Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,311,496 |
+C |
coding (301/408 nt) |
phnQ ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,311,495 | 1 | . | C | 99.2%
| 918.3
/ ‑1.4
| 256 | coding (302/408 nt) | phnQ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base C (142/112); total (142/114) |
| Fisher's exact test for biased strand distribution p-value = 1.97e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
Only 100 of 275 total aligned reads displayed.
AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑C‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > NC_000913/4311404‑4311582
|
gTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑cc < 1:5009175/93‑2 (MQ=255)
gTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑cc < 2:2034849/93‑2 (MQ=255)
gTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑cc < 1:2354784/93‑2 (MQ=255)
aTGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑ccgtt < 2:4085731/93‑5 (MQ=255)
gATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTcc < 1:2478027/93‑1 (MQ=255)
gATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTcc < 2:4536707/93‑1 (MQ=255)
aTTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCg < 1:3141175/93‑1 (MQ=255)
aTTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCg > 2:5314786/1‑93 (MQ=255)
ttAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCgg > 1:2941890/1‑93 (MQ=255)
tAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGc < 1:5294207/93‑1 (MQ=255)
aTGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGccc < 1:5365600/93‑1 (MQ=255)
tgtgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCa < 1:2409295/93‑1 (MQ=255)
gtgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAg < 1:2770597/93‑1 (MQ=255)
tgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAgg < 1:683991/93‑1 (MQ=255)
ggATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGc < 1:5865200/93‑1 (MQ=255)
gATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGcc > 2:2389083/1‑93 (MQ=255)
tAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGa < 2:4977563/93‑1 (MQ=255)
tAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGa < 2:933826/93‑1 (MQ=255)
tAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGa > 2:5793394/1‑93 (MQ=255)
tAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGa > 1:1322563/1‑93 (MQ=255)
tAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGa < 1:1522905/93‑1 (MQ=255)
agagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGat < 1:5633099/93‑1 (MQ=255)
gTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGAtatt < 2:2779738/93‑1 (MQ=255)
tttCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGAtatta < 2:2556172/93‑1 (MQ=255)
tttCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGAtatta > 2:1038655/1‑93 (MQ=255)
tgtCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGAtatta < 1:1382601/91‑1 (MQ=255)
tCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATc < 2:3391884/93‑1 (MQ=255)
tCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATc > 2:3325946/1‑93 (MQ=255)
tCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATc < 1:929104/93‑1 (MQ=255)
tCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATc > 2:565411/1‑93 (MQ=255)
tttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATcga > 2:4052404/1‑93 (MQ=255)
tttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATcga > 2:4352020/1‑93 (MQ=255)
ttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATagac > 2:3680953/1‑93 (MQ=255)
tttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATcgacg < 1:1036554/93‑1 (MQ=255)
gAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGaca > 1:3595864/1‑93 (MQ=255)
ggTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACAcc > 1:4152284/1‑93 (MQ=255)
ttGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCAt < 1:4817019/93‑1 (MQ=255)
tGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCAtt < 2:1620748/93‑1 (MQ=255)
tGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCAtt > 1:2770335/1‑93 (MQ=255)
ggCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTg < 2:263986/93‑1 (MQ=255)
tAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCa > 1:1451177/1‑93 (MQ=255)
aaTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCaa > 2:5165161/1‑93 (MQ=255)
aTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAat < 2:2459492/93‑1 (MQ=255)
aTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAat > 1:768582/1‑93 (MQ=255)
gAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAatat > 2:1270880/1‑93 (MQ=255)
gAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAatat > 2:5748528/1‑93 (MQ=255)
gAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑CAGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAatat > 2:279683/1‑93 (MQ=255)
aaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTc > 2:1379618/1‑93 (MQ=255)
aaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTc < 1:4559221/93‑1 (MQ=255)
aaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTc < 1:5536279/93‑1 (MQ=255)
gCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagc > 1:4431287/1‑93 (MQ=255)
gCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagc > 2:1184420/1‑93 (MQ=255)
cTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagca < 2:1900602/93‑1 (MQ=255)
cTTTCCGCGATTTCTTTTATTCCCCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagca < 2:2281497/93‑1 (MQ=255)
tttCCTCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagcag < 2:5327372/93‑1 (MQ=255)
tCCGCTATTTCTTTTATTCCCCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGc < 1:1236596/93‑1 (MQ=255)
tCCGCTATTTCTTTTATTCACCCTGCTCACGCTTTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGc < 1:5893627/93‑1 (MQ=255)
tCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGc < 2:110865/93‑1 (MQ=255)
cGCTATTTGTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGa < 2:4716500/93‑1 (MQ=255)
cGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGa > 2:874431/1‑93 (MQ=255)
cGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGa > 2:6066798/1‑93 (MQ=255)
cTATTTCTTTTATTCCCCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAtt < 2:1548317/93‑1 (MQ=255)
cTATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAtt > 1:3367725/1‑93 (MQ=255)
tATTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGAAATTATCGCCGCAACCATTGGAAATATTCACAAGGCGATTa > 2:2691206/1‑93 (MQ=255)
aTTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGTGATTaa > 1:1806992/1‑93 (MQ=255)
aTTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTaa > 2:4887985/1‑93 (MQ=255)
aTTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTaa > 1:952504/1‑93 (MQ=255)
aTTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTaa > 2:4219888/1‑93 (MQ=255)
aTTTCTTTTATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTaa > 1:5831932/1‑93 (MQ=255)
tttttATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGAc < 2:3338090/92‑1 (MQ=255)
tttATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGc > 1:2664266/1‑93 (MQ=255)
ttATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCt > 2:3957506/1‑93 (MQ=255)
ttATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCt > 1:1085790/1‑93 (MQ=255)
ttATTCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCt < 1:4947251/93‑1 (MQ=255)
tttCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTta < 1:4009930/92‑1 (MQ=255)
ttCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtat > 2:3071449/1‑93 (MQ=255)
tCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtata < 2:3432841/93‑1 (MQ=255)
tCACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtata < 2:904613/93‑1 (MQ=255)
cACCCTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATaa > 1:3807818/1‑93 (MQ=255)
ccccTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAc < 1:1009546/92‑1 (MQ=255)
cccTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAcc > 2:4250125/1‑93 (MQ=255)
cccTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAcc > 2:4837141/1‑93 (MQ=255)
cTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCt > 1:2016167/1‑93 (MQ=255)
cTGCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCt > 1:3662650/1‑93 (MQ=255)
gCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGa < 1:1880383/93‑1 (MQ=255)
gCTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGa < 2:3539716/93‑1 (MQ=255)
cTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc > 2:3222475/1‑93 (MQ=255)
cTCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc < 2:561448/93‑1 (MQ=255)
tCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAcc > 1:3345855/1‑93 (MQ=255)
tCACGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAcc > 2:799764/1‑93 (MQ=255)
ccGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGt < 2:3189821/92‑1 (MQ=255)
ccGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGt < 2:1763389/92‑1 (MQ=255)
aCGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGt > 2:2225879/1‑93 (MQ=255)
cGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTg < 1:3491634/93‑1 (MQ=255)
cGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTg < 1:209074/93‑1 (MQ=255)
cGCTGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTg > 2:2115764/1‑93 (MQ=255)
tGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGc < 1:5207663/93‑1 (MQ=255)
tGTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGc > 2:602550/1‑93 (MQ=255)
gTCCACC‑GTTCCGGCCCAGGGCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTcggag > 1:4366570/1‑91 (MQ=255)
gTCCACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCg < 2:4421270/93‑1 (MQ=255)
|
AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑C‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > NC_000913/4311404‑4311582
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT > NC_000913/4311403‑4311589
|
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑C > SRR4302532.4559760/1‑94 (MQ=60)
AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CC > SRR4302532.1948769/1‑94 (MQ=60)
AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CC < SRR4302532.799838/94‑1 (MQ=60)
GTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑Ccg < SRR4302532.2433356/94‑3 (MQ=60)
GTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑Ccg < SRR4302532.5180868/94‑3 (MQ=60)
TAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑Ccgt > SRR4302532.1328742/1‑91 (MQ=60)
ATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTTTTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑C > SRR4302532.784467/1‑94 (MQ=60)
ATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCAGCCTGCTCACGCTGT‑CCACCGTT‑C > SRR4302532.3616174/1‑94 (MQ=60)
ATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑C > SRR4302532.3370433/1‑94 (MQ=60)
ATGATTAATGTGGATAGAGGTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑C > SRR4302532.238357/1‑94 (MQ=60)
GATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCG < SRR4302532.2560581/94‑1 (MQ=60)
ATTGATGTGCATAGAGTTTCTTTTTGAGGTTGGCTAATGAATCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGG < SRR4302532.886210/94‑1 (MQ=60)
ATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCATCGTT‑CCGG > SRR4302532.4223224/1‑94 (MQ=60)
ATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGG > SRR4302532.3039565/1‑94 (MQ=60)
ATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGG < SRR4302532.3245425/94‑1 (MQ=60)
TAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCC < SRR4302532.5477011/94‑1 (MQ=60)
ATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCA < SRR4302532.5551579/94‑1 (MQ=60)
ATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCA < SRR4302532.2498472/94‑1 (MQ=60)
ATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCA > SRR4302532.3656705/1‑94 (MQ=60)
TGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAG < SRR4302532.2489455/94‑1 (MQ=60)
GTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGG < SRR4302532.1462624/94‑1 (MQ=60)
GTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGG < SRR4302532.2863626/94‑1 (MQ=60)
TGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGC < SRR4302532.707483/94‑1 (MQ=60)
TGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGC > SRR4302532.3467465/1‑94 (MQ=60)
GGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCC < SRR4302532.6068523/94‑1 (MQ=60)
GGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCC < SRR4302532.6042860/94‑1 (MQ=60)
ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGA > SRR4302532.1366756/1‑94 (MQ=60)
TAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGAT < SRR4302532.1574341/94‑1 (MQ=60)
AGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATA < SRR4302532.5828735/94‑1 (MQ=60)
AGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATA > SRR4302532.367535/1‑94 (MQ=60)
AGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATA > SRR4302532.1416771/1‑94 (MQ=60)
GAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATAT > SRR4302532.966824/1‑94 (MQ=60)
GAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATAT < SRR4302532.2171124/94‑1 (MQ=60)
GAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATAT > SRR4302532.5912068/1‑94 (MQ=60)
GAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATAT > SRR4302532.5363510/1‑94 (MQ=60)
AGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATT < SRR4302532.4679006/94‑1 (MQ=60)
GTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTA > SRR4302532.4477649/1‑94 (MQ=60)
GTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTA < SRR4302532.5756209/94‑1 (MQ=60)
TTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTAT > SRR4302532.4837066/1‑94 (MQ=60)
TTTCTTTTGGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTAT < SRR4302532.6036532/94‑1 (MQ=60)
TGTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTAT < SRR4302532.1428938/94‑1 (MQ=60)
TTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATC < SRR4302532.6023955/94‑1 (MQ=60)
TCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCG < SRR4302532.960929/94‑1 (MQ=60)
TCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCG > SRR4302532.2685707/1‑94 (MQ=60)
TCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCG < SRR4302532.5734287/94‑1 (MQ=60)
TCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCG < SRR4302532.2836897/94‑1 (MQ=60)
TCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCG < SRR4302532.5128385/94‑1 (MQ=60)
CTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGA > SRR4302532.6071541/1‑94 (MQ=60)
TTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGAC < SRR4302532.5022888/94‑1 (MQ=60)
TTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGAC < SRR4302532.1352240/94‑1 (MQ=60)
TTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGA < SRR4302532.1071532/94‑1 (MQ=60)
TTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGAC > SRR4302532.5553581/1‑94 (MQ=60)
TGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACA > SRR4302532.3716109/1‑94 (MQ=60)
AGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACC > SRR4302532.4291585/1‑94 (MQ=60)
GGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCA > SRR4302532.4738417/1‑94 (MQ=60)
GTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCAT < SRR4302532.1061105/94‑1 (MQ=60)
TTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATT > SRR4302532.2863353/1‑94 (MQ=60)
TTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATT < SRR4302532.4982883/94‑1 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTG < SRR4302532.5507698/94‑1 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTG > SRR4302532.2479773/1‑94 (MQ=60)
CTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCA > SRR4302532.1500104/1‑94 (MQ=60)
TAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAA > SRR4302532.2892002/1‑94 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT < SRR4302532.1255814/94‑1 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT > SRR4302532.795105/1‑94 (MQ=60)
ATGAAACGCTTTCCGCTATTTCTTTTATTCACCGTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATA < SRR4302532.760129/94‑1 (MQ=60)
ATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATA > SRR4302532.4688227/1‑94 (MQ=60)
ATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATA > SRR4302532.2863573/1‑94 (MQ=60)
GAACGCTTTCCCCTATTTCTTTTATTCCCCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGCCGACACCATTGGCAATATTC < SRR4302532.2109628/94‑1 (MQ=60)
AAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTC < SRR4302532.2109629/94‑1 (MQ=60)
AAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTC > SRR4302532.1158439/1‑94 (MQ=60)
AAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTC < SRR4302532.1438507/94‑1 (MQ=60)
AACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA < SRR4302532.5728415/94‑1 (MQ=60)
AACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA < SRR4302532.4714754/94‑1 (MQ=60)
CGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGC > SRR4302532.2633211/1‑94 (MQ=60)
CGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGC > SRR4302532.4582273/1‑94 (MQ=60)
CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG > SRR4302532.3589968/1‑94 (MQ=60)
CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG < SRR4302532.1815007/94‑1 (MQ=60)
TCCGCTATTTCTTTTATTCCCCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCG < SRR4302532.1277958/94‑1 (MQ=60)
TCCGCTATTTCTTTTATTCACCCTGCTCACGCTTT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCG < SRR4302532.6097728/94‑1 (MQ=60)
CCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGA > SRR4302532.3245987/1‑94 (MQ=60)
GCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATT > SRR4302532.3480310/1‑94 (MQ=60)
TATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGTGATTAA > SRR4302532.1867291/1‑94 (MQ=60)
TATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAA > SRR4302532.6034394/1‑94 (MQ=60)
TATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAA > SRR4302532.985055/1‑94 (MQ=60)
ATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAAT < SRR4302532.1094449/94‑1 (MQ=60)
TTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATG < SRR4302532.2945614/94‑1 (MQ=60)
TCTTTTATTCCCCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGAC < SRR4302532.3924415/94‑1 (MQ=60)
TCTTTTATTCACCCTGCTCACGCTTC‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATGGGCAATATTCAGCAGGCGATTAATGAC < SRR4302532.3756227/94‑1 (MQ=60)
TCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGAC < SRR4302532.3239605/94‑1 (MQ=60)
TTTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGC > SRR4302532.2753681/1‑94 (MQ=60)
TTTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCT > SRR4302532.1122161/1‑94 (MQ=60)
TTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTT < SRR4302532.6127284/94‑1 (MQ=60)
TTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTT < SRR4302532.5117046/94‑1 (MQ=60)
TTATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTT > SRR4302532.3047576/1‑94 (MQ=60)
TATTCCCCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTA < SRR4302532.5535176/94‑1 (MQ=60)
TATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTA < SRR4302532.3507791/94‑1 (MQ=60)
TTTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTAT < SRR4302532.4145040/94‑1 (MQ=60)
ATTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTAT < SRR4302532.4457662/94‑1 (MQ=60)
TTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA < SRR4302532.546425/94‑1 (MQ=60)
TTCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA < SRR4302532.734685/94‑1 (MQ=60)
TCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAA > SRR4302532.1001231/1‑94 (MQ=60)
TCACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAA > SRR4302532.3936375/1‑94 (MQ=60)
CACCCTGCTCACGCTGT‑CCACCTTT‑CCGGCCCAGGCCGACATTATCGCCTACACCATGGGCAATATTaaccagccgaggattgcggcttttaac > SRR4302532.5337462/1‑67 (MQ=30)
CACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAC > SRR4302532.828331/1‑94 (MQ=60)
CACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAC > SRR4302532.2828434/1‑94 (MQ=60)
CACCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAC < SRR4302532.110202/94‑1 (MQ=60)
CCCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACC < SRR4302532.1043870/94‑1 (MQ=60)
CCCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCC > SRR4302532.4227879/1‑94 (MQ=60)
CCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGAGACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT > SRR4302532.2083393/1‑94 (MQ=60)
CCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT < SRR4302532.1712259/94‑1 (MQ=60)
CCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT > SRR4302532.1919408/1‑94 (MQ=60)
CCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT > SRR4302532.2083394/1‑94 (MQ=60)
CCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT > SRR4302532.3785628/1‑94 (MQ=60)
CCTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT > SRR4302532.3785629/1‑94 (MQ=60)
CTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTG > SRR4302532.2550698/1‑94 (MQ=60)
CTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTG > SRR4302532.642041/1‑94 (MQ=60)
CTGCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTG < SRR4302532.5094422/94‑1 (MQ=60)
GCTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAC < SRR4302532.1942709/94‑1 (MQ=60)
CTCACGCTGTCCCC‑CGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC < SRR4302532.1554222/94‑1 (MQ=60)
CTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC > SRR4302532.2200600/1‑94 (MQ=60)
CTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC > SRR4302532.3457540/1‑94 (MQ=60)
CTCACGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC < SRR4302532.1554221/94‑1 (MQ=60)
CGCTGTCCCC‑CGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGG < SRR4302532.533966/94‑1 (MQ=60)
CGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGG < SRR4302532.216213/94‑1 (MQ=60)
CGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGG < SRR4302532.3608625/94‑1 (MQ=60)
CGCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGG < SRR4302532.4028832/94‑1 (MQ=60)
GCTGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGG > SRR4302532.3273624/1‑94 (MQ=60)
CTGT‑CCA‑CGTTCCCGGCCCAGGCCGATATTACCGACGACACCATTGACAATATTCAGCAGCCGATTAATGACGCTTATACCCCTGACCGTGGGC < SRR4302532.1155618/94‑1 (MQ=60)
TGT‑CCACCGTT‑CCGGCCCAGGGCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTcggag > SRR4302532.4514684/1‑89 (MQ=60)
TGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG < SRR4302532.5387254/94‑1 (MQ=60)
TGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG < SRR4302532.5387253/94‑1 (MQ=60)
TGT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG < SRR4302532.3978844/94‑1 (MQ=60)
GT‑CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGA > SRR4302532.2030435/1‑94 (MQ=60)
CCACCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGA > SRR4302532.2949498/1‑94 (MQ=60)
cacCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGAC > SRR4302532.2632544/4‑94 (MQ=60)
cacCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGAC > SRR4302532.5167617/4‑94 (MQ=60)
cacCGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGAC > SRR4302532.4080381/4‑94 (MQ=60)
CC‑CGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACT < SRR4302532.2894709/94‑1 (MQ=60)
CC‑CGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACT < SRR4302532.3700936/94‑1 (MQ=60)
CGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT < SRR4302532.156849/94‑1 (MQ=60)
CGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT > SRR4302532.4056087/1‑94 (MQ=60)
CGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT < SRR4302532.4192508/94‑1 (MQ=60)
|
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CGTT‑CCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT > NC_000913/4311403‑4311589
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
