Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F3 I100 R1 2 0.0 13730 17.2% 2361 79.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCGCCCAGCGGAACCCGACCGGGTGAGCTTCAGCGGCGTTACCGCCCATCACCACGACGAGGTTGGCGTTCTTGATGTCGACCCAGTGGTTGGTCATCGC  >  NZ_CP009273/4078450‑4078549
                         |                                                                          
TCGCCCAGCGGAACCCGACAGGGTGCGCTTCAGCGGCGTTACCGCCCATCACCctgtctcttatacacatctgacgctgccgacgatctactctgtgtag  >  SRR3722240.1260/1‑53 (MQ=60)
TCGCCCAGCGGAACCCGACAGGGTGCGCTTCAGCGGCGTTACCGCCCATCACCctgtctcttatacacatctgacgctgccgacgatctactctgtgtag  >  SRR3722240.3950/1‑53 (MQ=60)
                         |                                                                          
TCGCCCAGCGGAACCCGACCGGGTGAGCTTCAGCGGCGTTACCGCCCATCACCACGACGAGGTTGGCGTTCTTGATGTCGACCCAGTGGTTGGTCATCGC  >  NZ_CP009273/4078450‑4078549

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑