Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,637,055 |
A→G |
S437G (AGT→GGT) |
creD → |
CreD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,637,055 | 0 | A | G | 85.3%
| 659.8
/ 98.4
| 258 | S437G (AGT→GGT) | creD | CreD |
| Reads supporting (aligned to +/- strand): ref base A (20/18); new base G (107/113); total (127/131) |
| Fisher's exact test for biased strand distribution p-value = 7.26e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.45e-01 |
Only 100 of 260 total aligned reads displayed.
AACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGG > NC_000913/4636964‑4637146
|
aCCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGt > 2:537139/1‑93 (MQ=255)
aCCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGt > 1:3151299/1‑93 (MQ=255)
tgtgCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAaaga < 2:2481819/93‑1 (MQ=255)
tgtgCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAaaga > 2:1526121/1‑93 (MQ=255)
gtgCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAaagaa < 1:4831397/93‑1 (MQ=255)
tgCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAATATGAAAGCCGTTAaagaag < 1:6499035/93‑1 (MQ=255)
tgCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAaagaag < 1:6210204/93‑1 (MQ=255)
cTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGtt > 1:385520/1‑93 (MQ=255)
cTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGATTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGtt > 2:1803861/1‑93 (MQ=255)
tggtggtggCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTa > 1:3188694/1‑93 (MQ=255)
ggtggtggCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTAc > 2:4124251/1‑93 (MQ=255)
gtggtggCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACa < 1:2718026/93‑1 (MQ=255)
tggtggCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACaa < 2:3152792/93‑1 (MQ=255)
gtggCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACg < 2:3728861/93‑1 (MQ=255)
ggCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGa > 2:1273247/1‑93 (MQ=255)
ggCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGa < 2:4588234/93‑1 (MQ=255)
ggCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGa > 2:4058196/1‑93 (MQ=255)
gcgcTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGAc < 1:262566/93‑1 (MQ=255)
tGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATg > 1:6407041/1‑93 (MQ=255)
tGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATg < 2:1104009/93‑1 (MQ=255)
tGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATg > 2:6283098/1‑93 (MQ=255)
tGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATg < 1:2118280/93‑1 (MQ=255)
ggCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGa < 1:5909735/93‑1 (MQ=255)
ggCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGa < 1:4799940/93‑1 (MQ=255)
gCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAg < 2:4961067/93‑1 (MQ=255)
ccGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGt > 2:4531333/1‑93 (MQ=255)
cGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGtt < 1:76230/93‑1 (MQ=255)
cGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGtt < 2:5866667/93‑1 (MQ=255)
cGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGtt < 2:5535503/93‑1 (MQ=255)
ggCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTa > 2:5018159/1‑93 (MQ=255)
ggCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTa > 2:3404224/1‑93 (MQ=255)
ggCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACCATGAGTTa > 1:5271315/1‑93 (MQ=255)
gCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTAc > 2:48318/1‑93 (MQ=255)
gCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTAc < 2:4951816/93‑1 (MQ=255)
gCATGATGTTTGTGACCCCTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTAc < 1:3691659/93‑1 (MQ=255)
cATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACg < 1:4399620/93‑1 (MQ=255)
cATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACg < 2:3792397/93‑1 (MQ=255)
atgatgTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGGTACGt > 1:5642584/1‑93 (MQ=255)
atgatgATTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGt > 1:6033319/1‑93 (MQ=255)
tgatgTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTa > 1:3306470/1‑93 (MQ=255)
tgatgTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTa < 2:1586461/93‑1 (MQ=255)
tgatgTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTa > 1:6640716/1‑93 (MQ=255)
tgatgTTGGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTa < 2:5894010/93‑1 (MQ=255)
gatgTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTAt > 1:3996973/1‑93 (MQ=255)
gatgTTTGTGACCCGTAATATCGACTGGGATGTGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTAt > 2:709319/1‑93 (MQ=255)
atgTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATc < 2:348933/93‑1 (MQ=255)
atgTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATc < 2:298718/93‑1 (MQ=255)
tggttGTCACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCt < 1:6335886/90‑1 (MQ=255)
tgTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCt < 2:2903355/93‑1 (MQ=255)
tgTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCt > 1:5332401/1‑93 (MQ=255)
tgTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCt < 1:2261752/93‑1 (MQ=255)
gTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTg < 2:6159467/93‑1 (MQ=255)
gTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTg < 1:1965862/93‑1 (MQ=255)
tttGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTgg > 1:4994207/1‑93 (MQ=255)
ttGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGa < 2:3232920/93‑1 (MQ=255)
tgtgACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGaa > 1:3265317/1‑93 (MQ=255)
gACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATa > 1:3436976/1‑93 (MQ=255)
gACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATa < 1:301230/93‑1 (MQ=255)
gACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATa < 2:938174/93‑1 (MQ=255)
aCCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATaa > 2:3693118/1‑93 (MQ=255)
ccGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAgg < 2:1257881/93‑1 (MQ=255)
gTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGtt < 1:853077/93‑1 (MQ=255)
gTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGtt > 2:1401832/1‑93 (MQ=255)
tAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTg > 2:2769649/1‑93 (MQ=255)
tAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTg > 1:1398930/1‑93 (MQ=255)
aaTATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGa < 1:4878639/93‑1 (MQ=255)
aaTATCGACTGGTATGCATTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGa < 2:5260583/93‑1 (MQ=255)
tatCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGaaa > 2:3991271/1‑93 (MQ=255)
tGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGATTTACGTATCTGGAAATAAGGTTGAAAAATaaaa < 1:3424859/93‑1 (MQ=255)
tGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATaaaa > 2:61984/1‑93 (MQ=255)
tGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATaaaa > 2:4449873/1‑93 (MQ=255)
ggTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATaaaaa > 1:1723019/1‑93 (MQ=255)
ggTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATaaaaa > 2:5211643/1‑93 (MQ=255)
ggTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATaaaaa > 1:548955/1‑93 (MQ=255)
gTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAAc < 2:3021899/93‑1 (MQ=255)
tATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACg > 1:3738357/1‑93 (MQ=255)
aTGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACgg < 1:920056/93‑1 (MQ=255)
aTGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACgg < 2:5128804/93‑1 (MQ=255)
aTGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACgg < 2:2793510/93‑1 (MQ=255)
tGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGgc > 2:1822607/1‑93 (MQ=255)
gCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGGATCTGGAAATAAGGTTGAAAAATAAAAACggag > 2:6374916/1‑91 (MQ=255)
gTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCt > 2:2078459/1‑93 (MQ=255)
ttttCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTa > 1:355800/1‑93 (MQ=255)
cACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTaaaaa < 1:5165809/93‑1 (MQ=255)
aCTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAg > 2:202640/1‑93 (MQ=255)
cTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAgc > 2:551072/1‑93 (MQ=255)
cTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAgc < 1:4983780/93‑1 (MQ=255)
cTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAgc < 1:4618213/93‑1 (MQ=255)
cTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAgc < 2:3769303/93‑1 (MQ=255)
cTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAgc > 2:359025/1‑93 (MQ=255)
gCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAgcgc < 1:2151530/93‑1 (MQ=255)
cGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCg > 2:5447754/1‑93 (MQ=255)
cGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCg < 1:2682033/93‑1 (MQ=255)
gAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGt < 2:4310987/93‑1 (MQ=255)
aaTGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGtttt < 1:5776508/93‑1 (MQ=255)
aaTGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATCAAAACGGCGCTAAAAAGCGCCGtttt > 1:1627259/1‑93 (MQ=255)
aTGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGttttt < 2:1059472/93‑1 (MQ=255)
aGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGa < 1:1525581/93‑1 (MQ=255)
gCCGGTAAAGAAGATACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGAc > 1:4254831/1‑93 (MQ=255)
gCCGGTAAAAAAGTTACAACGGACGATGAGTTACGTTTCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGAc < 1:2497499/93‑1 (MQ=255)
|
AACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGG > NC_000913/4636964‑4637146
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTG > NC_000913/4636963‑4637148
|
GAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGG < SRR4302547.3169877/94‑1 (MQ=60)
AACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGT < SRR4302547.3995171/94‑1 (MQ=60)
AACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGT > SRR4302547.3213931/1‑94 (MQ=60)
AACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATCAAAGCCAGT < SRR4302547.6598953/94‑1 (MQ=60)
CAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAA > SRR4302547.1982426/1‑94 (MQ=60)
AGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAG < SRR4302547.5076245/94‑1 (MQ=60)
AGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAG > SRR4302547.5205131/1‑94 (MQ=60)
GTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAG < SRR4302547.4931553/94‑1 (MQ=60)
TGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAATATGAAAGCCGTTAAAGAAGT < SRR4302547.6634305/94‑1 (MQ=60)
TGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGT < SRR4302547.4970022/94‑1 (MQ=60)
TGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGT < SRR4302547.6339158/94‑1 (MQ=60)
GCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTT > SRR4302547.392665/1‑94 (MQ=60)
GCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTT > SRR4302547.4870852/1‑94 (MQ=60)
CTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTA > SRR4302547.3252240/1‑94 (MQ=60)
TGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTAC < SRR4302547.6527236/94‑1 (MQ=60)
GGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACA > SRR4302547.4184657/1‑94 (MQ=60)
GTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAA < SRR4302547.2772594/94‑1 (MQ=60)
GTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAA < SRR4302547.6694614/94‑1 (MQ=60)
GGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACG > SRR4302547.1571699/1‑94 (MQ=60)
GGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACG < SRR4302547.6305694/94‑1 (MQ=60)
GCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACG < SRR4302547.267469/94‑1 (MQ=60)
CTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATG > SRR4302547.2221730/1‑94 (MQ=60)
CTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATG > SRR4302547.6540664/1‑94 (MQ=60)
CTGGCCGGCACGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATG < SRR4302547.2055478/94‑1 (MQ=60)
TGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGA > SRR4302547.5725870/1‑94 (MQ=60)
TGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGA < SRR4302547.2160501/94‑1 (MQ=60)
GGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAG < SRR4302547.4899401/94‑1 (MQ=60)
GGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAG < SRR4302547.6032117/94‑1 (MQ=60)
CCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTT < SRR4302547.3623729/94‑1 (MQ=60)
CGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTA < SRR4302547.77662/94‑1 (MQ=60)
CGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTA > SRR4302547.3873217/1‑94 (MQ=60)
CGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACCATGAGTTA > SRR4302547.5379942/1‑94 (MQ=60)
GCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACG < SRR4302547.6507869/94‑1 (MQ=60)
GCATGATGTTTGTGACCCCTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACG < SRR4302547.3767024/94‑1 (MQ=60)
CATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGT < SRR4302547.4490213/94‑1 (MQ=60)
CATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGT > SRR4302547.5343174/1‑94 (MQ=60)
CATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGT > SRR4302547.6116435/1‑94 (MQ=60)
CATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGT > SRR4302547.4910422/1‑94 (MQ=60)
CATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGT > SRR4302547.2688177/1‑94 (MQ=60)
CATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGGTACGT > SRR4302547.5759061/1‑94 (MQ=60)
CATGATGATTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGT > SRR4302547.6158524/1‑94 (MQ=60)
ATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTTACTGCCGAAAATGAAAGCCGGGAAAGAAGTTACCACGGACGATGAGTTAAGTA > SRR4302547.3477462/1‑94 (MQ=60)
ATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTA > SRR4302547.5874244/1‑94 (MQ=60)
ATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTA > SRR4302547.88614/1‑94 (MQ=60)
ATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTA > SRR4302547.3373122/1‑94 (MQ=60)
ATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTA > SRR4302547.3435715/1‑94 (MQ=60)
ATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTA < SRR4302547.355506/94‑1 (MQ=60)
ATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTA > SRR4302547.6778942/1‑94 (MQ=60)
TGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTAT > SRR4302547.4078225/1‑94 (MQ=60)
TGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTAT < SRR4302547.6644702/94‑1 (MQ=60)
ATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCT > SRR4302547.5442301/1‑94 (MQ=60)
ATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCT > SRR4302547.3744048/1‑94 (MQ=60)
ATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCAAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTGCGTATCT < SRR4302547.2340034/94‑1 (MQ=60)
TGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTG < SRR4302547.2307449/94‑1 (MQ=60)
TGGTTGTCACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTG < SRR4302547.6467809/94‑1 (MQ=60)
GTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGG < SRR4302547.2933110/94‑1 (MQ=60)
GTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGG < SRR4302547.2004899/94‑1 (MQ=60)
GTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGG > SRR4302547.5097468/1‑94 (MQ=60)
TTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGA > SRR4302547.5228807/1‑94 (MQ=60)
TTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAA < SRR4302547.3165331/94‑1 (MQ=60)
TTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAA > SRR4302547.3330638/1‑94 (MQ=60)
TTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAA > SRR4302547.5908080/1‑94 (MQ=60)
GTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAAT > SRR4302547.5393680/1‑94 (MQ=60)
GTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAAT < SRR4302547.6787491/94‑1 (MQ=60)
TGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATA > SRR4302547.3247211/1‑94 (MQ=60)
GGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATA > SRR4302547.3507050/1‑94 (MQ=60)
GACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAA < SRR4302547.306849/94‑1 (MQ=60)
CCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGGGTTACGTATCTGGAAATAAGG > SRR4302547.4963670/1‑94 (MQ=60)
CCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGG < SRR4302547.1793001/94‑1 (MQ=60)
CCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGG > SRR4302547.5542996/1‑94 (MQ=60)
CGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTT > SRR4302547.728513/1‑94 (MQ=60)
GTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTG > SRR4302547.1426919/1‑94 (MQ=60)
GTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTG < SRR4302547.869367/94‑1 (MQ=60)
GTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTG < SRR4302547.5827927/94‑1 (MQ=60)
AATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAA < SRR4302547.4979720/94‑1 (MQ=60)
AATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAA < SRR4302547.4996136/94‑1 (MQ=60)
AATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAA > SRR4302547.3362598/1‑94 (MQ=60)
AATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAA > SRR4302547.1622233/1‑94 (MQ=60)
TATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAA > SRR4302547.4723835/1‑94 (MQ=60)
ATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAA > SRR4302547.2677988/1‑94 (MQ=60)
TGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGATTTACGTATCTGGAAATAAGGTTGAAAAATAAAAA < SRR4302547.3494603/94‑1 (MQ=60)
TGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAA > SRR4302547.558866/1‑94 (MQ=60)
TGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAA > SRR4302547.2836603/1‑94 (MQ=60)
TGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAA > SRR4302547.2736313/1‑94 (MQ=60)
TGGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAA > SRR4302547.1756889/1‑94 (MQ=60)
GGTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAAC < SRR4302547.2176209/94‑1 (MQ=60)
GGTATGCGTTTTCACTGCAGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAAC < SRR4302547.4711089/94‑1 (MQ=60)
GTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACG < SRR4302547.3270590/94‑1 (MQ=60)
GTATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACG < SRR4302547.537913/94‑1 (MQ=60)
GTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACG > SRR4302547.3814680/1‑94 (MQ=60)
GTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACG < SRR4302547.4238236/94‑1 (MQ=60)
TATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGG < SRR4302547.168898/94‑1 (MQ=60)
TATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATACAAACGG > SRR4302547.2025412/1‑94 (MQ=60)
ATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGC > SRR4302547.892814/1‑94 (MQ=60)
ATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGC < SRR4302547.937821/94‑1 (MQ=60)
ATGCGTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGC > SRR4302547.3731141/1‑94 (MQ=60)
CGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCT < SRR4302547.3329005/94‑1 (MQ=60)
GTTTTCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTA > SRR4302547.3500412/1‑94 (MQ=60)
GTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTA > SRR4302547.362396/1‑94 (MQ=60)
TCACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGAGCTAAAAA > SRR4302547.4038205/1‑94 (MQ=60)
CACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAG < SRR4302547.3825024/94‑1 (MQ=60)
CACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAG < SRR4302547.5272165/94‑1 (MQ=60)
CACTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAG < SRR4302547.2199390/94‑1 (MQ=60)
AACTGCCGCAAAAGAAAGCCGGTAACGAAGTTACAACGGACGATGCGTTACGAATCTAGAAATAATGTTGAACAATAAAAACAGCTCTAAAAAG > SRR4302547.2791872/1‑94 (MQ=30)
ACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGC > SRR4302547.6208314/1‑94 (MQ=60)
CTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCG < SRR4302547.5086844/94‑1 (MQ=60)
CTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCG < SRR4302547.4713838/94‑1 (MQ=60)
CTGCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCG < SRR4302547.5086843/94‑1 (MQ=60)
GCCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCC < SRR4302547.2194483/94‑1 (MQ=60)
CCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGACATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCG > SRR4302547.3780274/1‑94 (MQ=60)
CCGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCG < SRR4302547.866584/94‑1 (MQ=60)
CGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGT < SRR4302547.2735890/94‑1 (MQ=60)
CGAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGT > SRR4302547.6425409/1‑94 (MQ=60)
GAAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTT > SRR4302547.2552181/1‑94 (MQ=60)
AAAATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTT > SRR4302547.1528751/1‑94 (MQ=60)
AAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATCAAAACGGCGCTAAAAAGCGCCGTTTT > SRR4302547.1659449/1‑94 (MQ=60)
AATGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTT < SRR4302547.5895984/94‑1 (MQ=60)
TGAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTT < SRR4302547.4477433/94‑1 (MQ=60)
GAAAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTT > SRR4302547.4465708/1‑94 (MQ=60)
AAGCCGGTAAAGAAGTTACAACGGACGCTGAGTTACGTATCTGGTAATAAGGTTGAAAAATAAAAACGGCGCTGAAAAGCGCCGTCTTTTTcgg > SRR4302547.6070373/1‑91 (MQ=60)
AAGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGC > SRR4302547.3249503/1‑94 (MQ=60)
AAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTGAAAAGCGCCGTTTTTTTTGA < SRR4302547.5474568/94‑1 (MQ=60)
AGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGAC > SRR4302547.2704593/1‑94 (MQ=60)
AGCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGAC < SRR4302547.1555946/94‑1 (MQ=60)
AGCCGGTAAAGAAGATACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGAC > SRR4302547.4341889/1‑94 (MQ=60)
GCCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACG > SRR4302547.585092/1‑94 (MQ=60)
GCCGGTAAAAAAGTTACAACGGACGATGAGTTACGTTTCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACG < SRR4302547.2547952/94‑1 (MQ=60)
CCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGG > SRR4302547.2533422/1‑94 (MQ=60)
CCGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTCTTTTTGACTG > SRR4302547.4798223/1‑94 (MQ=60)
CGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGTTTAAAAAATAAAAACGGCGCTAAAAAGCGCCG‑TTTTTTTGACGGTG < SRR4302547.4914892/94‑1 (MQ=60)
CGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGT > SRR4302547.409222/1‑94 (MQ=60)
CGGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGT > SRR4302547.3762906/1‑94 (MQ=60)
GGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTG < SRR4302547.6660578/94‑1 (MQ=60)
|
GAACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTG > NC_000913/4636963‑4637148
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
