCTGCTCG > SRR4302547.4618503/1‑94 (MQ=60)
GTATCTCGCGTCATTACGCGCTCAGCAAATCGAGCTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCC < SRR4302547.2091804/94‑1 (MQ=60)
GGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCC > SRR4302547.5430586/1‑94 (MQ=60)
GGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCC > SRR4302547.416467/1‑94 (MQ=60)
GGATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCC < SRR4302547.6314450/94‑1 (MQ=60)
GATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCG > SRR4302547.1342391/1‑94 (MQ=60)
GATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCG > SRR4302547.5014703/1‑94 (MQ=60)
ATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGG < SRR4302547.5507007/94‑1 (MQ=60)
ATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGG < SRR4302547.696951/94‑1 (MQ=60)
ATCTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGG > SRR4302547.278925/1‑94 (MQ=60)
CTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAG < SRR4302547.1969310/94‑1 (MQ=60)
CTCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAG > SRR4302547.3119063/1‑94 (MQ=60)
TCGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGC < SRR4302547.6312816/94‑1 (MQ=60)
CGCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCC > SRR4302547.657699/1‑94 (MQ=60)
GCGTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCG < SRR4302547.2064270/94‑1 (MQ=60)
GCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCG > SRR4302547.932050/1‑94 (MQ=60)
CGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGA > SRR4302547.1915076/1‑94 (MQ=60)
GTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGAT < SRR4302547.6307874/94‑1 (MQ=60)
GTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGAT < SRR4302547.191125/94‑1 (MQ=60)
GTCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGAT > SRR4302547.5844477/1‑94 (MQ=60)
TCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATG > SRR4302547.5480474/1‑94 (MQ=60)
TCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATG > SRR4302547.3804645/1‑94 (MQ=60)
TCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATG < SRR4302547.2553887/94‑1 (MQ=60)
TCATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATG > SRR4302547.2644126/1‑94 (MQ=60)
CATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGT > SRR4302547.2846154/1‑94 (MQ=60)
ATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTC > SRR4302547.4243195/1‑94 (MQ=60)
ATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTC < SRR4302547.822222/94‑1 (MQ=60)
ATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTC > SRR4302547.1183019/1‑94 (MQ=60)
ATTACGCGCTCAGCAAATCGAACTGGCTTCTTCTGGGATACGCGAGGATCGACTCGATAAAGCTCCACAGGATCTGATCGCCGcagacacagcc > SRR4302547.4371544/1‑83 (MQ=60)
TACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGG < SRR4302547.570083/94‑1 (MQ=60)
ACGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAGAGATCTACCGGATCTGATCGCCGGAGCCGATGTCGGG > SRR4302547.2957616/1‑94 (MQ=60)
ACGCACTCAGCAAATCGAACTGGCTTCTTCTTTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGG < SRR4302547.3374903/94‑1 (MQ=60)
CGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGT > SRR4302547.6722564/1‑94 (MQ=60)
CGCGCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGT < SRR4302547.6666255/94‑1 (MQ=60)
CGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGT < SRR4302547.5114549/94‑1 (MQ=60)
GCTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTG > SRR4302547.1920762/1‑94 (MQ=60)
ACTCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTG < SRR4302547.2468645/94‑1 (MQ=60)
TCAGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAG > SRR4302547.6461181/1‑94 (MQ=60)
TCAACAAATCGAACTGGCTTCTTCTGTTATCCGCGAGGATCGACTCGATAAAGATCCACCGGTTCTGATCGCCGGAGCCGATGTCGGGTTTGAG < SRR4302547.4495049/94‑1 (MQ=60)
AGCAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTtggcg > SRR4302547.197810/1‑89 (MQ=60)
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ACATGCTGGCGTGTTCGTGGAGGCAGTGCATCGACTGTCTGAACAGTATCACCGCTAAGGAGTGATTATGGATCTCGCGTCATTACGCGCTCAACAAATCGAACTGGCTTCTTCTGTGATCCGCGAGGATCGACTCGATAAAGATCCACCGGATCTGATCGCCGGAGCCGATGTCGGGTTTGAGCA > NC_000913/4196301‑4196486
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
