Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,311,496 |
+C |
coding (301/408 nt) |
phnQ ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,311,495 | 1 | . | C | 99.3%
| 1024.0
/ ‑1.2
| 279 | coding (302/408 nt) | phnQ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base C (150/127); total (150/129) |
| Fisher's exact test for biased strand distribution p-value = 2.13e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 304 total aligned reads displayed.
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > NC_000913/4311403‑4311582
|
aGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑c < 1:2719260/93‑1 (MQ=255)
gATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTcc > 2:488312/1‑93 (MQ=255)
aTTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCg > 2:1615805/1‑93 (MQ=255)
tAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGc > 1:4270473/1‑93 (MQ=255)
tAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGc > 2:567112/1‑93 (MQ=255)
gtgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAg > 2:5354168/1‑93 (MQ=255)
tgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAgg > 1:5790403/1‑93 (MQ=255)
ggATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGc < 1:1036451/93‑1 (MQ=255)
gATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGcc < 1:6233339/93‑1 (MQ=255)
aTAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCg < 2:3039649/93‑1 (MQ=255)
tAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGa < 2:4763378/93‑1 (MQ=255)
agagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGat > 2:5893903/1‑93 (MQ=255)
gagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGata < 1:5268511/93‑1 (MQ=255)
gagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGata < 1:569656/93‑1 (MQ=255)
agTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGatat > 2:4160655/1‑93 (MQ=255)
tttCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGAtatta < 1:488312/93‑1 (MQ=255)
tttCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGAtatta < 2:1822317/93‑1 (MQ=255)
ttCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCGCCCTGCTCACGCTGTCA‑ACCGTTCCGGCCCAGGCCGAtattat > 1:6556237/1‑93 (MQ=255)
tttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATcga < 2:5772774/93‑1 (MQ=255)
ttttGAGGTTGGCTAATGAAACGCTTCCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATcgac < 1:5360005/93‑1 (MQ=255)
ttttGAGGTTGCCTAATGAACCGCTTCCCGCTATTTCTTTTATTCCCCCTGCTCCCGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATcgac < 1:3475916/93‑1 (MQ=255)
ttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATcgacga < 2:1085850/93‑1 (MQ=255)
aGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGacac < 1:3903098/93‑1 (MQ=255)
ggTTGTCTAAGGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACAcc < 1:258352/93‑1 (MQ=255)
ggTTGGCTAATGAAACGCTTTCCGCTCTTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTACGGCACAGGCCGATATTATCGACGACAcc > 2:2253380/1‑93 (MQ=255)
ttGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAt > 1:28992/1‑93 (MQ=255)
tGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAtt < 2:5810917/93‑1 (MQ=255)
tGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAtt < 1:1813452/93‑1 (MQ=255)
ggCTAATGAAACGCTTTCCGCTATTTCTTTTATTCGCCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTg < 2:193170/93‑1 (MQ=255)
gCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTgg < 2:4377461/93‑1 (MQ=255)
aaTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTTGCaa > 2:6337392/1‑93 (MQ=255)
aaTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCaa > 1:1540784/1‑93 (MQ=255)
aaTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCaa > 1:1206669/1‑93 (MQ=255)
aaTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCaa > 2:4953703/1‑93 (MQ=255)
aaTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCaa < 2:2472050/93‑1 (MQ=255)
aaTGAAACGCTTTCCGCTATTGCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCaa < 2:4508750/93‑1 (MQ=255)
aTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAat > 1:3966587/1‑93 (MQ=255)
aTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAat > 1:6352036/1‑93 (MQ=255)
aTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAat > 1:4608365/1‑93 (MQ=255)
tGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAata < 1:82561/93‑1 (MQ=255)
tGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAata < 1:560109/93‑1 (MQ=255)
gAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAatat < 1:2974707/93‑1 (MQ=255)
gAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAatat < 1:2154121/93‑1 (MQ=255)
aaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTc > 2:6486993/1‑93 (MQ=255)
cGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCGTTGGCAATATTcag < 1:5053902/93‑1 (MQ=255)
cGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcag < 1:5955327/93‑1 (MQ=255)
cTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagca < 2:545741/93‑1 (MQ=255)
tttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagcag < 2:3503287/93‑1 (MQ=255)
ttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAgg > 1:2113694/1‑93 (MQ=255)
ttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAgg > 2:1729470/1‑93 (MQ=255)
ttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAgg < 1:3073260/93‑1 (MQ=255)
ccGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCg > 2:3910667/1‑93 (MQ=255)
ccGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCg < 1:2011708/93‑1 (MQ=255)
cGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGa > 1:1418637/1‑93 (MQ=255)
cGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGa > 2:2512482/1‑93 (MQ=255)
cGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGa < 2:4815266/93‑1 (MQ=255)
gCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAt > 1:2354253/1‑93 (MQ=255)
gCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAt < 2:1246152/93‑1 (MQ=255)
gCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAt > 2:4651821/1‑93 (MQ=255)
gCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAt < 1:3616490/93‑1 (MQ=255)
cTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGact < 1:4190319/93‑3 (MQ=255)
tATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTa > 1:6269508/1‑93 (MQ=255)
tttCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAAt > 1:5027207/1‑93 (MQ=255)
tCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACTACACCATTGGCAATATTCAGCAGGCGATTAATGa > 1:2191736/1‑93 (MQ=255)
tCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGa < 2:1340145/93‑1 (MQ=255)
ttttATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACg < 1:3551212/93‑1 (MQ=255)
ttttATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACg > 2:3552141/1‑93 (MQ=255)
tttATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGc > 2:6582205/1‑93 (MQ=255)
ttATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCt > 1:931511/1‑93 (MQ=255)
tATTCACCCTGCTCACGCTGTCCTC‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCtt < 2:2161211/93‑1 (MQ=255)
tATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCtt > 2:783197/1‑93 (MQ=255)
aTTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTta > 2:2943889/1‑93 (MQ=255)
aTTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGAAATATTCAGCAGGCGATTAATGACGCTta > 1:1005400/1‑93 (MQ=255)
ttCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtat > 2:3440872/1‑93 (MQ=255)
ttCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtat < 1:4416096/93‑1 (MQ=255)
ttCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACAACATTGGCAATATTCAGTATGCGCTTAATGACGCTtat > 1:34172/1‑93 (MQ=255)
cACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATaa > 1:2639377/1‑93 (MQ=255)
aCCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAc < 1:4126551/93‑1 (MQ=255)
aCCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAc > 2:406748/1‑93 (MQ=255)
aCCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAc > 2:3749397/1‑93 (MQ=255)
ccTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAccc < 1:1700448/93‑1 (MQ=255)
cTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCt < 2:4203795/93‑1 (MQ=255)
tGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTg > 1:4452872/1‑93 (MQ=255)
gCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGa > 1:254198/1‑93 (MQ=255)
gCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGa < 2:5047419/93‑1 (MQ=255)
cTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc < 2:1408223/93‑1 (MQ=255)
cTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc > 2:6000953/1‑93 (MQ=255)
cTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc > 1:1758124/1‑93 (MQ=255)
cTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc > 2:4298266/1‑93 (MQ=255)
ccccGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAcc < 2:2743611/90‑1 (MQ=255)
cACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCg > 2:277886/1‑93 (MQ=255)
aCGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGt < 1:3745329/93‑1 (MQ=255)
cGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTg > 1:1601676/1‑93 (MQ=255)
cGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTg > 2:5932572/1‑93 (MQ=255)
gCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTgg > 2:3279770/1‑93 (MQ=255)
cTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTggg < 1:6456926/93‑1 (MQ=255)
cTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTggg < 2:1154794/93‑1 (MQ=255)
cTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTggg > 1:4807363/1‑93 (MQ=255)
tGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGc > 2:3104642/1‑93 (MQ=255)
gTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCg > 1:1336053/1‑93 (MQ=255)
|
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > NC_000913/4311403‑4311582
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT > NC_000913/4311404‑4311589
|
AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CC > SRR4302547.2210160/1‑94 (MQ=60)
AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CC > SRR4302547.5151630/1‑94 (MQ=60)
AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CC < SRR4302547.2773859/94‑1 (MQ=60)
AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CC > SRR4302547.5939561/1‑94 (MQ=60)
TAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑Ccgt < SRR4302547.5277533/94‑4 (MQ=60)
AATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT < SRR4302547.2603562/94‑1 (MQ=60)
TGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCC > SRR4302547.2745986/1‑94 (MQ=60)
TGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCC > SRR4302547.41370/1‑94 (MQ=60)
GATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCG > SRR4302547.658640/1‑94 (MQ=60)
GATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCG < SRR4302547.2162481/94‑1 (MQ=60)
ATTAATTTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGG < SRR4302547.3569590/94‑1 (MQ=60)
ATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGG > SRR4302547.5469628/1‑94 (MQ=60)
TTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGC > SRR4302547.4358120/1‑94 (MQ=60)
TTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGC < SRR4302547.4242331/94‑1 (MQ=60)
TAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCC > SRR4302547.4034371/1‑94 (MQ=60)
TAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCC < SRR4302547.4321313/94‑1 (MQ=60)
TAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCC > SRR4302547.6397765/1‑94 (MQ=60)
AATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCC < SRR4302547.1391598/94‑1 (MQ=60)
ATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCA > SRR4302547.150041/1‑94 (MQ=60)
ATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCA < SRR4302547.4493840/94‑1 (MQ=60)
TGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAG < SRR4302547.989068/94‑1 (MQ=60)
GTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGG < SRR4302547.1266899/94‑1 (MQ=60)
GTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGG > SRR4302547.5910175/1‑94 (MQ=60)
GTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGG > SRR4302547.3613124/1‑94 (MQ=60)
GGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCC < SRR4302547.1056866/94‑1 (MQ=60)
GGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCC > SRR4302547.1602054/1‑94 (MQ=60)
GATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCG < SRR4302547.6362834/94‑1 (MQ=60)
GATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCG < SRR4302547.3087304/94‑1 (MQ=60)
GATAGAGTTTCTTTTTGAGGTTGCCTAATGAAACGCTTTCCACTATTTCTTTTACTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCG < SRR4302547.4949663/94‑1 (MQ=60)
ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGA > SRR4302547.1790885/1‑94 (MQ=60)
ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGA > SRR4302547.1161313/1‑94 (MQ=60)
ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGA > SRR4302547.3925437/1‑94 (MQ=60)
ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGA > SRR4302547.2214155/1‑94 (MQ=60)
TAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGAT > SRR4302547.2191731/1‑94 (MQ=60)
GAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATAT < SRR4302547.5377054/94‑1 (MQ=60)
GAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATAT < SRR4302547.579899/94‑1 (MQ=60)
AGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATT > SRR4302547.3890253/1‑94 (MQ=60)
TTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCGCCCTGCTCACGCTGT‑CAACCGTTCCGGCCCAGGCCGATATTAT > SRR4302547.6692756/1‑94 (MQ=60)
TTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTAT < SRR4302547.497244/94‑1 (MQ=60)
TCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCG > SRR4302547.4724896/1‑94 (MQ=60)
CTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGA > SRR4302547.1730172/1‑94 (MQ=60)
TTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGAC < SRR4302547.1711304/94‑1 (MQ=60)
TTTTGAGGTTGGCTAATGAAACGCTTCCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACG < SRR4302547.5470571/94‑1 (MQ=60)
TTTTGAGGTTGCCTAATGAACCGCTTCCCGCTATTTCTTTTATTCCCCCTGCTCCCGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACG < SRR4302547.3546817/94‑1 (MQ=60)
AGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACC < SRR4302547.3982470/94‑1 (MQ=60)
GGTTGTCTAAGGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCA < SRR4302547.263190/94‑1 (MQ=60)
GTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAT > SRR4302547.29517/1‑94 (MQ=60)
TTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATT < SRR4302547.5119085/94‑1 (MQ=60)
TTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATACTATCGACGACACCATT > SRR4302547.3679445/1‑94 (MQ=60)
TTGCCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCCC‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATT < SRR4302547.2584732/94‑1 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTG < SRR4302547.1849278/94‑1 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTG > SRR4302547.3155741/1‑94 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGCTCCGGCCCATGCCGATATTATCGACGACAACATTG > SRR4302547.6501739/1‑94 (MQ=60)
GGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGG < SRR4302547.1816121/94‑1 (MQ=60)
GCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGC < SRR4302547.1488915/94‑1 (MQ=60)
CTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCA < SRR4302547.1030804/94‑1 (MQ=60)
CTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATAGTATCGACGACACCATTGGCA < SRR4302547.6613250/94‑1 (MQ=60)
TAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAA > SRR4302547.1580700/1‑94 (MQ=60)
TAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAA > SRR4302547.1571455/1‑94 (MQ=60)
TAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAA > SRR4302547.1231022/1‑94 (MQ=60)
TAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAA > SRR4302547.3198899/1‑94 (MQ=60)
TAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAA > SRR4302547.447818/1‑94 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT > SRR4302547.6484410/1‑94 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT > SRR4302547.4047263/1‑94 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT > SRR4302547.4703739/1‑94 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT > SRR4302547.3740410/1‑94 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT < SRR4302547.1211503/94‑1 (MQ=60)
TGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAT < SRR4302547.570196/94‑1 (MQ=60)
TGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAT < SRR4302547.1328029/94‑1 (MQ=60)
TGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAT < SRR4302547.84094/94‑1 (MQ=60)
GAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATT < SRR4302547.4512035/94‑1 (MQ=60)
GAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATT < SRR4302547.2197138/94‑1 (MQ=60)
GAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATT < SRR4302547.3033903/94‑1 (MQ=60)
AAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTC > SRR4302547.825593/1‑94 (MQ=60)
AACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA < SRR4302547.6164317/94‑1 (MQ=60)
AACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA > SRR4302547.2389736/1‑94 (MQ=60)
AACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA > SRR4302547.5114465/1‑94 (MQ=60)
AACCCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGCCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA < SRR4302547.2237679/94‑1 (MQ=60)
CGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCGTTGGCAATATTCAGC < SRR4302547.5158238/94‑1 (MQ=60)
CGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGC < SRR4302547.6078823/94‑1 (MQ=60)
CGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGC > SRR4302547.3518605/1‑94 (MQ=60)
GCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCA > SRR4302547.5733501/1‑94 (MQ=60)
TTTCCGCTATTTCTTTTATTCACCCTGGTCACGCTGT‑CAACCGTTCCGGCCCGGCCCGATATTATCGGCGACACCATTGGCAATATTCGGCAGG < SRR4302547.2047203/94‑1 (MQ=60)
TTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGG > SRR4302547.2155806/1‑94 (MQ=60)
TTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGC < SRR4302547.3134313/94‑1 (MQ=60)
CCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGA > SRR4302547.5206494/1‑94 (MQ=60)
CCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGA > SRR4302547.1447034/1‑94 (MQ=60)
CCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGA < SRR4302547.2051737/94‑1 (MQ=60)
CCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGA < SRR4302547.5983286/94‑1 (MQ=60)
CGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAT > SRR4302547.2401959/1‑94 (MQ=60)
GCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATT < SRR4302547.3690271/94‑1 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA > SRR4302547.6465890/1‑94 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA < SRR4302547.2694051/94‑1 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA > SRR4302547.6399742/1‑94 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA > SRR4302547.4756979/1‑94 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA > SRR4302547.2444810/1‑94 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGACTA < SRR4302547.4275775/94‑1 (MQ=60)
TATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAA < SRR4302547.847056/94‑1 (MQ=60)
ATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAAT < SRR4302547.400841/94‑1 (MQ=60)
ATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAAT > SRR4302547.5131074/1‑94 (MQ=60)
ATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAAT > SRR4302547.4086360/1‑94 (MQ=60)
TTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATG < SRR4302547.4953700/94‑1 (MQ=60)
TTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACTACACCATTGGCAATATTCAGCAGGCGATTAATGA > SRR4302547.2235725/1‑94 (MQ=60)
TTCTTTTATTCACCCTGCTCACGCGGC‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGA < SRR4302547.5144435/94‑1 (MQ=60)
CTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACG < SRR4302547.904047/94‑1 (MQ=60)
CTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACG > SRR4302547.801858/1‑94 (MQ=60)
TTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGC < SRR4302547.3623692/94‑1 (MQ=60)
TTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCT > SRR4302547.949513/1‑94 (MQ=60)
TTTATTCACCCTGCCCACGCTGT‑CCACCGTGCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCT < SRR4302547.3028477/94‑1 (MQ=60)
TATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGAAATATTCAGCAGGCGATTAATGACGCTTA > SRR4302547.1025020/1‑94 (MQ=60)
TATTCACCATGCACACGCTGT‑CCACCGTGCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTA < SRR4302547.6396089/94‑1 (MQ=60)
TATGCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTA < SRR4302547.709908/94‑1 (MQ=60)
ATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTAT < SRR4302547.1812999/94‑1 (MQ=60)
ATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACAACATTGGCAATATTCAGTATGCGCTTAATGACGCTTAT > SRR4302547.34795/1‑94 (MQ=60)
AGTCACCCGGCTGACGCTGG‑CCACCGTTCCGGCCCAGGGCGATATTATCGACGACACCATTGGGAATATTCAGCAGGCGATTAATGACGCTTAT > SRR4302547.846812/1‑94 (MQ=60)
TTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA < SRR4302547.5617347/94‑1 (MQ=60)
TTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA < SRR4302547.4507206/94‑1 (MQ=60)
TTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA > SRR4302547.6453246/1‑94 (MQ=60)
TTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA < SRR4302547.267011/94‑1 (MQ=60)
TTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA > SRR4302547.21042/1‑94 (MQ=60)
TCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAA > SRR4302547.2692509/1‑94 (MQ=60)
CACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAC > SRR4302547.6146184/1‑94 (MQ=60)
CACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAC > SRR4302547.1028630/1‑94 (MQ=60)
CCCCTGCACACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACC < SRR4302547.193910/94‑1 (MQ=60)
ACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACC > SRR4302547.1921539/1‑94 (MQ=60)
ACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACC < SRR4302547.4210475/94‑1 (MQ=60)
CCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT < SRR4302547.1733864/94‑1 (MQ=60)
CCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT < SRR4302547.3638293/94‑1 (MQ=60)
CCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT < SRR4302547.5874459/94‑1 (MQ=60)
CCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT > SRR4302547.5753739/1‑94 (MQ=60)
CCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT > SRR4302547.4682686/1‑94 (MQ=60)
CTGCTCACGCTGT‑CCACCGTTCCGGCCTCCGGCGATATTATCGACGACACCATTGTCAATATTCAGCAGGTGATTAATGTCGCTTAGAACCCTG > SRR4302547.3718882/1‑94 (MQ=46)
CTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTG > SRR4302547.4544915/1‑94 (MQ=60)
TGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGA < SRR4302547.2786932/94‑1 (MQ=60)
TGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGA > SRR4302547.258952/1‑94 (MQ=60)
GCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAC > SRR4302547.2684837/1‑94 (MQ=60)
GCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAC > SRR4302547.6529944/1‑94 (MQ=60)
GCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAC > SRR4302547.1792943/1‑94 (MQ=60)
GCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAC > SRR4302547.1789800/1‑94 (MQ=60)
CTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC > SRR4302547.2106788/1‑94 (MQ=60)
CTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC > SRR4302547.5454712/1‑94 (MQ=60)
CTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC < SRR4302547.4351396/94‑1 (MQ=60)
TCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCG < SRR4302547.5885262/94‑1 (MQ=60)
ACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTG < SRR4302547.3821781/94‑1 (MQ=60)
ACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTG > SRR4302547.1633445/1‑94 (MQ=60)
ACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTG > SRR4302547.1388971/1‑94 (MQ=60)
CGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGG > SRR4302547.3115300/1‑94 (MQ=60)
CGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGG > SRR4302547.3004730/1‑94 (MQ=60)
CGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGG > SRR4302547.4215487/1‑94 (MQ=60)
GCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGG > SRR4302547.4906996/1‑94 (MQ=60)
GCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGG > SRR4302547.2866400/1‑94 (MQ=60)
GCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGG > SRR4302547.4524086/1‑94 (MQ=60)
CTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGC > SRR4302547.2620518/1‑94 (MQ=60)
CTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGC < SRR4302547.6591410/94‑1 (MQ=60)
CTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGC < SRR4302547.5475370/94‑1 (MQ=60)
TGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > SRR4302547.1362911/1‑94 (MQ=60)
TGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG < SRR4302547.3727147/94‑1 (MQ=60)
GT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGG > SRR4302547.3358412/1‑94 (MQ=60)
CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGA < SRR4302547.1521416/94‑1 (MQ=60)
cacCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGAC > SRR4302547.6208307/4‑94 (MQ=60)
cacCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGAC > SRR4302547.852265/4‑94 (MQ=60)
CC‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATGACCCTGACCGTGGGCGAGACT < SRR4302547.3853751/94‑1 (MQ=60)
acCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGcccgcgcgacc > SRR4302547.4155232/3‑83 (MQ=60)
acCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACT > SRR4302547.3341291/3‑94 (MQ=60)
CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT < SRR4302547.5660384/94‑1 (MQ=60)
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AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT > NC_000913/4311404‑4311589
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
