Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,500,673 |
C→T |
T109T (ACG→ACA) |
yi41 ← |
IS4 hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,500,673 | 0 | C | T | 85.9%
| 822.7
/ 94.5
| 283 | T109T (ACG→ACA) | yi41 | IS4 hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (18/22); new base T (112/131); total (130/153) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.43e-01 |
Only 100 of 297 total aligned reads displayed.
GTGTGCGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGCAGCAT > NC_000913/4500582‑4500765
|
gtgCGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTtgtg > 1:281355/1‑93 (MQ=255)
tgCGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGa < 2:6466842/93‑1 (MQ=255)
gcCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAaca > 1:805743/1‑93 (MQ=255)
ccAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAacac < 1:3606620/93‑1 (MQ=255)
ccAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAacac > 2:4902439/1‑93 (MQ=255)
ccAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAacac < 2:5672693/93‑1 (MQ=255)
cAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACAcg > 2:5848705/1‑93 (MQ=255)
aGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACAcgc > 1:1836178/1‑93 (MQ=255)
gAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACAcgcg < 2:6254109/93‑1 (MQ=255)
aaCACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACgcgg < 1:6497583/93‑1 (MQ=255)
acacacCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACgcggc < 2:4097616/93‑1 (MQ=255)
acacCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGcggcgg > 1:3700303/1‑93 (MQ=255)
acacCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGcggcgg < 2:6505816/93‑1 (MQ=255)
cacCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGa > 2:1623975/1‑93 (MQ=255)
acCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGAc < 2:5961646/93‑1 (MQ=255)
ccATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACa > 1:5802558/1‑93 (MQ=255)
ccATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACa < 1:5741628/93‑1 (MQ=255)
ccATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACa > 2:4265451/1‑93 (MQ=255)
ccATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACa < 2:4770410/93‑1 (MQ=255)
ccATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACa > 1:1723375/1‑93 (MQ=255)
ccATCGATGGCCAGCAGATTCAGGCCGTCCCAGTGCGGATGCGGCGTGGCGTTATGCCAGCGCTGCGCTGTTTTTGTGAACACGcggcgggcc > 1:1803757/1‑90 (MQ=255)
tCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGcc < 1:4814100/93‑1 (MQ=255)
cGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCt < 2:2922253/93‑1 (MQ=255)
cGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCt < 1:1023949/93‑1 (MQ=255)
tGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCAc < 1:2875818/93‑1 (MQ=255)
tGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGGTATGCCAGAGCTGCGCCGTTTTTGTGTACACGCGGCGGACAGCCTCAc > 2:4579545/1‑93 (MQ=255)
ggCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACt > 1:2648450/1‑93 (MQ=255)
gCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACtt > 1:891685/1‑93 (MQ=255)
gCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACtt > 1:2540066/1‑93 (MQ=255)
agcagGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTccc > 1:1897516/1‑93 (MQ=255)
agcagGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTccc < 1:2100193/93‑1 (MQ=255)
agcagGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTccc < 1:5201801/93‑1 (MQ=255)
gcagGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCa < 1:6623155/93‑1 (MQ=255)
cagGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAg > 2:5241915/1‑93 (MQ=255)
agGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAgg > 2:5524290/1‑93 (MQ=255)
ggTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGgcg > 2:3994811/1‑93 (MQ=255)
gTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGgcgc > 2:1446203/1‑93 (MQ=255)
gTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGgcgc < 2:6375411/93‑1 (MQ=255)
gTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGgcgc > 1:5343322/1‑93 (MQ=255)
tCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCt < 1:4156508/93‑1 (MQ=255)
tCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCt > 1:1472266/1‑93 (MQ=255)
gcAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCt < 2:5578115/92‑1 (MQ=255)
cAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTg > 1:5451593/1‑93 (MQ=255)
cAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTg > 1:1335124/1‑93 (MQ=255)
ggCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGc > 1:4095174/1‑93 (MQ=255)
ggCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGc < 2:1240877/93‑1 (MQ=255)
ggCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGc > 2:2878419/1‑93 (MQ=255)
cGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCggg < 1:3363852/93‑1 (MQ=255)
gCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGTGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGc > 2:6058195/1‑93 (MQ=255)
gCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGc < 2:3490357/93‑1 (MQ=255)
cACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGcc < 2:2747607/93‑1 (MQ=255)
cACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGcc > 1:1070336/1‑93 (MQ=255)
ccAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTg > 1:5672355/1‑93 (MQ=255)
aGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGaa > 1:727963/1‑93 (MQ=255)
tGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATa > 1:1132871/1‑93 (MQ=255)
cGGATGGGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATaag > 2:2638791/1‑92 (MQ=255)
cGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAAc < 1:3180426/93‑1 (MQ=255)
cGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAAc < 2:4694330/93‑1 (MQ=255)
cGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAAc > 1:2304591/1‑93 (MQ=255)
gATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACgg > 2:1192127/1‑93 (MQ=255)
gATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACgg < 1:4979501/93‑1 (MQ=255)
aTGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGCGCCTGAATAACgga > 2:5911858/1‑92 (MQ=255)
gcggcgTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCAc > 1:6346093/1‑93 (MQ=255)
gcggcgTGGCGTTATGCCAGAGCTGCGCTGGTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCAc < 2:2588858/93‑1 (MQ=255)
cggcgTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACt < 2:3269746/93‑1 (MQ=255)
cggcgTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCAGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACt > 1:2993035/1‑93 (MQ=255)
gcgtggcgtTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTgg > 2:3678595/1‑93 (MQ=255)
gcgtggcgtTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTgg > 2:706117/1‑93 (MQ=255)
cgtggcgtTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTggg < 2:2348297/93‑1 (MQ=255)
gtggcgtTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTgggg < 1:3920593/93‑1 (MQ=255)
gtggcgtTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTgggg > 2:4132526/1‑93 (MQ=255)
tggcgtTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTggggg > 2:831106/1‑93 (MQ=255)
ggcgtTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGc > 2:3840359/1‑93 (MQ=255)
gtTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAAc < 2:3178764/93‑1 (MQ=255)
gtTATGCCAGAGCTGCGCTGTTTTCGTGACCACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAAc < 2:4182833/93‑1 (MQ=255)
aTGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGaa < 1:2426197/93‑1 (MQ=255)
aTGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGaa < 1:3760996/93‑1 (MQ=255)
aTGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGaa < 2:2152187/93‑1 (MQ=255)
ccAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAggg > 1:4700105/1‑93 (MQ=255)
cAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAgggg < 2:4412269/93‑1 (MQ=255)
agagCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGc > 1:6086409/1‑93 (MQ=255)
agagCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGc < 2:5488888/93‑1 (MQ=255)
agCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGa < 2:5273304/93‑1 (MQ=255)
agCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGa < 2:757847/93‑1 (MQ=255)
gCTGCGCTGTTTTTGTGAACGCGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGAt < 1:3284879/93‑1 (MQ=255)
gCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGAt > 1:2042506/1‑93 (MQ=255)
cTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGAtt > 2:381691/1‑93 (MQ=255)
cTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGAtt < 1:5928570/93‑1 (MQ=255)
cTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGAtt < 2:1509332/93‑1 (MQ=255)
tGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGGTTg < 2:1963084/93‑1 (MQ=255)
tGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTg < 2:785762/93‑1 (MQ=255)
gcgcTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGc < 2:5028363/93‑1 (MQ=255)
gcgcTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGc > 2:2253572/1‑93 (MQ=255)
gcTGTTTTTGTGAACACGCGGCGGACACCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCGCTGGGGGCAACGAAGGGGCGATTGccc < 2:5097101/93‑1 (MQ=255)
cTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCg > 2:3873620/1‑93 (MQ=255)
cTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCg > 2:1020114/1‑93 (MQ=255)
tGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCgg < 2:862594/93‑1 (MQ=255)
ttttTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGgca < 1:4380415/93‑1 (MQ=255)
ttttTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGgca > 1:6141962/1‑93 (MQ=255)
tCGTGAACACGCGGCGGACAGCCTCCCTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGgcagca < 1:1302594/93‑1 (MQ=255)
|
GTGTGCGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGCAGCAT > NC_000913/4500582‑4500765
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGTGTGCGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATG > NC_000913/4500580‑4500766
|
CGGTGTGCGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTT < SRR4302547.595800/94‑1 (MQ=60)
GTGTGCGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGT < SRR4302547.6457695/94‑1 (MQ=60)
GTGTGCGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGT < SRR4302547.1214435/94‑1 (MQ=60)
GTGTGCGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGT < SRR4302547.1537964/94‑1 (MQ=60)
TGTGCGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTG > SRR4302547.1072626/1‑94 (MQ=60)
TGTGCGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTG > SRR4302547.286589/1‑94 (MQ=60)
GTGCGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGA < SRR4302547.6232038/94‑1 (MQ=60)
GCGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAAC < SRR4302547.1357781/94‑1 (MQ=60)
CGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACA > SRR4302547.251333/1‑94 (MQ=60)
CGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACA > SRR4302547.821014/1‑94 (MQ=60)
GCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACAC < SRR4302547.134665/94‑1 (MQ=60)
GCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACAC < SRR4302547.4522819/94‑1 (MQ=60)
GCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACAC < SRR4302547.4837582/94‑1 (MQ=60)
CCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACG < SRR4302547.3729960/94‑1 (MQ=60)
CCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACG > SRR4302547.5153664/1‑94 (MQ=60)
CCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACG < SRR4302547.3680170/94‑1 (MQ=60)
CAGAGCACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGC > SRR4302547.2821107/1‑94 (MQ=60)
CAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGC > SRR4302547.1872477/1‑94 (MQ=60)
CAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGC > SRR4302547.6159427/1‑94 (MQ=60)
CAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGC < SRR4302547.2763466/94‑1 (MQ=60)
CAGAACACACCATCGATGGCCAGCAGGGTCAGGACGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGC > SRR4302547.6556332/1‑94 (MQ=60)
AGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCG < SRR4302547.1454705/94‑1 (MQ=60)
AGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCG > SRR4302547.3872741/1‑94 (MQ=60)
AGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCG > SRR4302547.1115731/1‑94 (MQ=60)
AACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGC < SRR4302547.6632825/94‑1 (MQ=60)
AACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGC > SRR4302547.2027920/1‑94 (MQ=60)
ACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCG < SRR4302547.4028829/94‑1 (MQ=60)
ACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCG > SRR4302547.5602234/1‑94 (MQ=60)
ACACACCACCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCG < SRR4302547.1154541/94‑1 (MQ=60)
CACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGG > SRR4302547.5567476/1‑94 (MQ=60)
CACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGG > SRR4302547.3775819/1‑94 (MQ=60)
ACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACA > SRR4302547.5922608/1‑94 (MQ=60)
ACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACA > SRR4302547.1757252/1‑94 (MQ=60)
ACCATCGATGGCCAGCAGATTCAGGCCGTCCCAGTGCGGATGCGGCGTGGCGTTATGCCAGCGCTGCGCTGTTTTTGTGAACACGCGGCGGgcc > SRR4302547.1839422/1‑91 (MQ=60)
CCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAG < SRR4302547.5860279/94‑1 (MQ=60)
TCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCT < SRR4302547.3377723/94‑1 (MQ=60)
TCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCT < SRR4302547.4913870/94‑1 (MQ=60)
CGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTC < SRR4302547.1044046/94‑1 (MQ=60)
CGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTC < SRR4302547.2104456/94‑1 (MQ=60)
ATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCAC < SRR4302547.3972773/94‑1 (MQ=60)
TGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACT < SRR4302547.2933233/94‑1 (MQ=60)
TGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACT > SRR4302547.1855251/1‑94 (MQ=60)
TGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACT < SRR4302547.4460342/94‑1 (MQ=60)
TGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACT > SRR4302547.2701719/1‑94 (MQ=60)
GGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTT > SRR4302547.2591375/1‑94 (MQ=60)
GGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTT > SRR4302547.908833/1‑94 (MQ=60)
GGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTT < SRR4302547.619569/94‑1 (MQ=60)
GCCAGCAGGGTCAGGCCGCACCAGTGCGGACGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTC < SRR4302547.2207700/94‑1 (MQ=60)
CAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCC > SRR4302547.1935051/1‑94 (MQ=60)
AGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCTCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCA < SRR4302547.3834105/94‑1 (MQ=60)
AGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCA < SRR4302547.2142055/94‑1 (MQ=60)
AGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCA < SRR4302547.3809512/94‑1 (MQ=60)
AGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCA < SRR4302547.5014096/94‑1 (MQ=60)
AGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCA < SRR4302547.903717/94‑1 (MQ=60)
AGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCA < SRR4302547.3015788/94‑1 (MQ=60)
AGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCA < SRR4302547.5308838/94‑1 (MQ=60)
GCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAG < SRR4302547.1170970/94‑1 (MQ=60)
GCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAG < SRR4302547.151222/94‑1 (MQ=60)
GCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAG < SRR4302547.6761019/94‑1 (MQ=60)
CAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGG < SRR4302547.2884352/94‑1 (MQ=60)
CAGGGTCAGGCCGCACCAGTGCGGATGCGGCGGGGCGTTATGCCAGAGCTGCGCTGGTTTTGTGGACACGCGGCGGACAGGCTCACCTCCCAGG > SRR4302547.2607257/1‑94 (MQ=60)
AGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGC < SRR4302547.794399/94‑1 (MQ=60)
GGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGC > SRR4302547.5453481/1‑94 (MQ=60)
GTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCT < SRR4302547.3206251/94‑1 (MQ=60)
GTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCT < SRR4302547.3010812/94‑1 (MQ=60)
GTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCT > SRR4302547.1501672/1‑94 (MQ=60)
GTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCT < SRR4302547.216651/94‑1 (MQ=60)
TCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTG < SRR4302547.4241191/94‑1 (MQ=60)
TCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTG > SRR4302547.5564223/1‑94 (MQ=60)
TCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTG > SRR4302547.1361967/1‑94 (MQ=60)
CAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGG > SRR4302547.210052/1‑94 (MQ=60)
CAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGG < SRR4302547.1583668/94‑1 (MQ=60)
AGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCGTCACTTCACAGGCGCTGGC > SRR4302547.825705/1‑94 (MQ=60)
AGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGC > SRR4302547.4178451/1‑94 (MQ=60)
GGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCG < SRR4302547.5440857/94‑1 (MQ=60)
GGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCG > SRR4302547.2473449/1‑94 (MQ=60)
GCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGG < SRR4302547.5126850/94‑1 (MQ=60)
CCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGG < SRR4302547.5965572/94‑1 (MQ=60)
CGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGC < SRR4302547.3432147/94‑1 (MQ=60)
CGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGC < SRR4302547.5870295/94‑1 (MQ=60)
CGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGC > SRR4302547.1934402/1‑94 (MQ=60)
GCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCC > SRR4302547.1091654/1‑94 (MQ=60)
CACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGGCT > SRR4302547.3672789/1‑94 (MQ=60)
ACCAGTGCGGATGCGGCGTGGCGTTATGCCAGATCTGCGCTGTTTTTGTGAACACGCGGCGTACAGCCTCACTTCCCAGGCGCTGCCGGGCCTG < SRR4302547.4281595/94‑1 (MQ=60)
ACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTG > SRR4302547.5789478/1‑94 (MQ=60)
ACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTG > SRR4302547.6379690/1‑94 (MQ=60)
CCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGA > SRR4302547.1883870/1‑94 (MQ=60)
CCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGCGCCTGA > SRR4302547.5540115/1‑94 (MQ=60)
CAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAA > SRR4302547.741537/1‑94 (MQ=60)
CAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAA > SRR4302547.28804/1‑94 (MQ=60)
CAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAA > SRR4302547.3427712/1‑94 (MQ=60)
GTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATA > SRR4302547.1155740/1‑94 (MQ=60)
GTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCCGGCGGGCCTGAATA > SRR4302547.2544517/1‑94 (MQ=60)
TGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAA > SRR4302547.5848649/1‑94 (MQ=60)
GCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAAC > SRR4302547.2351296/1‑94 (MQ=60)
CGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACG < SRR4302547.3243814/94‑1 (MQ=60)
GGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGG > SRR4302547.1766329/1‑94 (MQ=60)
GATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGC < SRR4302547.5082487/94‑1 (MQ=60)
TGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCAC > SRR4302547.6478284/1‑94 (MQ=60)
GCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACT < SRR4302547.4803357/94‑1 (MQ=60)
GCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCAGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACT > SRR4302547.3052573/1‑94 (MQ=60)
CGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTG < SRR4302547.2676303/94‑1 (MQ=60)
GGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGG > SRR4302547.1786444/1‑94 (MQ=60)
GGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGG > SRR4302547.6736112/1‑94 (MQ=60)
GCGTGGCGTTATGCCAGAGCTGCGCTGTTTGTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGG < SRR4302547.2839648/94‑1 (MQ=60)
GCGTGGCATTATGCTAGAGCTGCGGTGTTTTTGTGAACACGCGGCGGACAGCCTCCCTTCCCAGGCGCTGTCGGGCCTGAATAACGGCAATGGG < SRR4302547.4552652/94‑1 (MQ=60)
CGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGG < SRR4302547.6647972/94‑1 (MQ=60)
CGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGG < SRR4302547.4213924/94‑1 (MQ=60)
CGTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGG > SRR4302547.3688419/1‑94 (MQ=60)
GTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGG < SRR4302547.4000312/94‑1 (MQ=60)
GTGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGG > SRR4302547.6777774/1‑94 (MQ=60)
TGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGC > SRR4302547.677847/1‑94 (MQ=60)
TGGCGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGC < SRR4302547.2397266/94‑1 (MQ=60)
CGTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAAC < SRR4302547.3670729/94‑1 (MQ=60)
GTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACG < SRR4302547.1450909/94‑1 (MQ=60)
GTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACG < SRR4302547.2027110/94‑1 (MQ=60)
GTTATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACG < SRR4302547.333681/94‑1 (MQ=60)
TATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAA > SRR4302547.6045355/1‑94 (MQ=60)
ATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAG < SRR4302547.2475285/94‑1 (MQ=60)
ATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAG < SRR4302547.5855352/94‑1 (MQ=60)
ATGCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAG < SRR4302547.3837729/94‑1 (MQ=60)
GCCAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGG > SRR4302547.4797449/1‑94 (MQ=60)
GCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGG < SRR4302547.4577362/94‑1 (MQ=60)
CCAGAGCTGCGCTGTTTTTGCGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGG > SRR4302547.6603559/1‑94 (MQ=60)
CAGAGCTGCGCTGTTTTTGTGAACGCGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGAAACGAAGGGGG > SRR4302547.5325992/1‑94 (MQ=60)
CAGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGC > SRR4302547.6212671/1‑94 (MQ=60)
AGAGCTGCGTTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCAatgtcaagatcgaaagagcg < SRR4302547.5390309/94‑21 (MQ=60)
AGAGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCG < SRR4302547.6267631/94‑1 (MQ=60)
AGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGAT > SRR4302547.951969/1‑94 (MQ=60)
AGCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGAT > SRR4302547.2083250/1‑94 (MQ=60)
GCTGCGCTGTTTTTGTGAACGCGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATT < SRR4302547.3350763/94‑1 (MQ=60)
GCTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATT < SRR4302547.5861986/94‑1 (MQ=60)
CTGCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTG < SRR4302547.6051472/94‑1 (MQ=60)
GCGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCC > SRR4302547.4077886/1‑94 (MQ=60)
CGCTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCC < SRR4302547.3136071/94‑1 (MQ=60)
CGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCC < SRR4302547.1857565/94‑1 (MQ=60)
CTGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGG > SRR4302547.6331858/1‑94 (MQ=60)
TGTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGC > SRR4302547.790342/1‑94 (MQ=60)
TGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGC < SRR4302547.4975050/94‑1 (MQ=60)
GTTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGCA > SRR4302547.6269395/1‑94 (MQ=60)
TTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGCAG < SRR4302547.4470472/94‑1 (MQ=60)
TTTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGCAG < SRR4302547.1270279/94‑1 (MQ=60)
TTTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGCAGC < SRR4302547.3286600/94‑1 (MQ=60)
TTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGCAGCA > SRR4302547.413964/1‑94 (MQ=60)
TTTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGCAGCA < SRR4302547.1070895/94‑1 (MQ=60)
TTGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGCAGCAT < SRR4302547.3061639/94‑1 (MQ=60)
TCGTGAACACGCGGCGGACAGCCTCCCTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGCAGCAT < SRR4302547.1328801/94‑1 (MQ=60)
TGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATG < SRR4302547.4275767/94‑1 (MQ=60)
CGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATG < SRR4302547.4202963/94‑1 (MQ=60)
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CGGTGTGCGCCAGAACACACCATCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATG > NC_000913/4500580‑4500766
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
