Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F3 I160 R1 220 104.1 6051714 95.9% 5803593 84.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 4,543,103 A→G E129G (GAA→GGA)  uxuB → fructuronate reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092734,543,1030AG100.0% 348.4 / NA 93E129G (GAA→GGA) uxuBfructuronate reductase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (43/50);  total (43/50)

Only 100 of 103 total aligned reads displayed.

CGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGC  >  NZ_CP009273/4543016‑4543187
                                                                                       |                                                                                    
cgcTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGgaa                                                                                    <  1:1425725/90‑1 (MQ=255)
cgcTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGgaa                                                                                    <  1:225041/90‑1 (MQ=255)
cgcTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGaaa                                                                                    <  1:195103/90‑1 (MQ=255)
cgcTGCATCCGGAAATCGATCGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGgaa                                                                                    <  2:1849925/90‑1 (MQ=255)
    gCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAgg                                                                                >  2:1228609/1‑90 (MQ=255)
    gCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAgg                                                                                >  2:2271142/1‑90 (MQ=255)
    gCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAgg                                                                                >  1:291123/1‑90 (MQ=255)
    gCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAgg                                                                                >  1:2623966/1‑90 (MQ=255)
      aTCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCt                                                                              <  1:312833/90‑1 (MQ=255)
      aTCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCt                                                                              >  1:2383450/1‑90 (MQ=255)
        ccGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTAc                                                                            <  1:1165326/90‑1 (MQ=255)
        ccGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTAc                                                                            <  2:365761/90‑1 (MQ=255)
         cGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACt                                                                           <  2:397052/90‑1 (MQ=255)
              aTCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCt                                                                      >  2:1186816/1‑90 (MQ=255)
              aTCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCt                                                                      >  2:2930610/1‑90 (MQ=255)
               tCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTg                                                                     <  1:2792311/90‑1 (MQ=255)
                 gATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGgaa                                                                                    <  1:2199089/73‑1 (MQ=255)
                 gATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGAt                                                                   >  2:2612969/1‑90 (MQ=255)
                     gCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGgaa                                                                                    <  2:1419489/69‑1 (MQ=255)
                     gCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGgaa                                                                                    >  1:1419489/1‑69 (MQ=255)
                       tGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCGCGGGAAAAGGCTACTGCGCTGATGCGGCa                                                             <  2:2548566/90‑1 (MQ=255)
                       tGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCa                                                             <  1:1408294/90‑1 (MQ=255)
                          gAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGc                                                          <  2:2388966/90‑1 (MQ=255)
                          gAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGc                                                          <  1:1301452/90‑1 (MQ=255)
                            aGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCgg                                                        <  2:2712541/90‑1 (MQ=255)
                            aGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCgg                                                        <  1:2925700/90‑1 (MQ=255)
                            aGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCgg                                                        <  2:1487618/90‑1 (MQ=255)
                            aGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCgg                                                        <  1:1959661/90‑1 (MQ=255)
                             ggTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGt                                                       <  2:1754407/90‑1 (MQ=255)
                               tATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCa                                                     >  2:572609/1‑90 (MQ=255)
                               tATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCa                                                     <  1:2255825/90‑1 (MQ=255)
                                aTTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCaa                                                    >  1:2732249/1‑90 (MQ=255)
                                 ttCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAAc                                                   <  2:2625933/90‑1 (MQ=255)
                                  tctcAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACt                                                  <  2:2049852/90‑1 (MQ=255)
                                  tctcAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACt                                                  <  2:850894/90‑1 (MQ=255)
                                  tctcAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACt                                                  <  1:2251953/90‑1 (MQ=255)
                                  tctcAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACt                                                  <  1:2521220/90‑1 (MQ=255)
                                  tctcAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACt                                                  <  2:330236/90‑1 (MQ=255)
                                  tctcAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACt                                                  <  2:2876961/90‑1 (MQ=255)
                                    tcAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTgg                                                <  1:1365213/90‑1 (MQ=255)
                                     cAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGa                                               >  2:1331575/1‑90 (MQ=255)
                                     cAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGa                                               >  2:2172637/1‑90 (MQ=255)
                                       aCGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGgaa                                                                                    <  2:814806/51‑1 (MQ=255)
                                       aCGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGgaa                                                                                    >  1:814806/1‑51 (MQ=255)
                                       aCGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTg                                                                     <  2:2068382/66‑1 (MQ=255)
                                       aCGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTg                                                                     >  1:2068382/1‑66 (MQ=255)
                                       aCGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGAtc                                             <  1:485122/90‑1 (MQ=255)
                                       aCGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGAtc                                             >  1:1048421/1‑90 (MQ=255)
                                       aCGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGAtc                                             >  1:2303158/1‑90 (MQ=255)
                                       aCGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGAtc                                             >  2:1304540/1‑90 (MQ=255)
                                       aCGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGAtc                                             >  2:2548139/1‑90 (MQ=255)
                                       aCGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGAtc                                             <  1:279435/90‑1 (MQ=255)
                                       aCGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGGCACGGGAAAAGGCTACTGGGCTGATGCGGCAAGGGGTCAACTGGAtc                                             >  1:2499914/1‑90 (MQ=255)
                                        cgcgATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGAtct                                            >  1:2547563/1‑90 (MQ=255)
                                           gATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCaa                                         >  1:369043/1‑90 (MQ=255)
                                            aTGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAAt                                        >  2:2715515/1‑90 (MQ=255)
                                            aTGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAAt                                        >  2:898587/1‑90 (MQ=255)
                                            aTGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAAt                                        >  2:1365241/1‑90 (MQ=255)
                                            aTGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAAt                                        >  1:1379003/1‑90 (MQ=255)
                                             tGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATa                                       >  1:3023746/1‑90 (MQ=255)
                                               gcgcGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGAtc                                             >  1:2414983/1‑82 (MQ=255)
                                               gcgcGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGAtc                                             <  2:2414983/82‑1 (MQ=255)
                                               gcgcGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAAc                                     >  1:987931/1‑90 (MQ=255)
                                                 gcgTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAAccc                                   >  2:602361/1‑90 (MQ=255)
                                                 gcgTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAAccc                                   >  1:322249/1‑90 (MQ=255)
                                                   gcccGGAACCGGCGATTGTCTCTCTACCGGTCCCGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGc                                 <  1:2670594/88‑1 (MQ=255)
                                                   gTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGc                                 <  1:2715515/90‑1 (MQ=255)
                                                   gTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGc                                 <  1:2945388/90‑1 (MQ=255)
                                                   gTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGc                                 <  2:2880764/90‑1 (MQ=255)
                                                   gTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGc                                 <  2:2191661/90‑1 (MQ=255)
                                                   gTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGc                                 <  1:2212649/90‑1 (MQ=255)
                                                   gTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGGCAACTGGATCTCAATAACCCGc                                 >  1:2251682/1‑90 (MQ=255)
                                                    tCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCt                                <  2:3023746/90‑1 (MQ=255)
                                                        cAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATc                            <  1:954679/90‑1 (MQ=255)
                                                             ggCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCa                       <  1:1931872/90‑1 (MQ=255)
                                                             ggCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCa                       >  1:1287373/1‑90 (MQ=255)
                                                             ggCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCa                       <  1:310689/90‑1 (MQ=255)
                                                              gCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACt                                                  >  1:2775853/1‑62 (MQ=255)
                                                              gCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACt                                                  <  2:2775853/62‑1 (MQ=255)
                                                              gCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGc                                 >  1:2478079/1‑79 (MQ=255)
                                                              gCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGc                                 <  2:2478079/79‑1 (MQ=255)
                                                              gCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCAc                      <  2:2859354/90‑1 (MQ=255)
                                                                gATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGa                    <  2:1123506/90‑1 (MQ=255)
                                                                     tctctcTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTgg               <  2:2979634/90‑1 (MQ=255)
                                                                          ctAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAAc          <  2:322249/90‑1 (MQ=255)
                                                                               ggTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGAc     <  2:2383450/90‑1 (MQ=255)
                                                                               ggTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGAc     <  2:2732249/90‑1 (MQ=255)
                                                                               ggTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGAc     <  2:802640/90‑1 (MQ=255)
                                                                                  cACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACt                                                  <  1:504604/42‑1 (MQ=255)
                                                                                  cACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACt                                                  >  2:504604/1‑42 (MQ=255)
                                                                                  cACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCg                                  >  1:2260729/1‑58 (MQ=255)
                                                                                  cACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCg                                  <  2:2260729/58‑1 (MQ=255)
                                                                                  cACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCt                                >  1:706686/1‑60 (MQ=255)
                                                                                  cACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCt                                <  2:706686/60‑1 (MQ=255)
                                                                                  cACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTgc  >  1:2203644/1‑90 (MQ=255)
                                                                                  cACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTgc  >  2:36870/1‑90 (MQ=255)
                                                                                  cACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTgc  >  2:1796619/1‑90 (MQ=255)
                                                                                  cACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTgc  >  1:2209793/1‑90 (MQ=255)
                                                                                  cACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTgc  >  1:1383560/1‑90 (MQ=255)
                                                                                  cACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTgc  >  2:1660275/1‑90 (MQ=255)
                                                                                       |                                                                                    
CGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGC  >  NZ_CP009273/4543016‑4543187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGAT  >  NZ_CP009273/4543005‑4543202
                                                                                                  |                                                                                                   
GATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGA                                                                                                    <  SRR3722030.1192813/100‑1 (MQ=60)
GATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGA                                                                                                    <  SRR3722030.665186/100‑1 (MQ=60)
     AAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGG                                                                                               >  SRR3722030.295355/1‑100 (MQ=60)
     AAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGG                                                                                               >  SRR3722030.2672234/1‑100 (MQ=60)
       GAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCT                                                                                             >  SRR3722030.2426804/1‑100 (MQ=60)
          GCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCT‑CTG                                                                                         >  SRR3722030.1536530/1‑100 (MQ=60)
           gagacagTCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTG                                                                                         <  SRR3722030.2238623/93‑1 (MQ=60)
           CGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTG                                                                                         <  SRR3722030.1448287/100‑1 (MQ=60)
           CGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTG                                                                                         <  SRR3722030.228255/100‑1 (MQ=60)
           CGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGAAAAAGGCTACTG                                                                                         <  SRR3722030.197894/100‑1 (MQ=60)
                 ATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGA                                                                                   <  SRR3722030.317388/100‑1 (MQ=60)
                   CCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATG                                                                                 <  SRR3722030.1182633/100‑1 (MQ=60)
                      GAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCtgtctcttat                                                                              >  SRR3722030.1441919/1‑90 (MQ=60)
                          TCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAG                                                                          <  SRR3722030.2843869/100‑1 (MQ=60)
                                 CTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAA                                                                   >  SRR3722030.2782703/1‑100 (MQ=60)
                                  TGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAAC                                                                  <  SRR3722030.1430512/100‑1 (MQ=60)
                                     GAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGG                                                               <  SRR3722030.1321217/100‑1 (MQ=60)
                                       AGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGAT                                                             <  SRR3722030.2979635/100‑1 (MQ=60)
                                       AGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGAT                                                             <  SRR3722030.1993908/100‑1 (MQ=60)
                                        GGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCtgtctcttatacacatctgacgctgccg                                                            >  SRR3722030.827327/1‑72 (MQ=60)
                                        GGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCtgtctcttataca                                                            >  SRR3722030.2105090/1‑87 (MQ=60)
                                        GGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATC                                                            >  SRR3722030.1064183/1‑100 (MQ=60)
                                        GGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATC                                                            >  SRR3722030.2344893/1‑100 (MQ=60)
                                        GGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGGCACGGGAAAAGGCTACTGGGCTGATGCGGCAAGGGGTCAACTGGATC                                                            >  SRR3722030.2545662/1‑100 (MQ=60)
                                         GTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCT                                                           >  SRR3722030.2594234/1‑100 (MQ=60)
                                          TATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTC                                                          <  SRR3722030.2296586/100‑1 (MQ=60)
                                            TTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAA                                                        >  SRR3722030.374545/1‑100 (MQ=60)
                                             ccatgtcgtcggcagcgtcagatgtgtataagagacagCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAAT                                                       <  SRR3722030.512327/62‑1 (MQ=60)
                                             TCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAAT                                                       <  SRR3722030.2567380/100‑1 (MQ=60)
                                             TCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAAT                                                       >  SRR3722030.1400589/1‑100 (MQ=60)
                                             TCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAAT                                                       <  SRR3722030.2292607/100‑1 (MQ=60)
                                              CTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATA                                                      >  SRR3722030.3079433/1‑100 (MQ=60)
                                               TCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAA                                                     <  SRR3722030.1386521/100‑1 (MQ=60)
                                                CAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACctgtctcttatacacatctgacgctgccgacgacatggc                                                    >  SRR3722030.2801814/1‑61 (MQ=60)
                                                CAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAAC                                                    >  SRR3722030.2459000/1‑100 (MQ=60)
                                                CAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAAC                                                    >  SRR3722030.1002933/1‑100 (MQ=60)
                                                  ACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCC                                                  >  SRR3722030.326951/1‑100 (MQ=60)
                                                  ACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCC                                                  <  SRR3722030.492541/100‑1 (MQ=60)
                                                  ACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCC                                                  <  SRR3722030.283491/100‑1 (MQ=60)
                                                    GCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGGCAACTGGATCTCAATAACCCGC                                                >  SRR3722030.2292331/1‑100 (MQ=60)
                                                              gcccggaacCGGCGATTGTCTCTCTACCGGTCCCGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCA                                      <  SRR3722030.2719826/91‑1 (MQ=60)
                                                              GTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCA                                      <  SRR3722030.2252467/100‑1 (MQ=60)
                                                              GTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCA                                      <  SRR3722030.2999703/100‑1 (MQ=60)
                                                              GTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCA                                      <  SRR3722030.2765683/100‑1 (MQ=60)
                                                              GTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCA                                      >  SRR3722030.1306825/1‑100 (MQ=60)
                                                               TCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATctgtctcttatacacatc                                     >  SRR3722030.2827130/1‑82 (MQ=60)
                                                               TCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCAC                                     >  SRR3722030.2523366/1‑100 (MQ=60)
                                                                   CAAACGGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATC                                 <  SRR3722030.969234/100‑1 (MQ=60)
                                                                        GGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAA                            <  SRR3722030.1965481/100‑1 (MQ=60)
                                                                        GGCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAA                            <  SRR3722030.315212/100‑1 (MQ=60)
                                                                         GCGATTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAA                           >  SRR3722030.279815/1‑100 (MQ=60)
                                                                             TTGTCTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGctgtctcttatacacatctgacgctgccgacgacatggccagtgtaga                       >  SRR3722030.1500862/1‑52 (MQ=60)
                                                                                 CTCTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACctgtctcttatacacatctgacgctgccgacgacatggccagtgtag                   >  SRR3722030.1518638/1‑53 (MQ=60)
                                                                                   CTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCctgtctcttatacacatctgac                 >  SRR3722030.2301594/1‑78 (MQ=60)
                                                                                   CTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACctgtctcttatacacatctg                 >  SRR3722030.717606/1‑80 (MQ=60)
                                                                                   CTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGC                 >  SRR3722030.2243287/1‑100 (MQ=60)
                                                                                   CTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGC                 >  SRR3722030.2249561/1‑100 (MQ=60)
                                                                                   CTCTAACGGTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGC                 >  SRR3722030.1405244/1‑100 (MQ=60)
                                                                                           GTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGT         >  SRR3722030.21675/1‑100 (MQ=60)
                                                                                           GTCACGGGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGT         >  SRR3722030.2292141/1‑100 (MQ=60)
                                                                                                 GGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGA   >  SRR3722030.2083080/1‑100 (MQ=60)
                                                                                                 GGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGA   >  SRR3722030.189708/1‑100 (MQ=60)
                                                                                                 GGAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGA   >  SRR3722030.642656/1‑100 (MQ=60)
                                                                                                 GGAAAAGGCTACCGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGA   >  SRR3722030.837394/1‑100 (MQ=60)
                                                                                                  GAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGAT  <  SRR3722030.1949283/100‑1 (MQ=60)
                                                                                                  |                                                                                                   
GATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGAT  >  NZ_CP009273/4543005‑4543202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑