Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F3 I160 R1	220	104.1	6051714	95.9%	5803593	84.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP009273	3,771,044	A→G	K96E (AAA→GAA)	lldP →	L‑lactate permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	3,771,044	0	A	G	100.0%	514.6 / NA	135	K96E (AAA→GAA)	lldP	L‑lactate permease
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (69/66); total (69/66)

Only 100 of 135 total aligned reads displayed.

GGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTG  >  NZ_CP009273/3770962‑3771129

ggtggtTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCgg                                                                                <  2:1599452/90‑1 (MQ=255)

  tggtTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGc                                                                              <  2:630478/90‑1 (MQ=255)

  tggtTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGc                                                                              <  1:1192316/90‑1 (MQ=255)

  tggtTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGc                                                                              <  2:1207373/90‑1 (MQ=255)

  tggtTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGc                                                                              <  1:251433/90‑1 (MQ=255)

  tggtTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGc                                                                              <  2:2185488/90‑1 (MQ=255)

  tggtTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGc                                                                              <  1:1953849/90‑1 (MQ=255)

  tggtTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGc                                                                              <  2:2423339/90‑1 (MQ=255)

         tGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGa                                                                       >  1:1573042/1‑90 (MQ=255)

         tGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGa                                                                       >  2:2250219/1‑90 (MQ=255)

           gTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGAca                                                                     >  2:513689/1‑90 (MQ=255)

             ttcttcTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGAcatc                                                                   >  1:678871/1‑90 (MQ=255)

             ttcttcTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGAcatc                                                                   >  2:1762264/1‑90 (MQ=255)

             ttcttcTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGAcatc                                                                   >  1:1832570/1‑90 (MQ=255)

              tcttctACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGAcatca                                                                  >  1:2383473/1‑90 (MQ=255)

                 tctACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTc                                                               <  1:877500/90‑1 (MQ=255)

                   tACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGc                                                             <  2:2626534/90‑1 (MQ=255)

                   tACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGc                                                             <  2:443032/90‑1 (MQ=255)

                   tACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGc                                                             <  1:2250219/90‑1 (MQ=255)

                   tACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGc                                                             <  1:91661/90‑1 (MQ=255)

                   tACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGc                                                             <  1:88786/90‑1 (MQ=255)

                         ttGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCt                                                       >  2:201599/1‑90 (MQ=255)

                           gtgGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGc                                                             <  2:2893449/82‑1 (MQ=255)

                           gtgGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTAt                                                     >  2:1111663/1‑90 (MQ=255)

                             ggtccATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTc                                                   >  2:1300521/4‑90 (MQ=255)

                              gCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCt                                                  <  2:489009/90‑1 (MQ=255)

                                ccATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCttt                                                >  1:2611757/1‑90 (MQ=255)

                                 cATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGc                                                                              <  1:2819194/59‑1 (MQ=255)

                                 cATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGc                                                                              >  2:2819194/1‑59 (MQ=255)

                                 cATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGAc                                                                      >  2:76419/1‑67 (MQ=255)

                                 cATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTAtt                                                    >  1:1419847/1‑85 (MQ=255)

                                 cATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTAtt                                                    <  2:1419847/85‑1 (MQ=255)

                                 cATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTc                                               >  2:185729/1‑90 (MQ=255)

                                 cATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTc                                               >  1:755151/1‑90 (MQ=255)

                                  aTCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCg                                              >  2:2433250/1‑90 (MQ=255)

                                   tCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGa                                             >  1:2394107/1‑90 (MQ=255)

                                   tCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGa                                             >  2:2783993/1‑90 (MQ=255)

                                     gcgTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  1:1105777/90‑1 (MQ=255)

                                     gcgTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  2:156139/90‑1 (MQ=255)

                                     gcgTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  2:305436/90‑1 (MQ=255)

                                     gcgTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  2:1832570/90‑1 (MQ=255)

                                     gcgTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  2:3003832/90‑1 (MQ=255)

                                     gcgTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  2:2383257/90‑1 (MQ=255)

                                     gcgTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  2:2394107/90‑1 (MQ=255)

                                     gcgTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  1:1403496/90‑1 (MQ=255)

                                     gcgTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  1:1609228/90‑1 (MQ=255)

                                     gcgTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  1:185729/90‑1 (MQ=255)

                                     gcgTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  1:2404872/90‑1 (MQ=255)

                                     gcgTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  1:2968420/90‑1 (MQ=255)

                                     gcgTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  1:321147/90‑1 (MQ=255)

                                     gcgTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  1:409448/90‑1 (MQ=255)

                                       gTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGc                                                                              <  2:796179/53‑1 (MQ=255)

                                       gTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGc                                                                              >  1:796179/1‑53 (MQ=255)

                                       gTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGc                                                             >  2:1264528/1‑70 (MQ=255)

                                       gTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGc                                                             <  1:1264528/70‑1 (MQ=255)

                                       gTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAAc                                         <  2:2611757/90‑1 (MQ=255)

                                       gTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAAc                                         <  1:996630/90‑1 (MQ=255)

                                       gTGAATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAAc                                         >  2:1089337/1‑90 (MQ=255)

                                          gATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAAcccc                                      <  1:201599/90‑1 (MQ=255)

                                              attattGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGc                                                                              <  2:2805431/46‑1 (MQ=255)

                                              attattGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGc                                                                              >  1:2805431/1‑46 (MQ=255)

                                              attattGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGAc                                  <  1:108346/90‑1 (MQ=255)

                                              attattGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGAc                                  <  2:2383473/90‑1 (MQ=255)

                                               ttattGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGAcc                                 <  2:703301/90‑1 (MQ=255)

                                               ttattGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGAcc                                 <  1:4296/90‑1 (MQ=255)

                                                    gCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCgc                            >  1:653496/1‑89 (MQ=255)

                                                    gCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGt                            >  2:1549773/1‑90 (MQ=255)

                                                    gCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGt                            >  2:2944134/1‑90 (MQ=255)

                                                    gCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGAAATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGt                            >  1:690772/1‑90 (MQ=255)

                                                      aGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCt                          >  1:951533/1‑90 (MQ=255)

                                                       gCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           >  1:1197823/1‑72 (MQ=255)

                                                       gCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTg                         >  2:1589304/1‑90 (MQ=255)

                                                        cGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGc                        <  1:1644879/90‑1 (MQ=255)

                                                         ggTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGc                                                             >  1:419626/1‑52 (MQ=255)

                                                         ggTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGc                                                             <  2:419626/52‑1 (MQ=255)

                                                         ggTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           >  1:1647757/1‑70 (MQ=255)

                                                         ggTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  2:1647757/70‑1 (MQ=255)

                                                         ggTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCa                       >  1:2456510/1‑90 (MQ=255)

                                                            gtTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAAt                    >  2:2004673/1‑90 (MQ=255)

                                                            gtTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAAt                    >  1:1121321/1‑90 (MQ=255)

                                                                    ataAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           >  2:1371946/1‑59 (MQ=255)

                                                                    ataAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           <  1:1371946/59‑1 (MQ=255)

                                                                    ataAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGAtcg            >  2:610514/1‑90 (MQ=255)

                                                                    ataAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGAtcg            >  2:2562251/1‑90 (MQ=255)

                                                                    ataAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGAtcg            >  1:2262462/1‑90 (MQ=255)

                                                                    ataAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGAtcg            >  1:613427/1‑90 (MQ=255)

                                                                      aaGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGt                            <  1:275757/72‑1 (MQ=255)

                                                                      aaGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGt                            >  2:275757/1‑72 (MQ=255)

                                                                      aaGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGAtcgtc          >  1:1574157/1‑90 (MQ=255)

                                                                       aGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGAtcgtcg         <  2:2196191/90‑1 (MQ=255)

                                                                          tctcGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATa                                           >  1:1479469/1‑53 (MQ=255)

                                                                          tctcGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGtt      >  2:1887832/1‑90 (MQ=255)

                                                                          tctcGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGtt      >  1:2206637/1‑90 (MQ=255)

                                                                          tctcGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAA‑‑CCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTc    >  2:1190141/1‑90 (MQ=255)

                                                                           ctcGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGttt     >  1:2937710/1‑90 (MQ=255)

                                                                            tcGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCttt                                                >  1:1768566/1‑46 (MQ=255)

                                                                            tcGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCttt                                                <  2:1768566/46‑1 (MQ=255)

                                                                             cGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCt   >  2:1762287/1‑90 (MQ=255)

                                                                              ggTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTg  >  2:2024381/1‑90 (MQ=255)

                                                                              ggTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTg  >  2:1399689/1‑90 (MQ=255)

GGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTG  >  NZ_CP009273/3770962‑3771129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCG  >  NZ_CP009273/3770946‑3771139

CTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGA                                                                                                >  SRR3722030.1889134/1‑100 (MQ=60)

CTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGA                                                                                                >  SRR3722030.2715078/1‑100 (MQ=60)

CTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGA                                                                                                >  SRR3722030.714169/1‑100 (MQ=60)

CTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGA                                                                                                >  SRR3722030.177793/1‑100 (MQ=60)

CTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGA                                                                                                >  SRR3722030.337548/1‑100 (MQ=60)

   ACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAAC                                                                                             <  SRR3722030.764150/100‑1 (MQ=60)

        agGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGC                                                                                        <  SRR3722030.2025705/98‑1 (MQ=60)

          GGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAG                                                                                      <  SRR3722030.1559498/100‑1 (MQ=60)

               CGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGA                                                                                 >  SRR3722030.1598506/1‑100 (MQ=60)

                  tcagatgtgtataagagacaGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACAT                                                                              <  SRR3722030.2871234/80‑1 (MQ=60)

                  TGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACAT                                                                              <  SRR3722030.1987946/100‑1 (MQ=60)

                  TGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACAT                                                                              <  SRR3722030.255064/100‑1 (MQ=60)

                  TGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACAT                                                                              <  SRR3722030.1209969/100‑1 (MQ=60)

                   GGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATC                                                                             <  SRR3722030.331154/100‑1 (MQ=60)

                   GGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATC                                                                             >  SRR3722030.689380/1‑100 (MQ=60)

                   GGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATC                                                                             >  SRR3722030.1863701/1‑100 (MQ=60)

                   GGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATC                                                                             >  SRR3722030.439572/1‑100 (MQ=60)

                   GGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATC                                                                             >  SRR3722030.1499074/1‑100 (MQ=60)

                   GGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTAACATC                                                                             >  SRR3722030.917308/1‑100 (MQ=60)

                    GTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCA                                                                            >  SRR3722030.2426827/1‑100 (MQ=60)

                          gtataagagacaGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCT                                                                      <  SRR3722030.77596/88‑1 (MQ=60)

                                 TCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTAT                                                               <  SRR3722030.890962/100‑1 (MQ=60)

                                 TCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTAT                                                               >  SRR3722030.2946825/1‑100 (MQ=60)

                                   taagagacagGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTC                                                             <  SRR3722030.1283434/90‑1 (MQ=60)

                                   TACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTC                                                             <  SRR3722030.2290844/100‑1 (MQ=60)

                                   TACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTC                                                             <  SRR3722030.90114/100‑1 (MQ=60)

                                   TACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTC                                                             <  SRR3722030.1181454/100‑1 (MQ=60)

                                   TACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTC                                                             <  SRR3722030.93024/100‑1 (MQ=60)

                                   TACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTC                                                             <  SRR3722030.189971/100‑1 (MQ=60)

                                      GGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGGTCGTCTATTCTTT                                                          >  SRR3722030.2659742/1‑100 (MQ=60)

                                       GGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTC                                                         >  SRR3722030.766780/1‑100 (MQ=60)

                                       GGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTC                                                         >  SRR3722030.1442288/1‑100 (MQ=60)

                                         TTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGA                                                       >  SRR3722030.2437677/1‑100 (MQ=60)

                                             GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCtgtctcttatacacatctgacgctgc                                                   >  SRR3722030.808427/1‑74 (MQ=60)

                                              GCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACC                                                  <  SRR3722030.2751482/100‑1 (MQ=60)

                                                CCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCC                                                <  SRR3722030.1603247/100‑1 (MQ=60)

                                                    CGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCtgtctcttatacacatctgacgctgccgacgac                                            >  SRR3722030.2857214/1‑67 (MQ=60)

                                                     tcagatgtgtataagagacaGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACC                                           <  SRR3722030.1393391/80‑1 (MQ=60)

                                                     GCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACC                                           <  SRR3722030.188400/100‑1 (MQ=60)

                                                     GCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACC                                           <  SRR3722030.325835/100‑1 (MQ=60)

                                                     GCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACC                                           <  SRR3722030.415621/100‑1 (MQ=60)

                                                     GCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACC                                           <  SRR3722030.3023120/100‑1 (MQ=60)

                                                     GCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACC                                           <  SRR3722030.2448689/100‑1 (MQ=60)

                                                     GCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACC                                           >  SRR3722030.684512/1‑100 (MQ=60)

                                                     GCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACC                                           <  SRR3722030.1748792/100‑1 (MQ=60)

                                                     GCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACC                                           <  SRR3722030.1635323/100‑1 (MQ=60)

                                                     GCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACC                                           <  SRR3722030.1425606/100‑1 (MQ=60)

                                                     GCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACC                                           <  SRR3722030.1350029/100‑1 (MQ=60)

                                                     GCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACC                                           <  SRR3722030.1122281/100‑1 (MQ=60)

                                                       GTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAG                                         <  SRR3722030.1011727/100‑1 (MQ=60)

                                                          GATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGT                                      <  SRR3722030.204479/100‑1 (MQ=60)

                                                          GATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGC                                      >  SRR3722030.663618/1‑100 (MQ=60)

                                                          GATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGAAATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGT                                      >  SRR3722030.701465/1‑100 (MQ=60)

                                                            TCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCT                                    >  SRR3722030.966053/1‑100 (MQ=60)

                                                             CATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCctgtctct                                   >  SRR3722030.1215547/1‑92 (MQ=60)

                                                              ATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGC                                  <  SRR3722030.109942/100‑1 (MQ=60)

                                                               TTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCctgtctcttatacacatctgacgctgcc                                 >  SRR3722030.425960/1‑72 (MQ=60)

                                                               TTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCctgtctctta                                 >  SRR3722030.1674503/1‑90 (MQ=60)

                                                               TTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCA                                 >  SRR3722030.2501401/1‑100 (MQ=60)

                                                               TTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCA                                 <  SRR3722030.4362/100‑1 (MQ=60)

                                                                  TTGCAGCGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAAT                              >  SRR3722030.1138044/1‑100 (MQ=60)

                                                                    agagacagGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGC                            <  SRR3722030.279759/92‑1 (MQ=60)

                                                                        CGGTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGAT                        <  SRR3722030.1671570/100‑1 (MQ=60)

                                                                          GTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCG                      >  SRR3722030.2303365/1‑100 (MQ=60)

                                                                          GTGTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCG                      >  SRR3722030.622932/1‑100 (MQ=60)

                                                                            GTTCGTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTC                    >  SRR3722030.1599638/1‑100 (MQ=60)

                                                                                GTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCctgtctcttatacacatctgacgctgc                >  SRR3722030.1503123/1‑73 (MQ=60)

                                                                                GTCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTT                >  SRR3722030.2246328/1‑100 (MQ=60)

                                                                                 TCTATAAGATCTCGGTGGAAGCCGGATCGTTTGAAATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTT               >  SRR3722030.2314679/1‑100 (MQ=60)

                                                                                 TCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTT               >  SRR3722030.2460341/1‑100 (MQ=60)

                                                                                 TCTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTT               >  SRR3722030.2991857/1‑100 (MQ=60)

                                                                                  CTATAAGATCTCGGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCctgtctcttatacacatctgacgctgccggacga              >  SRR3722030.1798036/1‑66 (MQ=60)

                                                                                       AGATCTTGGTGGAAACCCGGCAGTTTGACATCTTTCCCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTATGCAAATGCTGATCGTCGCTTTCTGTTT         <  SRR3722030.2102998/100‑1 (MQ=60)

                                                                                              GGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCT  >  SRR3722030.1551845/1‑100 (MQ=60)

                                                                                              GGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCG  >  SRR3722030.1475437/1‑100 (MQ=60)

                                                                                              GGTGGAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCG  >  SRR3722030.2741411/1‑100 (MQ=60)

CTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGTGGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCG  >  NZ_CP009273/3770946‑3771139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`