Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGC‑‑CAAG‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACGGTA  >  NC_000913/3222866‑3223040
                                                                                      |                                                                                            
CAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCA                                                                                   >  SRR4302547.1219141/1‑94 (MQ=60)
CAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCA                                                                                   >  SRR4302547.1562755/1‑94 (MQ=60)
   GTGGCGTATTACGGTCGTGGCCCGGGAGAAACCTACGCAAACAGCCCGCAGTCTAACATCATCGATATCTGGCGC‑‑‑‑AGCCCCGTCGAAGCCATGT                                                                                <  SRR4302547.401969/94‑1 (MQ=34)
   GTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGT                                                                                <  SRR4302547.5349784/94‑1 (MQ=60)
   GTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGT                                                                                >  SRR4302547.6723370/1‑94 (MQ=60)
   GTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGT                                                                                >  SRR4302547.2225366/1‑94 (MQ=60)
    TGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTT                                                                               >  SRR4302547.1163916/1‑94 (MQ=60)
    TGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTT                                                                               <  SRR4302547.632528/94‑1 (MQ=60)
     GGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTC                                                                              <  SRR4302547.857256/94‑1 (MQ=60)
       CGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGA                                                                            >  SRR4302547.5799272/1‑94 (MQ=60)
        GTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAG                                                                           >  SRR4302547.3921625/1‑94 (MQ=60)
          ATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAA                                                                         <  SRR4302547.1280417/94‑1 (MQ=60)
           TTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAAC                                                                        <  SRR4302547.4847190/94‑1 (MQ=60)
             ACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTA                                                                      >  SRR4302547.3561942/1‑94 (MQ=60)
              CGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTAT                                                                     >  SRR4302547.6488063/1‑94 (MQ=60)
              CGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTAT                                                                     >  SRR4302547.886228/1‑94 (MQ=60)
              CGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTAT                                                                     <  SRR4302547.5986663/94‑1 (MQ=60)
               GGTCGTGTACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGC‑‑‑‑AGCCCCGTCGATGCCATGTTCGAGAACTATC                                                                    <  SRR4302547.2238765/94‑1 (MQ=60)
               GGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATC                                                                    <  SRR4302547.480236/94‑1 (MQ=60)
               GGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATC                                                                    >  SRR4302547.2553542/1‑94 (MQ=60)
               GGTCGTCGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATC                                                                    <  SRR4302547.4811536/94‑1 (MQ=60)
                GTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCC                                                                   <  SRR4302547.4995555/94‑1 (MQ=60)
                GTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCC                                                                   <  SRR4302547.6560472/94‑1 (MQ=60)
                  CGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCT                                                                 <  SRR4302547.4347493/94‑1 (MQ=60)
                   GTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTT                                                                >  SRR4302547.3963940/1‑94 (MQ=60)
                   GTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTT                                                                >  SRR4302547.3318136/1‑94 (MQ=60)
                   GTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTT                                                                >  SRR4302547.415492/1‑94 (MQ=60)
                    TGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTC                                                               <  SRR4302547.6651472/94‑1 (MQ=60)
                    TGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTC                                                               <  SRR4302547.2689328/94‑1 (MQ=60)
                      GCCCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCC                                                             <  SRR4302547.5010448/94‑1 (MQ=60)
                      GACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCC                                                             <  SRR4302547.5088837/94‑1 (MQ=60)
                      GACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCC                                                             <  SRR4302547.1877855/94‑1 (MQ=60)
                       ACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCG                                                            <  SRR4302547.3238942/94‑1 (MQ=60)
                       ACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCG                                                            >  SRR4302547.1543196/1‑94 (MQ=60)
                       ACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCG                                                            >  SRR4302547.4001781/1‑94 (MQ=60)
                         CGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGC‑‑‑‑AGCCCCGTCGATGCCATGTTCGAGAACTTTCCCTTCCCGCA                                                          <  SRR4302547.5182080/94‑1 (MQ=60)
                          GGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAG                                                         >  SRR4302547.2880729/1‑94 (MQ=60)
                          GGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAG                                                         >  SRR4302547.6024079/1‑94 (MQ=60)
                          GGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAG                                                         <  SRR4302547.731487/94‑1 (MQ=60)
                              GAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACA                                                     >  SRR4302547.5123762/1‑94 (MQ=60)
                              GAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACA                                                     >  SRR4302547.5975620/1‑94 (MQ=60)
                              GAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACA                                                     <  SRR4302547.1506023/94‑1 (MQ=60)
                              GAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACA                                                     >  SRR4302547.4836435/1‑94 (MQ=60)
                                AAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAAC                                                   >  SRR4302547.4104736/1‑94 (MQ=60)
                                AAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAAC                                                   <  SRR4302547.2242119/94‑1 (MQ=60)
                                AAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAAC                                                   >  SRR4302547.5738099/1‑94 (MQ=60)
                                 AACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACG                                                  <  SRR4302547.5797044/94‑1 (MQ=60)
                                 AACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACG                                                  <  SRR4302547.6405131/94‑1 (MQ=60)
                                 AACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACG                                                  <  SRR4302547.2589614/94‑1 (MQ=60)
                                  ACTACGCCGACAGCCGGCAGGCTAACATCATCGATATCTGGCGC‑‑AACA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCCCAGAACAAGGG                                                 >  SRR4302547.861159/1‑94 (MQ=60)
                                  ACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGG                                                 >  SRR4302547.4758855/1‑94 (MQ=60)
                                   CTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGT                                                <  SRR4302547.2072609/94‑1 (MQ=60)
                                   CTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGT                                                >  SRR4302547.3743155/1‑94 (MQ=60)
                                   CTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGT                                                >  SRR4302547.2463314/1‑94 (MQ=60)
                                   CTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCATTCCCGCAGAACAACGGA                                                >  SRR4302547.1460949/1‑94 (MQ=60)
                                     ACGCTGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAA                                              <  SRR4302547.6512494/94‑1 (MQ=60)
                                     ACGCCGACAGCCAGCAGGCTAACATCATCGATATCTCGCGCAGCA‑‑‑‑CCGTCGATGGCATGCTCGAGAACTATCCCTTCCCGCAGAACAACGGTAA                                              >  SRR4302547.135919/1‑94 (MQ=60)
                                      CGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAAC                                             >  SRR4302547.3012249/1‑94 (MQ=60)
                                      CGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAAC                                             >  SRR4302547.5840378/1‑94 (MQ=60)
                                       GCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACC                                            >  SRR4302547.2742440/1‑94 (MQ=60)
                                       GCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACC                                            <  SRR4302547.5537513/94‑1 (MQ=60)
                                       GCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACC                                            <  SRR4302547.5098847/94‑1 (MQ=60)
                                       GCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACC                                            >  SRR4302547.3580120/1‑94 (MQ=60)
                                         CGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGT                                          >  SRR4302547.1861410/1‑94 (MQ=60)
                                          GACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTC                                         >  SRR4302547.4851249/1‑94 (MQ=60)
                                          GACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTC                                         <  SRR4302547.5443915/94‑1 (MQ=60)
                                          GACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGGAACCGTC                                         >  SRR4302547.5933573/1‑94 (MQ=60)
                                           ACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCA                                        >  SRR4302547.4379830/1‑94 (MQ=60)
                                           ACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCA                                        <  SRR4302547.1368059/94‑1 (MQ=60)
                                           ACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCA                                        <  SRR4302547.5510729/94‑1 (MQ=60)
                                             AGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGC                                      <  SRR4302547.3023039/94‑1 (MQ=60)
                                              GCCAGCAGGCTAACATCATCGGTATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCA                                     >  SRR4302547.5521214/1‑94 (MQ=60)
                                              GCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCA                                     >  SRR4302547.5005164/1‑94 (MQ=60)
                                              GCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCA                                     <  SRR4302547.5050155/94‑1 (MQ=60)
                                                CAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATG                                   >  SRR4302547.4461924/1‑94 (MQ=60)
                                                CAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATG                                   <  SRR4302547.3460456/94‑1 (MQ=60)
                                                 AGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGT                                  >  SRR4302547.5168845/1‑94 (MQ=60)
                                                  GCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTC                                 <  SRR4302547.4044169/94‑1 (MQ=60)
                                                   CAGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCAATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCC                                >  SRR4302547.674598/1‑94 (MQ=60)
                                                    AGGCTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCG                               <  SRR4302547.920212/94‑1 (MQ=60)
                                                      GCTACCATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCT                             <  SRR4302547.3549869/94‑1 (MQ=60)
                                                       CTAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTTTCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTG                            >  SRR4302547.2626977/1‑94 (MQ=60)
                                                        TAACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGG                           >  SRR4302547.2155865/1‑94 (MQ=60)
                                                         AACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGA                          <  SRR4302547.3807203/94‑1 (MQ=60)
                                                          ACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGAC                         >  SRR4302547.490586/1‑94 (MQ=60)
                                                          ACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGAC                         <  SRR4302547.406419/94‑1 (MQ=60)
                                                          ACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGAC                         >  SRR4302547.667063/1‑94 (MQ=60)
                                                          ACATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAAATATCGCTTCCAGCAGAACAACGGTAACCGTCAGCATGTTCGCTGGAC                         >  SRR4302547.6285138/1‑94 (MQ=60)
                                                           CATCATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACG                        >  SRR4302547.2449003/1‑94 (MQ=60)
                                                               ATCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCAC                    >  SRR4302547.4708659/1‑94 (MQ=60)
                                                                TCGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACT                   <  SRR4302547.2815323/94‑1 (MQ=60)
                                                                 CGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTG                  <  SRR4302547.5386737/94‑1 (MQ=60)
                                                                 CGATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTG                  <  SRR4302547.2289567/94‑1 (MQ=60)
                                                                  GATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGA                 <  SRR4302547.1003361/94‑1 (MQ=60)
                                                                  GATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCATTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGA                 >  SRR4302547.3856274/1‑94 (MQ=60)
                                                                   ATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGAC                <  SRR4302547.3243979/94‑1 (MQ=60)
                                                                   ATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGAC                >  SRR4302547.2583201/1‑94 (MQ=60)
                                                                   ATATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGAC                >  SRR4302547.6265199/1‑94 (MQ=60)
                                                                    TATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACT               <  SRR4302547.833932/94‑1 (MQ=60)
                                                                    TATCTGGCGCAGCA‑‑‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACT               <  SRR4302547.1930415/94‑1 (MQ=60)
                                                                          tctggcgcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACAGACTAA             <  SRR4302547.1140845/82‑1 (MQ=60)
                                                                             ggcgcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCG          >  SRR4302547.6341262/10‑94 (MQ=60)
                                                                             ggcgcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCG          <  SRR4302547.797544/85‑1 (MQ=60)
                                                                               cgcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCC        >  SRR4302547.1501093/8‑94 (MQ=60)
                                                                               cgcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCC        <  SRR4302547.1550034/87‑1 (MQ=60)
                                                                               cgcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCC        <  SRR4302547.3113319/87‑1 (MQ=60)
                                                                                gcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCGCTGACTAACCGCCA       <  SRR4302547.3610779/88‑1 (MQ=60)
                                                                                gcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCA       <  SRR4302547.955959/88‑1 (MQ=60)
                                                                                gcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCA       >  SRR4302547.5438636/7‑94 (MQ=60)
                                                                                gcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCA       >  SRR4302547.5815146/7‑94 (MQ=60)
                                                                                 cagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCAC      <  SRR4302547.342429/89‑1 (MQ=60)
                                                                                 cagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCAC      >  SRR4302547.4468170/6‑94 (MQ=60)
                                                                                  agcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACG     >  SRR4302547.6713281/5‑94 (MQ=60)
                                                                                  agcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACG     >  SRR4302547.3538584/5‑94 (MQ=60)
                                                                                  agcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACG     <  SRR4302547.413594/90‑1 (MQ=60)
                                                                                  agcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACG     >  SRR4302547.3097049/5‑94 (MQ=60)
                                                                                   A‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACGGTA  >  SRR4302547.5993271/1‑94 (MQ=60)
                                                                                   A‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACCGTA  >  SRR4302547.1260009/1‑94 (MQ=60)
                                                                                    caCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACGGT   >  SRR4302547.3796648/3‑94 (MQ=60)
                                                                                    caCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACGGT   >  SRR4302547.1713878/3‑94 (MQ=60)
                                                                                      |                                                                                            
CAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGC‑‑CAAG‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACGGTA  >  NC_000913/3222866‑3223040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑